Spg004930 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg004930
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Girdin-like
Location	scaffold9: 22239910 .. 22240415 (+)
RNA-Seq Expression	Spg004930
Synteny	Spg004930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTACCTTCAAGGCCTATAGCATATCGATGTGGACAATTACCTTTCGTCCCATTGTTAAGGGCCCTGGGGAGGTATCGCTTACATGCCATTATTAGCGTTGCGTCAAGTATGGCTGAAGTAATTTGTCCCAACTATCCAAGACTGGGAATTCTCGTATGATTCTGGTGCGACAAGTGCCCAGATCCATCAGGCAGTGGAGGCATGGAAAATAGTGAAAAAGATGAAAAACGCACGACACTACGAGGGCATAACAACGCCATTTGAGAATTGGAGAGCAGCTCGAAATGGATTCGAGATTGTCATTCCGCCAGAATCAATAGCTTCAAGTGATACTTTGAAGATGGACCAAGCTCACTCAGAGAGAAACTTGGAACGTTTAGAGGAAAGAAATCTTGTCGTGGTAAGAGAAAATAGAGGATTAAAAGACGAGGTCAAACGATGGGTCGAGCATGCTATCAGTATTCAGAAGCAGCTAGACGAGGCCAAACGACAGTTGAAATGA

mRNA sequence

ATGGTTACCTTCAAGGCCTATAGCATATCGATGTGGACAATTACCTTTCGTCCCATTGTTAAGGGCCCTGGGGAGATCCATCAGGCAGTGGAGGCATGGAAAATAGTGAAAAAGATGAAAAACGCACGACACTACGAGGGCATAACAACGCCATTTGAGAATTGGAGAGCAGCTCGAAATGGATTCGAGATTGTCATTCCGCCAGAATCAATAGCTTCAAGTGATACTTTGAAGATGGACCAAGCTCACTCAGAGAGAAACTTGGAACGTTTAGAGGAAAGAAATCTTGTCGTGGTAAGAGAAAATAGAGGATTAAAAGACGAGGTCAAACGATGGGTCGAGCATGCTATCAGTATTCAGAAGCAGCTAGACGAGGCCAAACGACAGTTGAAATGA

Coding sequence (CDS)

ATGGTTACCTTCAAGGCCTATAGCATATCGATGTGGACAATTACCTTTCGTCCCATTGTTAAGGGCCCTGGGGAGATCCATCAGGCAGTGGAGGCATGGAAAATAGTGAAAAAGATGAAAAACGCACGACACTACGAGGGCATAACAACGCCATTTGAGAATTGGAGAGCAGCTCGAAATGGATTCGAGATTGTCATTCCGCCAGAATCAATAGCTTCAAGTGATACTTTGAAGATGGACCAAGCTCACTCAGAGAGAAACTTGGAACGTTTAGAGGAAAGAAATCTTGTCGTGGTAAGAGAAAATAGAGGATTAAAAGACGAGGTCAAACGATGGGTCGAGCATGCTATCAGTATTCAGAAGCAGCTAGACGAGGCCAAACGACAGTTGAAATGA

Protein sequence

MVTFKAYSISMWTITFRPIVKGPGEIHQAVEAWKIVKKMKNARHYEGITTPFENWRAARNGFEIVIPPESIASSDTLKMDQAHSERNLERLEERNLVVVRENRGLKDEVKRWVEHAISIQKQLDEAKRQLK

Homology

[Close]

BLAST of Spg004930 vs. NCBI nr
Match: TYK16834.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 108.6 bits (270), Expect = 4.1e-20
Identity = 59/132 (44.70%), Postives = 80/132 (60.61%), Query Frame = 0


Query: 12  WTITFRPIVKG-------------PGEIHQAVEAWKIVKKMKNARHYEGITTPFENWRAA 71
           W+  F P+V G               +IH+AVEAWK VKKMK+ RH EG T  ++NWRA+
Sbjct: 255 WSKQFAPVVCGLEDWEFSYESNIANNKIHEAVEAWKFVKKMKSLRHCEGTTEQYDNWRAS 314

Query: 72  RNGFEIVIPPESIASSDTLKMDQAHSERNLERLEERNLVVVRENRGLKDEVKRWVEHAIS 131
           RNG  I    ES+  +  LK      E+ L+RL E N V+  EN  L++EVK+WV+ A++
Sbjct: 315 RNGITINAMSESLVPNIELK-KYHDKEKELKRLREMNCVMATENEKLREEVKKWVQQAVN 374

[Close]

BLAST of Spg004930 vs. NCBI nr
Match: KAA0032013.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 108.6 bits (270), Expect = 4.1e-20
Identity = 59/132 (44.70%), Postives = 80/132 (60.61%), Query Frame = 0


Query: 12  WTITFRPIVKG-------------PGEIHQAVEAWKIVKKMKNARHYEGITTPFENWRAA 71
           W+  F P+V G               +IH+AVEAWK VKKMK+ RH EG T  ++NWRA+
Sbjct: 191 WSKQFAPVVCGLEDWEFSYESNIANNKIHEAVEAWKFVKKMKSLRHCEGTTEQYDNWRAS 250

Query: 72  RNGFEIVIPPESIASSDTLKMDQAHSERNLERLEERNLVVVRENRGLKDEVKRWVEHAIS 131
           RNG  I    ES+  +  LK      E+ L+RL E N V+  EN  L++EVK+WV+ A++
Sbjct: 251 RNGITINAMSESLVPNIELK-KYHDKEKELKRLREMNCVMATENEKLREEVKKWVQQAVN 310

[Close]

BLAST of Spg004930 vs. NCBI nr
Match: KAA0033221.1 (uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 102.8 bits (255), Expect = 2.3e-18
Identity = 56/132 (42.42%), Postives = 81/132 (61.36%), Query Frame = 0


Query: 12  WTITFRPIVKG-------------PGEIHQAVEAWKIVKKMKNARHYEGITTPFENWRAA 71
           W+  F P+V G               +IH+AVEAWK VKKMK+ RH EG T  ++NWRA+
Sbjct: 329 WSKQFAPVVCGLEDWEFSYESNIANDKIHEAVEAWKFVKKMKSLRHCEGTTEQYDNWRAS 388

Query: 72  RNGFEIVIPPESIASSDTLKMDQAH-SERNLERLEERNLVVVRENRGLKDEVKRWVEHAI 130
           RNG  I + P S +    +++ + H  E+ L+RL E N V+  EN  L++EVK+WV+ A+
Sbjct: 389 RNG--ITMNPMSESLVPNIELKKYHDKEKELKRLREMNCVLATENEKLREEVKKWVQQAV 448

[Close]

BLAST of Spg004930 vs. NCBI nr
Match: KAA0036941.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 3.9e-10
Identity = 41/110 (37.27%), Postives = 68/110 (61.82%), Query Frame = 0


Query: 24  GEIHQAVEAWKIVKKMKNARHYEGITTPFENWRAARNGFEIVIPPESIASSDTLKMDQAH 83
           G+  QAV AWK ++K+K+  HYEG+T+ +E W+A R    I I  E + S      +Q +
Sbjct: 359 GKKRQAVCAWKSIRKIKDKGHYEGVTSGYEAWQANRRKNIIDISREVVESGKETSFEQPN 418

Query: 84  S--ERNLERLEERNLVVVRENRGLKDEVKRWVEHAISIQKQLDEAKRQLK 132
              E+++E LEE+N ++ +EN  L+ E  +W++HA  +Q +L++ K  LK
Sbjct: 419 QWIEKSIE-LEEKNRLLEQENEKLRKETSQWMDHATYLQNELEKTKSFLK 467

[Close]

BLAST of Spg004930 vs. NCBI nr
Match: KAA0066094.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-09
Identity = 40/110 (36.36%), Postives = 67/110 (60.91%), Query Frame = 0


Query: 24  GEIHQAVEAWKIVKKMKNARHYEGITTPFENWRAARNGFEIVIPPESIASSDTLKMDQAH 83
           G+  QAV AWK ++K+K+  HYEG+T+ +E W+A R    I I  E +        +Q +
Sbjct: 274 GKKRQAVCAWKSIRKIKDKGHYEGVTSGYEAWQANRRKNIIDISREVVERGKKTSFEQPN 333

Query: 84  S--ERNLERLEERNLVVVRENRGLKDEVKRWVEHAISIQKQLDEAKRQLK 132
              E+++E LEE+N ++ +EN  L+ E  +W++HA  +Q +L++ K  LK
Sbjct: 334 QWIEKSIE-LEEKNRLLEQENEKLRKETSQWMDHATYLQNELEKTKSFLK 382

[Close]

BLAST of Spg004930 vs. ExPASy TrEMBL
Match: A0A5A7SNY0 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G001110 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.0e-20
Identity = 59/132 (44.70%), Postives = 80/132 (60.61%), Query Frame = 0


Query: 12  WTITFRPIVKG-------------PGEIHQAVEAWKIVKKMKNARHYEGITTPFENWRAA 71
           W+  F P+V G               +IH+AVEAWK VKKMK+ RH EG T  ++NWRA+
Sbjct: 191 WSKQFAPVVCGLEDWEFSYESNIANNKIHEAVEAWKFVKKMKSLRHCEGTTEQYDNWRAS 250

Query: 72  RNGFEIVIPPESIASSDTLKMDQAHSERNLERLEERNLVVVRENRGLKDEVKRWVEHAIS 131
           RNG  I    ES+  +  LK      E+ L+RL E N V+  EN  L++EVK+WV+ A++
Sbjct: 251 RNGITINAMSESLVPNIELK-KYHDKEKELKRLREMNCVMATENEKLREEVKKWVQQAVN 310

[Close]

BLAST of Spg004930 vs. ExPASy TrEMBL
Match: A0A5D3D0S2 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G001090 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.0e-20
Identity = 59/132 (44.70%), Postives = 80/132 (60.61%), Query Frame = 0


Query: 12  WTITFRPIVKG-------------PGEIHQAVEAWKIVKKMKNARHYEGITTPFENWRAA 71
           W+  F P+V G               +IH+AVEAWK VKKMK+ RH EG T  ++NWRA+
Sbjct: 255 WSKQFAPVVCGLEDWEFSYESNIANNKIHEAVEAWKFVKKMKSLRHCEGTTEQYDNWRAS 314

Query: 72  RNGFEIVIPPESIASSDTLKMDQAHSERNLERLEERNLVVVRENRGLKDEVKRWVEHAIS 131
           RNG  I    ES+  +  LK      E+ L+RL E N V+  EN  L++EVK+WV+ A++
Sbjct: 315 RNGITINAMSESLVPNIELK-KYHDKEKELKRLREMNCVMATENEKLREEVKKWVQQAVN 374

[Close]

BLAST of Spg004930 vs. ExPASy TrEMBL
Match: A0A5A7SUT0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00100 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18
Identity = 56/132 (42.42%), Postives = 81/132 (61.36%), Query Frame = 0


Query: 12  WTITFRPIVKG-------------PGEIHQAVEAWKIVKKMKNARHYEGITTPFENWRAA 71
           W+  F P+V G               +IH+AVEAWK VKKMK+ RH EG T  ++NWRA+
Sbjct: 329 WSKQFAPVVCGLEDWEFSYESNIANDKIHEAVEAWKFVKKMKSLRHCEGTTEQYDNWRAS 388

Query: 72  RNGFEIVIPPESIASSDTLKMDQAH-SERNLERLEERNLVVVRENRGLKDEVKRWVEHAI 130
           RNG  I + P S +    +++ + H  E+ L+RL E N V+  EN  L++EVK+WV+ A+
Sbjct: 389 RNG--ITMNPMSESLVPNIELKKYHDKEKELKRLREMNCVLATENEKLREEVKKWVQQAV 448

[Close]

BLAST of Spg004930 vs. ExPASy TrEMBL
Match: A0A5A7T5S7 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.9e-10
Identity = 41/110 (37.27%), Postives = 68/110 (61.82%), Query Frame = 0


Query: 24  GEIHQAVEAWKIVKKMKNARHYEGITTPFENWRAARNGFEIVIPPESIASSDTLKMDQAH 83
           G+  QAV AWK ++K+K+  HYEG+T+ +E W+A R    I I  E + S      +Q +
Sbjct: 359 GKKRQAVCAWKSIRKIKDKGHYEGVTSGYEAWQANRRKNIIDISREVVESGKETSFEQPN 418

Query: 84  S--ERNLERLEERNLVVVRENRGLKDEVKRWVEHAISIQKQLDEAKRQLK 132
              E+++E LEE+N ++ +EN  L+ E  +W++HA  +Q +L++ K  LK
Sbjct: 419 QWIEKSIE-LEEKNRLLEQENEKLRKETSQWMDHATYLQNELEKTKSFLK 467

[Close]

BLAST of Spg004930 vs. ExPASy TrEMBL
Match: A0A5D3CZ50 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003770 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 7.1e-10
Identity = 40/110 (36.36%), Postives = 67/110 (60.91%), Query Frame = 0


Query: 24  GEIHQAVEAWKIVKKMKNARHYEGITTPFENWRAARNGFEIVIPPESIASSDTLKMDQAH 83
           G+  QAV AWK ++K+K+  HYEG+T+ +E W+A R    I I  E +        +Q +
Sbjct: 94  GKKRQAVCAWKSIRKIKDKGHYEGVTSGYEAWQANRRKNIIDISREVVERGKETSFEQPN 153

Query: 84  S--ERNLERLEERNLVVVRENRGLKDEVKRWVEHAISIQKQLDEAKRQLK 132
              E+++E LEE+N ++ +EN  L+ E  +W++HA  +Q +L++ K  LK
Sbjct: 154 QWIEKSIE-LEEKNRLLEQENEKLRKETSQWMDHATYLQNELEKTKSFLK 202

The following BLAST results are available for this feature:

BLAST of Spg004930 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK16834.1	4.1e-20	44.70	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]
KAA0032013.1	4.1e-20	44.70	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]
KAA0033221.1	2.3e-18	42.42	uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa]	[more]
KAA0036941.1	3.9e-10	37.27	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0066094.1	1.5e-09	36.36	girdin-like [Cucumis melo var. makuwa]	[more]

BLAST of Spg004930 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg004930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SNY0	2.0e-20	44.70	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3D0S2	2.0e-20	44.70	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7SUT0	1.1e-18	42.42	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84...	[more]
A0A5A7T5S7	1.9e-10	37.27	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=...	[more]
A0A5D3CZ50	7.1e-10	36.36	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003770 PE...	[more]

BLAST of Spg004930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 74..108
None	No IPR available	COILS	Coil	Coil	coord: 116..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg004930.1	Spg004930.1	mRNA