Spg004976 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg004976
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionProtein MNN4-like
Locationscaffold9: 20826971 .. 20828193 (+)
RNA-Seq ExpressionSpg004976
SyntenySpg004976
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGTGTTTGTTGGAGAGATCGTTGACGAACTGTTCGTTGAGGATCATAGTGCTGAGACGTTCTTGGGCTTCAACAAGTAAGTTATTCTAATCTAAAATAGTTTTAGATATGAATAAACACATGTTTAATCTAATTTTTGTTGTTTAGAAATAGTTTTTGAATTTTGCCCAATGTATTGGTTATCTATGGACAAAATTATTCACAACGATTTAATTCGCTTCTGCTAAAGGATTCAATTCCTTCAAGAGGAAGCATGGAACTCCCTGTTGGGAGAGCTTGGCGTAGAAGGCGAAGCCTTGCGCCAGAAAGAAGCTGAAGCAAAGACTGCGGCAGATGAAGCTGCCAACAAAGCCGCAGAAGAAGTAGCTGCGAAAGAAAAAGAATGCGCTGAGGAGGAAGCACATATTAAGGCCGCGGAGGAGTTAGCCGCAGCAAGTCTAGCTGAAATCGCAGCGGCCCTAAATTCTCCGCCACGTGAGTCAACGTCGCCTGAGTCCGAAGATAACCTTCCGCTGACTCATCGCCGCAATTTGCAAGCAGCTGCGCTGGCTATTAGCGAGCCTTCAGAGAGCCATGCACTAGGCCCCCCCAAAAGAAAAAGGGCATCCACCGCATCCAAGGGCAAGGTGAAGGCTGGCGAGGAAAAAGTCAATTTCATTGAAGAGCGGGGTTTTAGCTGCAAGCTCCCACAGTCCATGACGAATCAAATCTCCTAGCTCAAATGGGAGTTAATCTACGAGACCTTCCCAGACTATTCCCCTGCACTGGTGATCGACTTCTATAGAGCACGGTGGCAAGACAAAATAGATGAAGTCCTGGTGCGCGGCCATTCAATTGCATTTGCCCCCGCATTTATCAACTCCATATTTGAGCTTCAGGACCTGCCCGACGCAGAGGGTAATGCACTACTTTCTCTCAAGATCAGGACTTCCTAACAGCAGTTCTAGCTGCAGTGGCTCGCCCAGGTGCCAGCTGGGATGGGCGAGGAGCTTCAAGAACCCTTAAGACCCAGTCCCAAGTCTTCGAAGCATCCACGTGGATGCATTGGATAAAAAACCGCATCATGCCCACAACGCATGATGCCACCCTAAGTATACCGCGGGTGGTTTTGGTCTACTGCATCCTGTGGGGAATCCCGTTGGACCTAGGTCGCATATTACTGACTCCTTGTGCCAGAATGCATCCAAATCCAAGGGCGCCATATTCCTGCTGGGGCTGA

mRNA sequence

ATGGTTGTGTTTGTTGGAGAGATCGTTGACGAACTGTTCGTTGAGGATCATAGTGCTGAGACGTTCTTGGGCTTCAACAAGATTCAATTCCTTCAAGAGGAAGCATGGAACTCCCTGTTGGGAGAGCTTGGCGTAGAAGGCGAAGCCTTGCGCCAGAAAGAAGCTGAAGCAAAGACTGCGGCAGATGAAGCTGCCAACAAAGCCGCAGAAGAAGTAGCTGCGAAAGAAAAAGAATGCGCTGAGGAGGAAGCACATATTAAGGCCGCGGAGGAGTTAGCCGCAGCAAGTCTAGCTGAAATCGCAGCGGCCCTAAATTCTCCGCCACGTGAGTCAACGTCGCCTGAGTCCGAAGATAACCTTCCGCTGACTCATCGCCGCAATTTGCAAGCAGCTGCGCTGGCTATTAGCGAGCCTTCAGAGAGCCATGCACTAGGCCCCCCCAAAAGAAAAAGGGCATCCACCGCATCCAAGGGCAAGACCTTCCCAGACTATTCCCCTGCACTGGTGATCGACTTCTATAGAGCACGGTGGCAAGACAAAATAGATGAAGTCCTGGACTTCCTAACAGCAGTTCTAGCTGCAGTGGCTCGCCCAGGTGCCAGCTGGGATGGGCGAGGAGCTTCAAGAACCCTTAAGACCCAGTCCCAAGTCTTCGAAGCATCCACGTGGATGCATTGGATAAAAAACCGCATCATGCCCACAACGCATGATGCCACCCTAAGTATACCGCGGGTGGTTTTGGTCTACTGCATCCTGTGGGGAATCCCGTTGGACCTAGGTCGCATATTACTGACTCCTTGTGCCAGAATGCATCCAAATCCAAGGGCGCCATATTCCTGCTGGGGCTGA

Coding sequence (CDS)

ATGGTTGTGTTTGTTGGAGAGATCGTTGACGAACTGTTCGTTGAGGATCATAGTGCTGAGACGTTCTTGGGCTTCAACAAGATTCAATTCCTTCAAGAGGAAGCATGGAACTCCCTGTTGGGAGAGCTTGGCGTAGAAGGCGAAGCCTTGCGCCAGAAAGAAGCTGAAGCAAAGACTGCGGCAGATGAAGCTGCCAACAAAGCCGCAGAAGAAGTAGCTGCGAAAGAAAAAGAATGCGCTGAGGAGGAAGCACATATTAAGGCCGCGGAGGAGTTAGCCGCAGCAAGTCTAGCTGAAATCGCAGCGGCCCTAAATTCTCCGCCACGTGAGTCAACGTCGCCTGAGTCCGAAGATAACCTTCCGCTGACTCATCGCCGCAATTTGCAAGCAGCTGCGCTGGCTATTAGCGAGCCTTCAGAGAGCCATGCACTAGGCCCCCCCAAAAGAAAAAGGGCATCCACCGCATCCAAGGGCAAGACCTTCCCAGACTATTCCCCTGCACTGGTGATCGACTTCTATAGAGCACGGTGGCAAGACAAAATAGATGAAGTCCTGGACTTCCTAACAGCAGTTCTAGCTGCAGTGGCTCGCCCAGGTGCCAGCTGGGATGGGCGAGGAGCTTCAAGAACCCTTAAGACCCAGTCCCAAGTCTTCGAAGCATCCACGTGGATGCATTGGATAAAAAACCGCATCATGCCCACAACGCATGATGCCACCCTAAGTATACCGCGGGTGGTTTTGGTCTACTGCATCCTGTGGGGAATCCCGTTGGACCTAGGTCGCATATTACTGACTCCTTGTGCCAGAATGCATCCAAATCCAAGGGCGCCATATTCCTGCTGGGGCTGA

Protein sequence

MVVFVGEIVDELFVEDHSAETFLGFNKIQFLQEEAWNSLLGELGVEGEALRQKEAEAKTAADEAANKAAEEVAAKEKECAEEEAHIKAAEELAAASLAEIAAALNSPPRESTSPESEDNLPLTHRRNLQAAALAISEPSESHALGPPKRKRASTASKGKTFPDYSPALVIDFYRARWQDKIDEVLDFLTAVLAAVARPGASWDGRGASRTLKTQSQVFEASTWMHWIKNRIMPTTHDATLSIPRVVLVYCILWGIPLDLGRILLTPCARMHPNPRAPYSCWG
Homology
BLAST of Spg004976 vs. NCBI nr
Match: XP_024995361.1 (formin-like protein 3 [Cynara cardunculus var. scolymus])

HSP 1 Score: 68.9 bits (167), Expect = 7.8e-08
Identity = 34/82 (41.46%), Postives = 51/82 (62.20%), Query Frame = 0

Query: 182 DEVLDFLTAVLAAVARPGASWDGRGASRTLKTQSQVFEASTWMHWIKNRIMPTTHDATLS 241
           DE LD    +LA VA  G  W  +G +R LKTQ    EA+ W +++++ I P +HD  L 
Sbjct: 401 DEELDL---ILAKVANEGVVWSFKGRARLLKTQYLKPEANIWCYFMRHTIHPMSHDTNLC 460

Query: 242 IPRVVLVYCILWGIPLDLGRIL 264
           + RV+++YCIL   P D+GR++
Sbjct: 461 LERVLILYCILEARPFDVGRMI 479

BLAST of Spg004976 vs. NCBI nr
Match: MCH80834.1 (hypothetical protein [Trifolium medium])

HSP 1 Score: 60.5 bits (145), Expect = 2.8e-05
Identity = 35/108 (32.41%), Postives = 59/108 (54.63%), Query Frame = 0

Query: 164 YSPALVIDFYRAR-----WQDKIDEVLD-FLTAVLAAVARPGASWDGRGASR--TLKTQS 223
           YS A + + Y  +     +Q  +D + D  LTAV+  +  PG  W  +       +K  S
Sbjct: 111 YSAANINNHYGLKADEDEYQTLMDNISDEELTAVMRNLTEPGTEWSMKNNVNEWCIKRMS 170

Query: 224 QVFEASTWMHWIKNRIMPTTHDATLSIPRVVLVYCILWGIPLDLGRIL 264
              E   W   +K+ I+PTTH+ T++  R+VL++CI+  IP+++GRI+
Sbjct: 171 LKPEVRVWYQLLKHTILPTTHNETVNKARIVLLHCIMEEIPINVGRII 218

BLAST of Spg004976 vs. NCBI nr
Match: PON62892.1 (hypothetical protein PanWU01x14_135680 [Parasponia andersonii])

HSP 1 Score: 58.5 bits (140), Expect = 1.0e-04
Identity = 43/127 (33.86%), Postives = 63/127 (49.61%), Query Frame = 0

Query: 179 DKIDEVLDF--------LTAVLAAVARPGASWD--GRGASRTLKTQSQVFEASTWMHWIK 238
           D +DE  +F        L  VL  VA  GA W+   +GA   L++      A  W H++K
Sbjct: 31  DPVDEHSEFVEAITEPELATVLETVAIAGAEWNVSSQGAYTCLRSSLNP-PAKVWYHFLK 90

Query: 239 NRIMPTTHDATLSIPRVVLVYCILWGIPLDLGRILLTP-CA----------------RMH 279
           +R++PTTH  T+S  RV+L+Y +L G  +++G+I+    CA                RM 
Sbjct: 91  SRLLPTTHGKTVSKERVLLLYSMLTGKSINVGQIIHREICAYAARKSGALFFPSLITRMC 150

BLAST of Spg004976 vs. NCBI nr
Match: KAA0048500.1 (protein MNN4-like [Cucumis melo var. makuwa] >TYK28291.1 protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-04
Identity = 30/76 (39.47%), Postives = 44/76 (57.89%), Query Frame = 0

Query: 192 LAAVARPGASWDGRGASR-TLKTQSQVFEASTWMHWIKNRIMPTTHDATLSIPRVVLVYC 251
           L  VA PG  WD     +  L   +    AS W+ +IK  +MPT HD T+S+ R++L+YC
Sbjct: 226 LERVAWPGMKWDITPIKKYQLFPHNLKTTASVWLVFIKKNLMPTRHDNTISLERIMLLYC 285

Query: 252 ILWGIPLDLGRILLTP 267
           I+  IPL++  I+  P
Sbjct: 286 IMEEIPLNVDEIIYEP 301

BLAST of Spg004976 vs. NCBI nr
Match: XP_038904385.1 (uncharacterized protein LOC120090747 [Benincasa hispida])

HSP 1 Score: 57.4 bits (137), Expect = 2.3e-04
Identity = 35/108 (32.41%), Postives = 57/108 (52.78%), Query Frame = 0

Query: 157 KGKTFPDYSPALVIDFYRARWQDKIDEVLDFLTAVLAAVARPGASWD-GRGASRTLKTQS 216
           K K  PD S   +ID  +   ++K+++ L  LT       + G  W       +TL +  
Sbjct: 250 KMKDIPDASGNKIIDDPQ---EEKMEDALRTLT-------QSGTQWSVSLKGIKTLASSK 309

Query: 217 QVFEASTWMHWIKNRIMPTTHDATLSIPRVVLVYCILWGIPLDLGRIL 264
            + EA  W++ +K RI+PT+HD T+S  RV+  YCI  GI +D+  ++
Sbjct: 310 LLPEARLWVYLVKRRIIPTSHDKTVSRDRVMAAYCIACGILIDVSHLI 347

BLAST of Spg004976 vs. ExPASy TrEMBL
Match: A0A392M2J7 (Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0001608 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-05
Identity = 35/108 (32.41%), Postives = 59/108 (54.63%), Query Frame = 0

Query: 164 YSPALVIDFYRAR-----WQDKIDEVLD-FLTAVLAAVARPGASWDGRGASR--TLKTQS 223
           YS A + + Y  +     +Q  +D + D  LTAV+  +  PG  W  +       +K  S
Sbjct: 111 YSAANINNHYGLKADEDEYQTLMDNISDEELTAVMRNLTEPGTEWSMKNNVNEWCIKRMS 170

Query: 224 QVFEASTWMHWIKNRIMPTTHDATLSIPRVVLVYCILWGIPLDLGRIL 264
              E   W   +K+ I+PTTH+ T++  R+VL++CI+  IP+++GRI+
Sbjct: 171 LKPEVRVWYQLLKHTILPTTHNETVNKARIVLLHCIMEEIPINVGRII 218

BLAST of Spg004976 vs. ExPASy TrEMBL
Match: A0A2P5CPE8 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_135680 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.1e-05
Identity = 43/127 (33.86%), Postives = 63/127 (49.61%), Query Frame = 0

Query: 179 DKIDEVLDF--------LTAVLAAVARPGASWD--GRGASRTLKTQSQVFEASTWMHWIK 238
           D +DE  +F        L  VL  VA  GA W+   +GA   L++      A  W H++K
Sbjct: 31  DPVDEHSEFVEAITEPELATVLETVAIAGAEWNVSSQGAYTCLRSSLNP-PAKVWYHFLK 90

Query: 239 NRIMPTTHDATLSIPRVVLVYCILWGIPLDLGRILLTP-CA----------------RMH 279
           +R++PTTH  T+S  RV+L+Y +L G  +++G+I+    CA                RM 
Sbjct: 91  SRLLPTTHGKTVSKERVLLLYSMLTGKSINVGQIIHREICAYAARKSGALFFPSLITRMC 150

BLAST of Spg004976 vs. ExPASy TrEMBL
Match: A0A5A7TZE0 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001090 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.6e-05
Identity = 30/76 (39.47%), Postives = 44/76 (57.89%), Query Frame = 0

Query: 192 LAAVARPGASWDGRGASR-TLKTQSQVFEASTWMHWIKNRIMPTTHDATLSIPRVVLVYC 251
           L  VA PG  WD     +  L   +    AS W+ +IK  +MPT HD T+S+ R++L+YC
Sbjct: 226 LERVAWPGMKWDITPIKKYQLFPHNLKTTASVWLVFIKKNLMPTRHDNTISLERIMLLYC 285

Query: 252 ILWGIPLDLGRILLTP 267
           I+  IPL++  I+  P
Sbjct: 286 IMEEIPLNVDEIIYEP 301

BLAST of Spg004976 vs. ExPASy TrEMBL
Match: A0A6A2YYY2 (DNA-directed RNA polymerase V subunit 5C-like OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111128pilonHSYRG00157 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-04
Identity = 27/97 (27.84%), Postives = 57/97 (58.76%), Query Frame = 0

Query: 169  VIDFYRARWQDKIDEVLDFLTAVLAAVARPGASWDGRGASR-TLKTQSQVFEASTWMHWI 228
            VID + A +  + D   +    +L  +  P   W+G+   R T+     + +   W H++
Sbjct: 1352 VIDDHHASFAQEADN--ETYQGILEDLCLPDTQWNGQQLRRKTVDRDRLLPQVKLWNHFM 1411

Query: 229  KNRIMPTTHDATLSIPRVVLVYCILWGIPLDLGRILL 265
            K++++PT+H+ T+S  R++L++ I+ G P+D+G+I++
Sbjct: 1412 KHKLLPTSHNTTVSCQRMLLLHSIISGRPIDVGKIIV 1446

BLAST of Spg004976 vs. ExPASy TrEMBL
Match: A0A6A2ZUE4 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110733pilonHSYRG00282 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-04
Identity = 28/102 (27.45%), Postives = 56/102 (54.90%), Query Frame = 0

Query: 164 YSPALVIDFYRARWQDKIDEVLDFLTAVLAAVARPGASWDGRGASR-TLKTQSQVFEAST 223
           Y    V D +   +  ++D   +    +L  +  PG  W+G+   R T+     +     
Sbjct: 108 YFKLQVADDHNTSFAQEVDH--ETYQGILEDLCLPGTRWNGQQLKRKTVDRDRLLPHVKL 167

Query: 224 WMHWIKNRIMPTTHDATLSIPRVVLVYCILWGIPLDLGRILL 265
           W H++K+++MPT+H+ T+S  R++L++ IL G  +D+G+I++
Sbjct: 168 WNHFMKHKLMPTSHNTTVSCQRMLLLHSILTGRTIDIGKIIV 207

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_024995361.17.8e-0841.46formin-like protein 3 [Cynara cardunculus var. scolymus][more]
MCH80834.12.8e-0532.41hypothetical protein [Trifolium medium][more]
PON62892.11.0e-0433.86hypothetical protein PanWU01x14_135680 [Parasponia andersonii][more]
KAA0048500.11.4e-0439.47protein MNN4-like [Cucumis melo var. makuwa] >TYK28291.1 protein MNN4-like [Cucu... [more]
XP_038904385.12.3e-0432.41uncharacterized protein LOC120090747 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A392M2J71.3e-0532.41Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0001608... [more]
A0A2P5CPE85.1e-0533.86Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_135680 PE... [more]
A0A5A7TZE06.6e-0539.47Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G00... [more]
A0A6A2YYY21.1e-0427.84DNA-directed RNA polymerase V subunit 5C-like OS=Hibiscus syriacus OX=106335 GN=... [more]
A0A6A2ZUE41.1e-0427.45Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110733pilon... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 50..92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 136..158

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg004976.1Spg004976.1mRNA