Spg004951 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg004951
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Locationscaffold9: 20308137 .. 20309458 (-)
RNA-Seq ExpressionSpg004951
SyntenySpg004951
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGCGAGTGTTGGGCGAGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTTGATATGCCTTGCTAGATTTTAATGACGAACTTGCGAGATATTTTAGAAAGCCTTTTTCATTACACGTTTATGTTAAACGCTTGAATTGAGCATATCTATACGTTTAAAGGTTTATCACGTGTTTTGACTTCCGGATTTAGAGTTTTAAAGTTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTCAAAATGTTTTTCCACTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAAGGATTGGATAATATAGTCCTAGAGGTCGTGGTTGTATAAACCCTAGTTGTATATGTTTTGGTTGTGACATCTATATCAGGTTATTATCCGAACCAAGTTATGTCAGGGCGGCACCTCGTGTTTGTTGGAAGTTTTTTTTCAGGGATTCCGCTGTGTTCTGTTTCATGTAGAATGTTTTATATCTATGATTAGTATGTTTGTCAGGTTCAACGTTCAGGAGGGTCAGCGGGTATCGCTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGTCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAATCACGATGTACGAAAATTGTTTTATCCTCTCCAAAAATAGTGTCACTCAATTTGATAGGAATTGTGTCATCCCCTCCCATGGAAAGAGCGACATATCGATTCAGCAACTTGATGGTAACGTGGATATCTGTATGTTCGAAAGATTGTGCAACGGACACATTCCTTTTAGGTTTTGCGGGAGAACATACCTAACACAAACATAATTACAATATGTAAATAAGGAAAACAAAACATGTACATTTAAGTTGAAGAAGACATACATACCTTTTTCTTGTTATTCAAAATCACAAGCTCGCGAGGCCATGCCACGAAGCTACTCTTTGCTTGACTAAGCGTCTCTATTTCTCCAACCACAGGAATTGGTATGAGAACATCTTCGCCTGTGATCATATCCACCACCACTCGAACATTATTGGCTCCTAGTGGTACTCCATGA

mRNA sequence

ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGCTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGTCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAATCACGATGTACGAAAATTGTTTTATCCTCTCCAAAAATAGTGTCACTCAATTTGATAGGAATTGTGTCATCCCCTCCCATGGAAAGAGCGACATATCGATTCAGCAACTTGATGGTAACGTGGATATCTGA

Coding sequence (CDS)

ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGCTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGTCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAATCACGATGTACGAAAATTGTTTTATCCTCTCCAAAAATAGTGTCACTCAATTTGATAGGAATTGTGTCATCCCCTCCCATGGAAAGAGCGACATATCGATTCAGCAACTTGATGGTAACGTGGATATCTGA

Protein sequence

MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRSKLAGGPGGGVTITMYENCFILSKNSVTQFDRNCVIPSHGKSDISIQQLDGNVDI
Homology
[Close]
BLAST of Spg004951 vs. NCBI nr
Match: TYK27998.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 3.4e-22
Identity = 63/107 (58.88%), Postives = 71/107 (66.36%), Query Frame = 0 

Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVE 60
           MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SSTW+E
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  LYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRSKLAGGPGGGV 91
           LY+E VH+              + EDDV WLHA+FR+K AGGPGGGV
Sbjct: 61  LYVEFVHVEMFWL------AGIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]
BLAST of Spg004951 vs. NCBI nr
Match: KAA0066851.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 3.4e-22
Identity = 63/107 (58.88%), Postives = 71/107 (66.36%), Query Frame = 0 

Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVE 60
           MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SSTW+E
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  LYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRSKLAGGPGGGV 91
           LY+E VH+              + EDDV WLHA+FR+K AGGPGGGV
Sbjct: 61  LYVEFVHVEMFWL------AGIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]
BLAST of Spg004951 vs. NCBI nr
Match: KAA0062407.1 (uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa] >TYK26574.1 uncharacterized protein E5676_scaffold313G001830 [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 7.7e-22
Identity = 61/110 (55.45%), Postives = 76/110 (69.09%), Query Frame = 0 

Query: 1   MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI--------- 60
           MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS ++ +TW+ELY ESVH+         
Sbjct: 1   MTEILSLRLYGTVCTQVKIELPMPDTLPTSAESSESNFNTWLELYFESVHVEIFCYFTNQ 60

Query: 61  ----VNVLFNVQEGQRVSLEEDDVRWLHAIFRSKLAGGPGGGVTITMYEN 98
               ++++FNV  G    +  DDV WLHA+FR K A  PG  VT T Y++
Sbjct: 61  VMSGLHLVFNVSVGSTGIVRGDDVCWLHAVFRDKTAVDPGECVT-TWYQS 109

[Close]
BLAST of Spg004951 vs. NCBI nr
Match: TYK08952.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 105.9 bits (263), Expect = 2.7e-19
Identity = 61/118 (51.69%), Postives = 71/118 (60.17%), Query Frame = 0 

Query: 1    MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVE 60
            MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   ++SSTW+E
Sbjct: 1286 MTEILSLRLDGTVCTQVIFPLSTLSVLRDNNAVVEIELPVPDTLPTSAEIFESNSSTWLE 1345

Query: 61   LYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRWLHAIFRSKLAGGPGGGVT 92
            LY+ESVH+  + +             EG    +  DDV WLHA+FR+K AGGP GGVT
Sbjct: 1346 LYLESVHVEMLFYKPSDVRAASYVCWEGSAGIVRGDDVCWLHAVFRAKTAGGPEGGVT 1403

[Close]
BLAST of Spg004951 vs. NCBI nr
Match: KAA0062409.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 2.5e-17
Identity = 50/88 (56.82%), Postives = 62/88 (70.45%), Query Frame = 0 

Query: 17  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQR 76
           VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G  
Sbjct: 94  VEIELPVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFTNQVMSRLHLVFSVLVGST 153

Query: 77  VSLEEDDVRWLHAIFRSKLAGGPGGGVT 92
             +  DDV WLHA+FR+K  GGPGGGVT
Sbjct: 154 GIVRGDDVCWLHAVFRAKTVGGPGGGVT 181

[Close]
BLAST of Spg004951 vs. ExPASy TrEMBL
Match: A0A5D3DX39 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002140 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.7e-22
Identity = 63/107 (58.88%), Postives = 71/107 (66.36%), Query Frame = 0 

Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVE 60
           MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SSTW+E
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  LYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRSKLAGGPGGGV 91
           LY+E VH+              + EDDV WLHA+FR+K AGGPGGGV
Sbjct: 61  LYVEFVHVEMFWL------AGIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]
BLAST of Spg004951 vs. ExPASy TrEMBL
Match: A0A5A7VMG9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002220 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.7e-22
Identity = 63/107 (58.88%), Postives = 71/107 (66.36%), Query Frame = 0 

Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVE 60
           MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SSTW+E
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  LYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRSKLAGGPGGGV 91
           LY+E VH+              + EDDV WLHA+FR+K AGGPGGGV
Sbjct: 61  LYVEFVHVEMFWL------AGIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]
BLAST of Spg004951 vs. ExPASy TrEMBL
Match: A0A5A7V638 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001830 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.7e-22
Identity = 61/110 (55.45%), Postives = 76/110 (69.09%), Query Frame = 0 

Query: 1   MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI--------- 60
           MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS ++ +TW+ELY ESVH+         
Sbjct: 1   MTEILSLRLYGTVCTQVKIELPMPDTLPTSAESSESNFNTWLELYFESVHVEIFCYFTNQ 60

Query: 61  ----VNVLFNVQEGQRVSLEEDDVRWLHAIFRSKLAGGPGGGVTITMYEN 98
               ++++FNV  G    +  DDV WLHA+FR K A  PG  VT T Y++
Sbjct: 61  VMSGLHLVFNVSVGSTGIVRGDDVCWLHAVFRDKTAVDPGECVT-TWYQS 109

[Close]
BLAST of Spg004951 vs. ExPASy TrEMBL
Match: A0A5D3CCC7 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00430 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.3e-19
Identity = 61/118 (51.69%), Postives = 71/118 (60.17%), Query Frame = 0 

Query: 1    MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVE 60
            MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   ++SSTW+E
Sbjct: 1286 MTEILSLRLDGTVCTQVIFPLSTLSVLRDNNAVVEIELPVPDTLPTSAEIFESNSSTWLE 1345

Query: 61   LYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRWLHAIFRSKLAGGPGGGVT 92
            LY+ESVH+  + +             EG    +  DDV WLHA+FR+K AGGP GGVT
Sbjct: 1346 LYLESVHVEMLFYKPSDVRAASYVCWEGSAGIVRGDDVCWLHAVFRAKTAGGPEGGVT 1403

[Close]
BLAST of Spg004951 vs. ExPASy TrEMBL
Match: A0A5A7V9N3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G002110 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-17
Identity = 50/88 (56.82%), Postives = 62/88 (70.45%), Query Frame = 0 

Query: 17  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQR 76
           VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G  
Sbjct: 94  VEIELPVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFTNQVMSRLHLVFSVLVGST 153

Query: 77  VSLEEDDVRWLHAIFRSKLAGGPGGGVT 92
             +  DDV WLHA+FR+K  GGPGGGVT
Sbjct: 154 GIVRGDDVCWLHAVFRAKTVGGPGGGVT 181

The following BLAST results are available for this feature:
BLAST of Spg004951 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK27998.13.4e-2258.88reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0066851.13.4e-2258.88reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0062407.17.7e-2255.45uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa] >TYK... [more]
TYK08952.12.7e-1951.69DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0062409.12.5e-1756.82reverse transcriptase [Cucumis melo var. makuwa][more]
BLAST of Spg004951 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg004951 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DX391.7e-2258.88Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38... [more]
A0A5A7VMG91.7e-2258.88Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... [more]
A0A5A7V6383.7e-2255.45Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CCC71.3e-1951.69DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7V9N31.2e-1756.82Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15... [more]
BLAST of Spg004951 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg004951.1Spg004951.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090304 nucleic acid metabolic process
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0016740 transferase activity