Spg004916 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg004916
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold9: 21566435 .. 21572055 (+)
RNA-Seq ExpressionSpg004916
SyntenySpg004916
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGTCGCTGGAGAAGACGCCGAAAATGCAACAGGAAGGACAGAGACGGATTGAGCGTGAGAGTGAACAACAGAGAGAGAGAGATCGGCTCGAAAAGAATCGCGAGAAGCTTACCCAGATTTGCATCGAATCGTTGTTACGATCTGCTGCTCGCGTCGGCGGTGGTTTGCTGCTACGACGGCGACCGGAGACGAGGAGTACTAGAGGGGCGACGGTCTATTTCTTCACGACAAGAAGAAAACAAAGATGATGGTGAAGGGGAAGGGAGGTGACGGCTGAAGGAGAAGGGAAGAAGGGGAGAAAAAGAAAAAAATAAAAATAAAATGAGCTTAGGGTTGATGGCTTGGCTAAAAATCAAGCTAATTACCAAATTTCCATCAAGCCCTATTAAGTAATTTTTTTTCCAAGTCAATTTACTCTTAAATTGAGCTTTTGATTCAATCACTTAACCGAAGTTTTGCTTAATCACTCGTAAATTGAGAAACTAACCTTCAGCTGAAATTTCGTGACGTTACACGGCGGCTGCGAACTGCGAACATGGCGGCTGCGAACTGCGGCTGAGAAGAACTAAGAACACGACTGCTATCTGCTACAAACTGAGAAGACCACGAACGACAGATGCGAACTGCTAGTGGCGTGCAAAGGAAAAAACGTGGGGGGGGGGGGGTAGAACGATGTTAGGGGTAAAGGGAGAAAGAGAGAATGAAGATCTTTAGGGTTTTATTTTCTTTTCTTTTTTCCTTATTCTTTTTCCTTTTTCTTTTATTTCTCTTAATCCATCCAAATACACAAAAAAAATTAAAAGAGAGTATTGGGTTCCTTTTTTTTCCAACTTTATCTCTTTTCTAATTAAAAATCAAATTTGAATTCCTAAAATCACTTCAAATTTGGGAGCAATTTAAACTTAAATCCAAAATCCCAAAAAAGGATAAATTTTTTGACGTTTATTGCGCGTCAAGAAACCCTTAATAATATTGACGTTTATTGCGCGTCAATATAGTAATGTTTATTGACGCTTATTAGACATCAATGAATGCAGGTCAAAAAAATCCTTTTCATTGATGACTTTTGTCCGTCAACTATGTGAAAGGCGGAGTTGGACGAAAATCTACGTAAAGTACGTTTTTAATCACATTTATTGACGCTTTTTGTCTGTCAACATAACCCATATCATTTCTTGATACCATAAAACCGTCAATATACCTATTTAATTATTAATAATTTATTTTAAAGTACAAAAATTACGTTTGTTGACGCTTTTTTTACACAAGCGTCAATAAACATAAAAAGCCAAGCGTCAATAAATGTCAAATTTGTAGTAGTGCATGTAGATTTCAAAAATAGTTGATGTCTTATATGTTGCATGGTTTTTTAATGATGTGCAGAATATGGACCAGCTACACGTTTTTGTGAAGAAGAAACTATCCTCAAGACCGGACGTGTGCATCCACAAATTCACGATCATGCCACTCCCTCTTATGGTACAACTTACTTGATATTATTTAATTACAGTTGTTCGAAGTTACACCTGTACGTGATGACGCTGAGTATTTACACTGATATATATATTGGTTTGGAATAGGATTTCTTGAACTGTCCCGAAGGCCTATACCCACAGATAAAAGGTAAGTCATTGGAAGTCACTGAAGCAAACTAGCAACGCGAGGAAACGTATTTGGACTACGCGCTAGGGTTGGACGTTGATTTTGCTCTTACATGGGCGGAGGTCGACTTTTTGTACACGGCCGCGACTATCGCGAGCATTACCTCCTCTTGGCGATGGACATGAATCGAGGTGCAATTTACGTATACGATCCCATGCCCGGGTACATCAAGCGGCCCCAAGTAGAGAAGTTTGTGGAGCTACTTCGTCATACGCTGCCGTCGTTACTGCATGCATGCGACGTATTTACACATAAGCTTGACTTGAGTAGAGAACCATGACGCATCTTCCACGCGGACACTGGGAAGCTACAATTGAACTCCCTCGACTATCACATTTTCTGTTTGAAAATTCTAGAACATCTTAGTGACTGGTTGCAGTAGGGAAAATATCATACCGTCGAAGATGAACATCTTTAGGACCCAGTATGCGTGTGAGATGTGGGCGGGGAAATTCATGTGGTGATTGGCGGGATTAGCTAGGTTTTCATGTGTTGTACTGTTCACGTGTGATGCATGGATGTAATGTATATGGTTAAATGATATTTTCGTTTCTGCATGTAAACCCGAGACTTCACTTTGATTATTTGCTCGTCACATATGATAGGAAGTTGAATTAAAGTAGTTGTTTCATTGTGGTTTCATTGTGGTTTCATTGTTGGATTAAGTTGTTGGAATTTATTAATTTAAAGAATGAAGAAAAGAAAGGAAATAAAAGGAAACAAAGAAGAAAAAGAAAAGAAAAGAAAATAGGAAAATGAAAAACAAAAAAAAGAAAAAGAAAGAAAATGGGAAAGGTTGTTGGTTGCTAGTGGTCTTAAGTAGATAATCCACCACCGTTTAAGTCATTTCAGCCCATTTTTTCCATCATTTTCCACAAAACTTCATATCATTTCGAGGGAGAGAGTGAAGGAAGAAGAAGAAGGAGCTTGCTAGGGTTTTGAGGTTGAAGAAAAGAGGAAATAGCTCAAGAAAAAGCAACCATGGAAGAATCTAGGTTCAACATGCCTATCTCTGGTGTTTTATTCGGTTGGAGCTACACAGGAAGCACTAAAAGGTGAGGCCTGGTTTTCTTTAAAGTTAATCCATTTTCTAACACATTTCATGAAGGAAACTTGAGCTAAATCTGACGTTAAGGTAATTAGTTTTGAAATGGAAAACAGAGCACAGAATTTTCGTGCAAATCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGATCATTCTGGGGTGTACAGGTTGAATTAGAAGCTCAACTTGGTATGGATGGAAAGCTTATGCACTTTCCTATAACTTTCATGAATAATTCGTTAGCCAAAAATGACTAGAAGTTGGTTTAATTTCAGTAGAAAAGTAGAAGGTAGCAAAGAAGCACGAATCTGTATTTGTTGAGTTCGGTGGATTTCTGGACAAATCTGTTGGGAATCTTGTTTTCATTCCTTCAGGTAGGTTTTAAAGGGTTCCAAAATGAAGAGTTTGATATATAGTACATTAATGTTGGGCAAGTATTGAGGTAGTTATGAGTGTTAGAAGTTAGGGTATTGAATCTGGAAAATCTGGAAAACAATTTGAAGTGCAATTTTAATTCAAGTGATTAGAATTCATGAGCATGGAAAGACAAGACTACCTTTGGTTTTGATGCTCGGTTTTTATTTGTTTGACAGGACAAGAGGAAATAGCCCGAGTCTACAGGCCAGGGAACTAGCCAAGACTGTGAGTGACAAAACAAATTTCGAAAATTATTTCTAAACGGTTGTTCATGATTAGATGTTTTACATGCTTTTCTATGAATGATACTTGATTTCTATGAATGGTTTCAAGCATAAGTTTTGAGCTTAGATTTTCTATTAAGGTTTATATACGAGCAAGTGATTAATGACTTTATGAAAAGTCGTTGAAATGATATCATTTAAAGTAAAGTATGTATTAGCAAATACTGTTAAAAGATTTTCAGTTTTTCCCGAGCAAGCTGAGTAAGATTGAGTTTTACGAAAAATAAAGATAAGCAGGCATGTTTTAAGGTTTTCATGTGATTTTTCAGAGACTTCTAATGAGTACATGACTGAGATATTGAGACCGAGGCTAGATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGATGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGATGATGGGAGTGCTGGGCAGGCCCTACTACATCGTAGAGCTACTAAACGTTGGTTGTACTGGGCGTGCCCTACACAATGTAGATTGGTCATGTTAGTTAAAACGTTTGATATACTTGATATGCCTTGCTAGATTTTAATGACATACTTGCGGAGTATTTAAGAAAGCTTTTATCTTTACTCGTTTATGCTTAACGCTTTGATTGATCAGATTTATACGTTAAAAGGTTTATAAGGTTCAACATTCAGCAGGGTGAACAGGTATAGTTAGAGGAGGACGATGTTTGTTGGCTTCACGCCATCTCCTGGACTAAGCTAGCAAGTAGTTTGAGAGGGGGTGTGACACTGCATGCCTAATTAATCAATAATAAATAAATAAATAATAAAGAAAAATAAATAAATTAATAAATTTAACATATAAAAGATAAAAATAAAAATAAAAAAAGACATGAATAACTAAAGTCATAAATAAAGTAATTAATAAATTTAAAATATTAAAAATAAATTAATAATTAAAAGTCACACAAAATAATTGATAAATGAAAAAAAGTAAAAATAAAAAATGTCAAAGTCATTTAAAAATCGAGAAGTGAATGATTACGACCCGCGGGGGCAGTTTTGTGGGTTGACTGTGGTCGGCCGCGCGAGTTGACGGTTATGGCTGACGGGCTGATCCCTATTGGTCGACCGCACGGGTTGATGGTTCGGGTCATAACTGCGACCAGTGGGTGATGACCACAAAGTGCACGGGCCGCAAGTAATATAAAACGGTAGGTAATACCGAGTATCGAATCCTCAGGGAATTTGAATTATATCCACTAATTACCAAGAACCATCATGCTAAATTTTATTTAGAATTCCAATTCGAATGATAACTCGAAAATTAAAGAAACCAATAAAAAGAAACATGCAAGTAAAAGGGAATTTTCCTATCAAGGGGGCTTGACCTAGGGTGTTAATTAGCTTATTGGATATGTAGCTCATTTAAATGGATGCATGTAACTACTAAACTTCAATTTCATAAATCTAGAAGTAATTTTAAGTGGATTTCTCTTTCAAGTTCCTCCACATCTCATACTAACATAACTAATTTATGTGTCCATTTCCTTAGTTAATCATAGTATGCCATTAAGCAACTTCATTATCAATTTCTAACAACTCTCTTTCACTCTCGTGTTCCAAGCAATTATTAGGCATGCAATTAGGATCTAATCTAATTTCTCTCTGTCGAGTATCAATTTAGACCAACAATTCAATTAATCAAGGGATTAAAAGCATTAAGAACAGATTGCAAAGATGAAATATGAAGGAATTCATTACAACACATCCAAGTAACTAAGCTACATAATCCAAATAGCTAAATTAACGACCCAAGGTCTCAAGATTTACTCACAAATGAGAATAATTTTAGCCCAACAATCTTGATTCATGGTTCTAACTCAACAATAATATGAAATTACAAAGGAAACAAGAAGAATTAACCGTTGTGTTGCTCCAATGCTCCCATCACGATCACCTCGAGCCTCGAGCCTTGAAATCCCGATCAATTCCACCTTTTTTCTCTCATTCTTTCTCACTTTTTCTCTTTATTGAGCTAGGGGAGAACCCCCCAAGATGGGATGATTTGAACCAAAGGAAGGGGGGCTATTTATAGGCGCATGGGCTGGGCATTTCTTGCTGAACAAGCCAACAGCGTCGCGACGCTGTGACGTCACAGGTTTCTTGGCGCAGAAGTTGGCGCAGCATCGCGACGCCGTCGCGATTCCAGAATGA

mRNA sequence

ATGCTGTCGCTGGAGAAGACGCCGAAAATGCAACAGGAAGGACAGAGACGGATTGAGCGTGAGAGTGAACAACAGAGAGAGAGAGATCGGCTCGAAAAGAATCGCGAGAAGCTTACCCAGATTTGCATCGAATCGTTGTTACGATCTGCTGCTCGCGTCGGCGGTGAATATGGACCAGCTACACGTTTTTGTGAAGAAGAAACTATCCTCAAGACCGGACGTGTGCATCCACAAATTCACGATCATGCCACTCCCTCTTATGGTCGACTTTTTGTACACGGCCGCGACTATCGCGAGCATTACCTCCTCTTGGCGATGGACATGAATCGAGGTGCAATTTACGTATACGATCCCATGCCCGGGTACATCAAGCGGCCCCAAGTAGAGAAGTTTGTGGAGCTACTTCGTCATACGCTGCCGTCGTTACTGCATGCATGCGACGTAATTAGTTTTGAAATGGAAAACAGAGCACAGAATTTTCGTGCAAATCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGATCATTCTGGGGTGTACAGGTTGAATTAGAAGCTCAACTTGAGACTTCTAATGAGTACATGACTGAGATATTGAGACCGAGGCTAGATGGTACCGTGTGCACACAGATTTATACGTTAAAAGGCGCATGGGCTGGGCATTTCTTGCTGAACAAGCCAACAGCGTCGCGACGCTGTGACGTCACAGGTTTCTTGGCGCAGAAGTTGGCGCAGCATCGCGACGCCGTCGCGATTCCAGAATGA

Coding sequence (CDS)

ATGCTGTCGCTGGAGAAGACGCCGAAAATGCAACAGGAAGGACAGAGACGGATTGAGCGTGAGAGTGAACAACAGAGAGAGAGAGATCGGCTCGAAAAGAATCGCGAGAAGCTTACCCAGATTTGCATCGAATCGTTGTTACGATCTGCTGCTCGCGTCGGCGGTGAATATGGACCAGCTACACGTTTTTGTGAAGAAGAAACTATCCTCAAGACCGGACGTGTGCATCCACAAATTCACGATCATGCCACTCCCTCTTATGGTCGACTTTTTGTACACGGCCGCGACTATCGCGAGCATTACCTCCTCTTGGCGATGGACATGAATCGAGGTGCAATTTACGTATACGATCCCATGCCCGGGTACATCAAGCGGCCCCAAGTAGAGAAGTTTGTGGAGCTACTTCGTCATACGCTGCCGTCGTTACTGCATGCATGCGACGTAATTAGTTTTGAAATGGAAAACAGAGCACAGAATTTTCGTGCAAATCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGATCATTCTGGGGTGTACAGGTTGAATTAGAAGCTCAACTTGAGACTTCTAATGAGTACATGACTGAGATATTGAGACCGAGGCTAGATGGTACCGTGTGCACACAGATTTATACGTTAAAAGGCGCATGGGCTGGGCATTTCTTGCTGAACAAGCCAACAGCGTCGCGACGCTGTGACGTCACAGGTTTCTTGGCGCAGAAGTTGGCGCAGCATCGCGACGCCGTCGCGATTCCAGAATGA

Protein sequence

MLSLEKTPKMQQEGQRRIERESEQQRERDRLEKNREKLTQICIESLLRSAARVGGEYGPATRFCEEETILKTGRVHPQIHDHATPSYGRLFVHGRDYREHYLLLAMDMNRGAIYVYDPMPGYIKRPQVEKFVELLRHTLPSLLHACDVISFEMENRAQNFRANQEDLWFSLVFRSFWGVQVELEAQLETSNEYMTEILRPRLDGTVCTQIYTLKGAWAGHFLLNKPTASRRCDVTGFLAQKLAQHRDAVAIPE
Homology
[Close]
BLAST of Spg004916 vs. NCBI nr
Match: XP_038902498.1 (uncharacterized protein LOC120089158 [Benincasa hispida])

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-05
Identity = 23/50 (46.00%), Postives = 38/50 (76.00%), Query Frame = 0 

Query: 99  EHYLLLAMDMNRGAIYVYDPMPGYIKRPQVEKFVELLRHTLPSLLHACDV 149
           +H++L+A D+NRG ++V+D +P    + ++E F+E L +TLPSLLH CD+
Sbjct: 252 QHWMLVAFDLNRGRLFVFDSLPSMTSKKKLESFLESLTYTLPSLLHYCDL 301

[Close]
BLAST of Spg004916 vs. NCBI nr
Match: XP_038875042.1 (uncharacterized protein LOC120067568 [Benincasa hispida])

HSP 1 Score: 59.3 bits (142), Expect = 5.5e-05
Identity = 22/66 (33.33%), Postives = 45/66 (68.18%), Query Frame = 0 

Query: 99  EHYLLLAMDMNRGAIYVYDPMPGYIKRPQVEKFVELLRHTLPSLLHACDVISFEMENRAQ 158
           +H++L+A ++NR  ++V+D +P    + ++E F+E L +TLPSLLH CD+  ++ + +  
Sbjct: 32  QHWMLIAFNLNRDQLFVFDSLPSMTSKKKLESFLEPLTYTLPSLLHYCDLKRWKPDIKTS 91

Query: 159 NFRANQ 165
            ++ +Q
Sbjct: 92  RWKISQ 97

[Close]
BLAST of Spg004916 vs. NCBI nr
Match: XP_038899753.1 (uncharacterized protein LOC120086987 [Benincasa hispida] >XP_038899754.1 uncharacterized protein LOC120086987 [Benincasa hispida])

HSP 1 Score: 58.9 bits (141), Expect = 7.2e-05
Identity = 25/50 (50.00%), Postives = 37/50 (74.00%), Query Frame = 0 

Query: 99  EHYLLLAMDMNRGAIYVYDPMPGYIKRPQVEKFVELLRHTLPSLLHACDV 149
           EH+++LAMD+NRG I+V+D +P Y    ++  ++E L  T+PSLLH CDV
Sbjct: 129 EHWIVLAMDINRGHIFVFDSLPSYTPMTKLVNWLEPLTVTVPSLLHYCDV 178

[Close]
BLAST of Spg004916 vs. NCBI nr
Match: XP_022155371.1 (uncharacterized protein LOC111022515 [Momordica charantia])

HSP 1 Score: 57.0 bits (136), Expect = 2.7e-04
Identity = 22/52 (42.31%), Postives = 38/52 (73.08%), Query Frame = 0 

Query: 98  REHYLLLAMDMNRGAIYVYDPMPGYIKRPQVEKFVELLRHTLPSLLHACDVI 150
           R+H++L+ +DM +  I+VYDP+PG+I   ++   +  L HT+PSLL+AC ++
Sbjct: 28  RDHWVLVXIDMTQSEIFVYDPLPGHISTSKLMTDIRPLSHTIPSLLYACGLM 79

[Close]
BLAST of Spg004916 vs. ExPASy TrEMBL
Match: A0A6J1DRI2 (uncharacterized protein LOC111022515 OS=Momordica charantia OX=3673 GN=LOC111022515 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-04
Identity = 22/52 (42.31%), Postives = 38/52 (73.08%), Query Frame = 0 

Query: 98  REHYLLLAMDMNRGAIYVYDPMPGYIKRPQVEKFVELLRHTLPSLLHACDVI 150
           R+H++L+ +DM +  I+VYDP+PG+I   ++   +  L HT+PSLL+AC ++
Sbjct: 28  RDHWVLVXIDMTQSEIFVYDPLPGHISTSKLMTDIRPLSHTIPSLLYACGLM 79

[Close]
BLAST of Spg004916 vs. ExPASy TrEMBL
Match: A0A6J1DN69 (uncharacterized protein LOC111022140 OS=Momordica charantia OX=3673 GN=LOC111022140 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.6e-04
Identity = 22/52 (42.31%), Postives = 38/52 (73.08%), Query Frame = 0 

Query: 98  REHYLLLAMDMNRGAIYVYDPMPGYIKRPQVEKFVELLRHTLPSLLHACDVI 150
           R+H++L+A+DM +  I+VYD +PG+I   ++   +  L HT+PSLL+AC ++
Sbjct: 28  RDHWVLVAIDMTQSEIFVYDSLPGHISTSKLMIDLRPLSHTIPSLLYACGLM 79

The following BLAST results are available for this feature:
BLAST of Spg004916 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038902498.11.5e-0546.00uncharacterized protein LOC120089158 [Benincasa hispida][more]
XP_038875042.15.5e-0533.33uncharacterized protein LOC120067568 [Benincasa hispida][more]
XP_038899753.17.2e-0550.00uncharacterized protein LOC120086987 [Benincasa hispida] >XP_038899754.1 unchara... [more]
XP_022155371.12.7e-0442.31uncharacterized protein LOC111022515 [Momordica charantia][more]
BLAST of Spg004916 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg004916 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DRI21.3e-0442.31uncharacterized protein LOC111022515 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1DN698.6e-0442.31uncharacterized protein LOC111022140 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
BLAST of Spg004916 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 21..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 10..32

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg004916.1Spg004916.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016787 hydrolase activity