Spg004972 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg004972
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Locationscaffold9: 22896848 .. 22900860 (+)
RNA-Seq ExpressionSpg004972
SyntenySpg004972
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAAACGAGATTTATTGTTTGAAAGAGGTTTTGGTGAAGATTTACCGCATTTCTTGAGGGCTGGAATGGCAAATCACGGGTGGAGTCAATTCTGTGCAAAACCAGATCCATTAAATTCGAACATTGTTCGTGAATTTTACGGGAACATAGATGATCAAGAAGGATTCCAAGTCATGGTTCGAGGGGTGGCTGTCGATTAGAGCCTAGGAGCAATAAACTCTCCCTTCAACCTCCAGCAGATTTTCTGTTTTTAGGCCACGAAAATATCTGCTGATGTAAATCTTTTCCTTGGTTTTTAATAAAATTTCCTAGTTGTTTCTGTTCTATAGCACTGAGCATTCCTAACTTAACCATTTTCTTCTGAATTTTTGAAGCTCGGACTAGTTAGCTTAATTAGATCAAGGTGTTCTGATCTCCAGAAACCTTTTTGTAAACCCGAGACTTTCCTTGGGTCATTTCCTCTTGTCATCTATTGTGAACGTTGGACTTAAGTTGTGTGGTTTCATTGTTGAAGGAAAATGGCAAGCTTTTAGTTCAAGTTGTTTTTTTTAACCTTGGAGTTTATTCAAAGAAAAGGAGAATGAAAGGAAAGGAAAAGAAGAAAAGAAAAGAAATGGGAAAGGAAAGAAAACCAAAAAAAAAAAAAAAAAAAGAGAAGAAAAAGAAAAGAAAGTAAATGGGAAATGACAGCAAACCTTCCACCACCGCTTCACCCATTTTCAGCCCACTTCCAGCCACATTCCTCATCTTTTTCCATCCACATTTTCAGAGCACTTGAGGGATAGAGTGAAGGAAGAAGAAGAAGAAGATTTTCATGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAACCATAGCAGAATCTGAGTTCAACCTGTCAACCCCTGGTTTTTTATTCGGTTTGAGCTACATAGAAGGAATTAAGAGGTGAGGTTTGATTTTCATGAAAGTTAATCCATTTTCTAACCAATTTCATGAAGGAAGCTTGAGCTAAATCTGATGAGATGTTTATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTCGTGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAAGTTTATTCAATTTCCTACAACTTTCATGAAGAATTCGTGAGCCAAAAATGAATTGAAGTAGGTTTATTGTCAGGAGAAAGATAAAGGGCAGCAGAGAACCTCGAATCCGTGTTGTCTATGTTCGGGGCGTTTCTGGACAAATTGGTTGAGAATCTCGTTTTCATTTCTTCAGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATATATAGTACATTACTTTGGTTATGTATTGAGGAAGTTATGGGTGTTGGAAGGTGTGGTATTGAATCTGGAAAATCTGGAAAGTAGAATGTGGAGTGAGATTTCTTATTCAAGTGTTTAGAATTCATGAGCATGGAAAGACAAAGCTAATTATGGTTCTAGTGCTCGGTTTTGGTTGTTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTGTGAGTGACAAAATGAATTTCGAAAATTGTTTCCAATGGTTGTTCATGTTTAGACGTTTTATATGCTTTTCTATGAATGATACATGATTTCTATGAACGGTTTCAAGCATAAGTTTTGAGCTTAGATTTTCTAATGAGGTTTATATACGAGCACGTGGTTAATGACTTTATAACAAGTAGTTGAAACGATATATTTTGAAGTAAAGTATGCATTAGCAAGTATTTTTTTTAAAGATTTTCAGTTTTTTCACGAGCAAGCTGAGTACACTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTCTAATGTTTTCATGTGATTTTCTGAGATTTCTATAGACTACATGACTGAGATATTGAACCCGAGGCTCTATGGTACCGTGTGCACACAGGTTATATTCCATTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAATGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAATGTTTGATGTACTTGATATGCCTTGCTAGATATTTAATAACGTACTTGCGAGTTATTTGAGAAAGCTTTTATCGTTACACGTTTATGTTAAATGCTTGATTGAACAGATTTATACGCTTAAAGGTTTATCACGTGTTCCGATTTGCAAATCTACAGTTTTTAAAGCTAGTCACTCACTGGGCTTCATAGCTCATTCTTTCAAAATGTTTTTCCACTTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAATAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCCATATTGTAATGTTTTGTAAGGGTTGGATAATTTACGGTTTAATTTAAGTTCTAGAGATCGTGGTTGTATAAACCCCAGTTGAATATGTTTTGGGTTGTGATATCTATATCAGGTTATTTTCCAAACCGAGTTATGTCAGGGCTGCACGTCGCGTATGTTAAAAGCTTTCCAGGGATTCCGCTGTGTTGTGTTTCATGTAGAATATTTTATATCTATGATTAGTATGTTTATCAGGTTCAACGTTTCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTCCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACACTTTTGCTTGAGCATTTCTTCTAGCCTGGTCATCGCCGCGGCAAGAAGATTTTGAGGTAGTATTGACTTATTTTGATCCACCTTAAGCTTAATTCTTGTCCCACGCTTAGTTTAAAATTCAGATAGAAAAATTTAAGTTTGGGGTTATAATTTATCATGCTAATAATTCACTGGGGACACTGAATAATTTAAGTTTGGGGGACTTTTTGCTACTTCGCTTGTTTTGCTCGAGCATTCCGCTCCTTCATAATTATTTTTCTAGTTTGTTGAGTAACCAGAGACATTTGTGACACCTACAGTTTGTCTTTGCGTCAAAAGATGACCTAGGAAATATTGAAAAATGAGAAAAATTAATTGCTGAAAAAAAATTGTTGAAAATTTTGCTTAGAAAATTCATAGAGCAAAAGTTTTGAAGGATGAATGATAATCTAGCAGTTTTTCTGTCTCCCAGGGCTTAGGTGAGCTTCATCATAAAATGTCGCCATTCTGAGAAGCAAGGGATAGAATAAATAAAGATTTTTGAGCTAGCAATGGGTATTTAGCCTAAGTTAGTGTTGAGTTTGAGGCAAGGGTATACTGCACCATAAAGTGGGTCATCTCATGCTTAAGAGCTTATGACTGTAGGGCTGCTTTAAGTCTGAAGAACTAAAGAAATAAAACCCCTTAAAAATGTGTTTAAATATGTCTGATAATAGAGCTAGGTTGTGGCAAGTTCTTAAGATTGAGTAAAAGGTGGTGATTATCTGTTCAATGCTGAAAGAATTATTTTGCTGCAGCAGTGCTTGGTTTTGCAGAATGCTCAGGTAAAGGTTGAAGGTAGTGTTGGATTATCTGTTTGATTGAGTTACGCTATGTCTAATGTTTTAATTCTGAAGGGAAGGTTAGTTAGTATTGCTCGGGAAGCGCAATAGTTCAAGTTTGGGGGTATGATAACTCTCTAAAAGGGAGTTATTTAGGCCTTATTTCTATAATTTTTTGTGTGTCATTCGTGTTAAAAAGGGTTGCTTTTAGATGAATACTATATGTTTTAACCCATTTGGAAGAATGGATGCTTTGGAAGTTATTTTGTGTAGAATATGATGCTAAGCGACTTGAGGGAGCAAAAATCCGTGATCCAGCAAAGCAGGGAGCAAAATTGCCACGTAAGCTGCACGTAATCCATTTTATGAAGTGA

mRNA sequence

ATGTTGAAACGAGATTTATTGTTTGAAAGAGGTTTTGGTGAAGATTTACCGCATTTCTTGAGGGCTGGAATGGCAAATCACGGGTGGAGTCAATTCTGTGCAAAACCAGATCCATTAAATTCGAACATTGTTCGTGAATTTTACGGGAACATAGATGATCAAGAAGGATTCCAAGTCATGGTTCGAGGGCTCGGACTAGTTAGCTTAATTAGATCAAGGAAGAAGAAGAAGAAGATTTTCATGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAACCATAGCAGAATCTGAGTTCAACCTGTCAACCCCTGGTTTTTTATTCGGTTTGAGCTACATAGAAGGAATTAAGAGGATTTTCGTGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAATAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCCATATTGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTCCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGCAGTGCTTGGTTTTGCAGAATGCTCAGAATATGATGCTAAGCGACTTGAGGGAGCAAAAATCCGTGATCCAGCAAAGCAGGGAGCAAAATTGCCACGTAAGCTGCACGTAATCCATTTTATGAAGTGA

Coding sequence (CDS)

ATGTTGAAACGAGATTTATTGTTTGAAAGAGGTTTTGGTGAAGATTTACCGCATTTCTTGAGGGCTGGAATGGCAAATCACGGGTGGAGTCAATTCTGTGCAAAACCAGATCCATTAAATTCGAACATTGTTCGTGAATTTTACGGGAACATAGATGATCAAGAAGGATTCCAAGTCATGGTTCGAGGGCTCGGACTAGTTAGCTTAATTAGATCAAGGAAGAAGAAGAAGAAGATTTTCATGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAACCATAGCAGAATCTGAGTTCAACCTGTCAACCCCTGGTTTTTTATTCGGTTTGAGCTACATAGAAGGAATTAAGAGGATTTTCGTGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAATAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCCATATTGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTCCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGCAGTGCTTGGTTTTGCAGAATGCTCAGAATATGATGCTAAGCGACTTGAGGGAGCAAAAATCCGTGATCCAGCAAAGCAGGGAGCAAAATTGCCACGTAAGCTGCACGTAATCCATTTTATGAAGTGA

Protein sequence

MLKRDLLFERGFGEDLPHFLRAGMANHGWSQFCAKPDPLNSNIVREFYGNIDDQEGFQVMVRGLGLVSLIRSRKKKKKIFMVLRLKKIGKAHAKPTIAESEFNLSTPGFLFGLSYIEGIKRIFVQTRRISGVLWCFEHSGVYKLNQKLYLVEIELPVPDTLPTSAESSRISSSTWVELYIESVHIEGQRVSLEEDDVRWLHAIFRAKLAGGPGGAVLGFAECSEYDAKRLEGAKIRDPAKQGAKLPRKLHVIHFMK
Homology
[Close]
BLAST of Spg004972 vs. NCBI nr
Match: KAA0052218.1 (uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK01785.1 uncharacterized protein E5676_scaffold113G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 106.7 bits (265), Expect = 3.0e-19
Identity = 70/162 (43.21%), Postives = 86/162 (53.09%), Query Frame = 0 

Query: 88  IGKAHAKPTIAESEFNLSTPGFLFGLSYIEGIKRIFVQTRRISGVLWCFE---------- 147
           I K +AKP IAES  N      LFGLSY+E ++    +    SG    F           
Sbjct: 23  IEKVNAKPAIAESGCNCQPLIVLFGLSYLEELRGESTRFLSKSGGFLVFSDALSILPRGN 82

Query: 148 ----HSGVYKLNQKLYLVEIELPVPDTLPTSAESSRISSSTWVELYIESVHI-------- 207
               H+G  KL++    VEIELPVPDTLPTSAESS+ +SSTW+ELY ESVH+        
Sbjct: 83  RPNLHTG--KLDK---TVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHVEMLFYKPS 142

Query: 208 ----------EGQRVSLEEDDVRWLHAIFRAKLAGGPGGAVL 218
                     EG    +  DD+ WLHA+F AK AG PGG V+
Sbjct: 143 DVRVASYVCWEGSAGIVRGDDLCWLHAVFWAKTAGSPGGGVM 179

[Close]
BLAST of Spg004972 vs. NCBI nr
Match: KAA0042035.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 8.3e-17
Identity = 71/177 (40.11%), Postives = 86/177 (48.59%), Query Frame = 0 

Query: 90   KAHAKPTIAESEFNLSTPGFLFGLSYIEGIKRIFVQTRRIS---GVLWCFEHS----GVY 149
            K++      + EF +    FL  LS   G+ R   +  RIS   G    F  +     V+
Sbjct: 1346 KSYVDKRRRDLEFQIGEQVFL-KLSSWRGVLRFERKEHRISSKPGGFMVFYDTLSILEVH 1405

Query: 150  KLNQKLYL-----------------VEIELPVPDTLPTSAESSRISSSTWVELYIESVHI 209
            K NQKLYL                 VEIELPVPDTLPTSAES   +SSTW+ELY ESVH+
Sbjct: 1406 KSNQKLYLVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESLESNSSTWLELYFESVHV 1465

Query: 210  E-------------------GQRVSLEEDDVRWLHAIFRAKLAGGPGGAVLGFAECS 224
            E                   G    +  DDV WLHA+FRAK AGGPGG V  + + S
Sbjct: 1466 EMFCYFTNQGMSGLHLMLNVGSVGIVRGDDVCWLHAVFRAKTAGGPGGGVTFYVQAS 1521

[Close]
BLAST of Spg004972 vs. NCBI nr
Match: TYK27998.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 8.3e-17
Identity = 48/70 (68.57%), Postives = 58/70 (82.86%), Query Frame = 0 

Query: 150 LVEIELPVPDTLPTSAESSRISSSTWVELYIESVHIEGQRVS--LEEDDVRWLHAIFRAK 209
           +VEIELPVPDTLPTSAESS  +SSTW+ELY+E VH+E   ++  + EDDV WLHA+FRAK
Sbjct: 33  VVEIELPVPDTLPTSAESSESNSSTWLELYVEFVHVEMFWLAGIVREDDVCWLHAVFRAK 92

Query: 210 LAGGPGGAVL 218
            AGGPGG V+
Sbjct: 93  TAGGPGGGVM 102

[Close]
BLAST of Spg004972 vs. NCBI nr
Match: KAA0066851.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 8.3e-17
Identity = 48/70 (68.57%), Postives = 58/70 (82.86%), Query Frame = 0 

Query: 150 LVEIELPVPDTLPTSAESSRISSSTWVELYIESVHIEGQRVS--LEEDDVRWLHAIFRAK 209
           +VEIELPVPDTLPTSAESS  +SSTW+ELY+E VH+E   ++  + EDDV WLHA+FRAK
Sbjct: 33  VVEIELPVPDTLPTSAESSESNSSTWLELYVEFVHVEMFWLAGIVREDDVCWLHAVFRAK 92

Query: 210 LAGGPGGAVL 218
            AGGPGG V+
Sbjct: 93  TAGGPGGGVM 102

[Close]
BLAST of Spg004972 vs. NCBI nr
Match: TYK17971.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 8.3e-17
Identity = 71/177 (40.11%), Postives = 86/177 (48.59%), Query Frame = 0 

Query: 90   KAHAKPTIAESEFNLSTPGFLFGLSYIEGIKRIFVQTRRIS---GVLWCFEHS----GVY 149
            K++      + EF +    FL  LS   G+ R   +  RIS   G    F  +     V+
Sbjct: 1346 KSYVDKRRRDLEFQIGEQVFL-KLSSWRGVLRFERKEHRISSKPGGFMVFYDTLSILEVH 1405

Query: 150  KLNQKLYL-----------------VEIELPVPDTLPTSAESSRISSSTWVELYIESVHI 209
            K NQKLYL                 VEIELPVPDTLPTSAES   +SSTW+ELY ESVH+
Sbjct: 1406 KSNQKLYLVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESLESNSSTWLELYFESVHV 1465

Query: 210  E-------------------GQRVSLEEDDVRWLHAIFRAKLAGGPGGAVLGFAECS 224
            E                   G    +  DDV WLHA+FRAK AGGPGG V  + + S
Sbjct: 1466 EMFCYFTNQGMSGLHLMLNVGSVGIVRGDDVCWLHAVFRAKTAGGPGGGVTFYVQAS 1521

[Close]
BLAST of Spg004972 vs. ExPASy TrEMBL
Match: A0A5A7UAH6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00130 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.5e-19
Identity = 70/162 (43.21%), Postives = 86/162 (53.09%), Query Frame = 0 

Query: 88  IGKAHAKPTIAESEFNLSTPGFLFGLSYIEGIKRIFVQTRRISGVLWCFE---------- 147
           I K +AKP IAES  N      LFGLSY+E ++    +    SG    F           
Sbjct: 23  IEKVNAKPAIAESGCNCQPLIVLFGLSYLEELRGESTRFLSKSGGFLVFSDALSILPRGN 82

Query: 148 ----HSGVYKLNQKLYLVEIELPVPDTLPTSAESSRISSSTWVELYIESVHI-------- 207
               H+G  KL++    VEIELPVPDTLPTSAESS+ +SSTW+ELY ESVH+        
Sbjct: 83  RPNLHTG--KLDK---TVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHVEMLFYKPS 142

Query: 208 ----------EGQRVSLEEDDVRWLHAIFRAKLAGGPGGAVL 218
                     EG    +  DD+ WLHA+F AK AG PGG V+
Sbjct: 143 DVRVASYVCWEGSAGIVRGDDLCWLHAVFWAKTAGSPGGGVM 179

[Close]
BLAST of Spg004972 vs. ExPASy TrEMBL
Match: A0A5D3DX39 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002140 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.0e-17
Identity = 48/70 (68.57%), Postives = 58/70 (82.86%), Query Frame = 0 

Query: 150 LVEIELPVPDTLPTSAESSRISSSTWVELYIESVHIEGQRVS--LEEDDVRWLHAIFRAK 209
           +VEIELPVPDTLPTSAESS  +SSTW+ELY+E VH+E   ++  + EDDV WLHA+FRAK
Sbjct: 33  VVEIELPVPDTLPTSAESSESNSSTWLELYVEFVHVEMFWLAGIVREDDVCWLHAVFRAK 92

Query: 210 LAGGPGGAVL 218
            AGGPGG V+
Sbjct: 93  TAGGPGGGVM 102

[Close]
BLAST of Spg004972 vs. ExPASy TrEMBL
Match: A0A5A7TKT0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G004880 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.0e-17
Identity = 71/177 (40.11%), Postives = 86/177 (48.59%), Query Frame = 0 

Query: 90   KAHAKPTIAESEFNLSTPGFLFGLSYIEGIKRIFVQTRRIS---GVLWCFEHS----GVY 149
            K++      + EF +    FL  LS   G+ R   +  RIS   G    F  +     V+
Sbjct: 1346 KSYVDKRRRDLEFQIGEQVFL-KLSSWRGVLRFERKEHRISSKPGGFMVFYDTLSILEVH 1405

Query: 150  KLNQKLYL-----------------VEIELPVPDTLPTSAESSRISSSTWVELYIESVHI 209
            K NQKLYL                 VEIELPVPDTLPTSAES   +SSTW+ELY ESVH+
Sbjct: 1406 KSNQKLYLVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESLESNSSTWLELYFESVHV 1465

Query: 210  E-------------------GQRVSLEEDDVRWLHAIFRAKLAGGPGGAVLGFAECS 224
            E                   G    +  DDV WLHA+FRAK AGGPGG V  + + S
Sbjct: 1466 EMFCYFTNQGMSGLHLMLNVGSVGIVRGDDVCWLHAVFRAKTAGGPGGGVTFYVQAS 1521

[Close]
BLAST of Spg004972 vs. ExPASy TrEMBL
Match: A0A5A7VMG9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002220 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.0e-17
Identity = 48/70 (68.57%), Postives = 58/70 (82.86%), Query Frame = 0 

Query: 150 LVEIELPVPDTLPTSAESSRISSSTWVELYIESVHIEGQRVS--LEEDDVRWLHAIFRAK 209
           +VEIELPVPDTLPTSAESS  +SSTW+ELY+E VH+E   ++  + EDDV WLHA+FRAK
Sbjct: 33  VVEIELPVPDTLPTSAESSESNSSTWLELYVEFVHVEMFWLAGIVREDDVCWLHAVFRAK 92

Query: 210 LAGGPGGAVL 218
            AGGPGG V+
Sbjct: 93  TAGGPGGGVM 102

[Close]
BLAST of Spg004972 vs. ExPASy TrEMBL
Match: A0A5D3D150 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002770 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.0e-17
Identity = 71/177 (40.11%), Postives = 86/177 (48.59%), Query Frame = 0 

Query: 90   KAHAKPTIAESEFNLSTPGFLFGLSYIEGIKRIFVQTRRIS---GVLWCFEHS----GVY 149
            K++      + EF +    FL  LS   G+ R   +  RIS   G    F  +     V+
Sbjct: 1346 KSYVDKRRRDLEFQIGEQVFL-KLSSWRGVLRFERKEHRISSKPGGFMVFYDTLSILEVH 1405

Query: 150  KLNQKLYL-----------------VEIELPVPDTLPTSAESSRISSSTWVELYIESVHI 209
            K NQKLYL                 VEIELPVPDTLPTSAES   +SSTW+ELY ESVH+
Sbjct: 1406 KSNQKLYLVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESLESNSSTWLELYFESVHV 1465

Query: 210  E-------------------GQRVSLEEDDVRWLHAIFRAKLAGGPGGAVLGFAECS 224
            E                   G    +  DDV WLHA+FRAK AGGPGG V  + + S
Sbjct: 1466 EMFCYFTNQGMSGLHLMLNVGSVGIVRGDDVCWLHAVFRAKTAGGPGGGVTFYVQAS 1521

The following BLAST results are available for this feature:
BLAST of Spg004972 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0052218.13.0e-1943.21uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK0... [more]
KAA0042035.18.3e-1740.11DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
TYK27998.18.3e-1768.57reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0066851.18.3e-1768.57reverse transcriptase [Cucumis melo var. makuwa][more]
TYK17971.18.3e-1740.11DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
BLAST of Spg004972 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg004972 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UAH61.5e-1943.21CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5D3DX394.0e-1768.57Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38... [more]
A0A5A7TKT04.0e-1740.11Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67... [more]
A0A5A7VMG94.0e-1768.57Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... [more]
A0A5D3D1504.0e-1740.11Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold30... [more]
BLAST of Spg004972 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg004972.1Spg004972.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity