Spg004891 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg004891
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold9: 22567949 .. 22570301 (+)
RNA-Seq ExpressionSpg004891
SyntenySpg004891
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAGATTCTAAAATTTTTTCTTGCAGAAAAAAGGAAATAAAGATGGAGGATTCAACTAAAAGAACCAAGGAGGTTCTTGAAGAAAACGATGATGTTGCTCATCGTCCTTTCTTTTTAACCATCTTCAACTCGCTGTTGAAACTTGTCATGGCCATTTTCAGGCTTCTAGGTCCCTATGCTCATCGTCCGACACCGTCGCCACCGGAAGGTTGCGGCTCATATCCGCCTCCCACAGCGGCTGACCCACCTGTTGATGAATTGGTAAGCCTTGATTTCCCAACACTTGTAGAGGCTAGAAATTTTTCGACAAATTTTGGGTTCGTTTGAAATACATTTTAATTTAAATATTTTTCAAGAATGTATTTTTTTAAAAAAGTTTTGTACAAAAATGTTTAAAATTTAAATACTCAGTATGTTTGGTTGCATTTCCTCATAGGTGTTTTTATACACAAGTTATTGTATACTAAAGACTCTTTTTAAAAAAAACTGGCTTCGAGTGTTTCTCTCAAAATAGTTTATTTATTAATCTCATTTTCTAATAAGTCATTTTTAGTGGTTGTCAAACACTATAATTTTTTTTCAAAATTAAACACTTGAAAAGTTAAACCAAACACACCCTTTATATTTTTTCCATTCTAAAAACTTTATGAGACAAATTAGGAAACAAGATGTCAAGGGAAATTATAATGGTAGCATGATTTATATCAAATATTGCAATATATCACCTAGAAAGATATGCAAACATAACAAAGTGGAAGAGTCCGTTTGGAATACATTTTAATTTAAATGTTTTTCAAGAATGCATTTTTTAAAAAACATTTTGCATAAAACTGTTTAAAATTTAAACACTCATATGTTTGGTTACATTTCCTCATAAATGTTTTTAGACACAAGTTATTGCATATTTAAAACTCTTTTTGAAAAAGTTGGTTACAAGTGTTTCTTTCAAAATGATTTATTTCTCAATCTCATTTTCTAATAAGTCATTTTTAGTGGTTGCCAAACATTAGAAATTTTTTCAAAATGATTTTTTTTCAAAATTAAACACTTGAAAAGTTAAACCAAACACACCCGAAATCTCATTCATTCAATCCATATATAGATTAAGTAGTGATTTTTCAAGATAACAATTAATTAATATATAGGCCAATTAGTGATCAATGATATTCTAAAATTATCATTGATTAGTATATAAGTTAGGCCGGTTTGGAGTACCTTTTCGTTTAAGTGTTTTTCAAGAATGTTTTTTTTAAACAATTTGTACAAAAATTTTTTAGAATTTAAACACTCATATATTTGGTTACATTTCCTTATATGTGTTTGTATGCACAAGTTATTATATATTTAAAAACTCTTTTTTTTTTTTAAACTTTCTTTCAATTATTTATTTCAAAATGGTTTATTTCTCAATCTTATTTTTTACTAAGTTATTTTTAGTGGTGGTTAAACACTAGAATTTTTTCAAAATTAAACCCTTGAAAAATTAAATCAAACACACCCTTAATCGATGTTATACTAAGGTAACATTAAGGTAATATCGAGGATTAATCACTAATTACAACAATTTAAGAGAATATGAATTTCTGAAAGGATAACTTATATGGAATTATTTTTAGGAAATAACACATTAGTAAATACTCTTTTAAAAAGTGCTAAAAATTTTCAAAATTTCAAAATTTTAAGTATTATATACTTTCTGAATTTTACTTACAAGAGGCAGAGCCAAAAGCCTTTATTGGAAGGAACAAAATTCTATATTCTAAATATATATATACACAACATACATACAAATAAATATGAGGGAGGAGGGCAAATTCGAGAGGACTTTAAAATCTATAGCTTTTTGAAAAAATTTTAACATATGACGGGCTCTTTTCTCTTCGCTTTTGGGCAATTGCACTATTCTTTGTTCTTGACTCTGTCCATATCTGACTCTTCTTTCATGTAGTCATAGGTTGAGCAGAGGAAGTTACAATTTAGGTCAAATTATATATTATTATTAAAACGTTGTGTTAAAGGTTGTTTGGATCTGTTTGGTTTTGTAGGGACAGGAAAAAGGTAGACTTAATCCACCTCCGCCGCCGCCTCCAAGCAACGGCGGCGGTCCTCAGACCAACCTATCTCCGTCAGACCCCCAAGATGAACAATGAAATATATATACATATATGTGGAGATGCATAACATAGAAAAGTTCCATCTAAAGTCACTTATTAAGTTGGTTGATTGTTGTAAAATAATTTTCTTCTATGAAAAATTAGCAAACCATTATTTAATTTCTCTCTAGAGTAATTCTCTTTGGAGTGGAGCTTTATGGAAATCAAAATTATAGAAGCTTGATTTGTCTTGTTGTCGC

mRNA sequence

GCAGATTCTAAAATTTTTTCTTGCAGAAAAAAGGAAATAAAGATGGAGGATTCAACTAAAAGAACCAAGGAGGTTCTTGAAGAAAACGATGATGTTGCTCATCGTCCTTTCTTTTTAACCATCTTCAACTCGCTGTTGAAACTTGTCATGGCCATTTTCAGGCTTCTAGGTCCCTATGCTCATCGTCCGACACCGTCGCCACCGGAAGGTTGCGGCTCATATCCGCCTCCCACAGCGGCTGACCCACCTGTTGATGAATTGGGACAGGAAAAAGGTAGACTTAATCCACCTCCGCCGCCGCCTCCAAGCAACGGCGGCGGTCCTCAGACCAACCTATCTCCGTCAGACCCCCAAGATGAACAATGA

Coding sequence (CDS)

GCAGATTCTAAAATTTTTTCTTGCAGAAAAAAGGAAATAAAGATGGAGGATTCAACTAAAAGAACCAAGGAGGTTCTTGAAGAAAACGATGATGTTGCTCATCGTCCTTTCTTTTTAACCATCTTCAACTCGCTGTTGAAACTTGTCATGGCCATTTTCAGGCTTCTAGGTCCCTATGCTCATCGTCCGACACCGTCGCCACCGGAAGGTTGCGGCTCATATCCGCCTCCCACAGCGGCTGACCCACCTGTTGATGAATTGGGACAGGAAAAAGGTAGACTTAATCCACCTCCGCCGCCGCCTCCAAGCAACGGCGGCGGTCCTCAGACCAACCTATCTCCGTCAGACCCCCAAGATGAACAATGA

Protein sequence

ADSKIFSCRKKEIKMEDSTKRTKEVLEENDDVAHRPFFLTIFNSLLKLVMAIFRLLGPYAHRPTPSPPEGCGSYPPPTAADPPVDELGQEKGRLNPPPPPPPSNGGGPQTNLSPSDPQDEQ
Homology
BLAST of Spg004891 vs. NCBI nr
Match: XP_008464347.1 (PREDICTED: uncharacterized protein LOC103502255 [Cucumis melo] >KAA0039202.1 uncharacterized protein E6C27_scaffold121G001200 [Cucumis melo var. makuwa] >TYK18469.1 uncharacterized protein E5676_scaffold607G00390 [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 2.6e-13
Identity = 53/106 (50.00%), Postives = 69/106 (65.09%), Query Frame = 0

Query: 14  KMEDSTKRTKEVLEENDDVAHR--PFFLTIFNSLLKLVMAIFRLLGPYAHRPTPSPPEG- 73
           ++E+S + TKE+   NDDV H   PFFL+IFN + ++ MA +R LG   HRP  S  E  
Sbjct: 13  EIENSNENTKEL---NDDVVHDHCPFFLSIFNLVFQITMAFYRFLGFRVHRPILSSSEDS 72

Query: 74  --CGSYPPPTAADPPVDELGQEK---GRLNPPPPPPPSNGGGPQTN 112
               S PPPT  DPP+++ G+E+    R NPPPPPPPSNGGG +TN
Sbjct: 73  YPVDSQPPPTTVDPPIEDPGEEEREFARRNPPPPPPPSNGGGGRTN 115

BLAST of Spg004891 vs. NCBI nr
Match: XP_031743811.1 (uncharacterized protein LOC116404676 [Cucumis sativus] >KAE8646593.1 hypothetical protein Csa_005180 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 2.7e-10
Identity = 44/104 (42.31%), Postives = 65/104 (62.50%), Query Frame = 0

Query: 14  KMEDSTKRTKEVLEENDDVAHRPFFLTIFNSLLKLVMAIFRLLG---PYAHRPTPSPPEG 73
           K+E+S + TK++ +++D   H PFFL+IF  + ++ MA +R LG   P +  P+      
Sbjct: 13  KIENSNENTKKMNDDDDVHDHCPFFLSIFKLVFQITMAFYRFLGFCVPSSTLPSSEDSYP 72

Query: 74  CGSYPPPTAADPPVDELGQEK---GRLNPPPPPPPSNGGGPQTN 112
              +PPP   DPP++  G+E+    R NPPPPPPPSNGGG +TN
Sbjct: 73  VDPHPPPKTDDPPIENSGEEEREFARRNPPPPPPPSNGGGGRTN 116

BLAST of Spg004891 vs. NCBI nr
Match: XP_038886557.1 (uncharacterized protein LOC120076731 [Benincasa hispida])

HSP 1 Score: 65.1 bits (157), Expect = 4.8e-07
Identity = 48/109 (44.04%), Postives = 65/109 (59.63%), Query Frame = 0

Query: 17  DSTKRTKEVLEENDDV---AHRPFFLTIFNSLLKLVMAIFRLLG------PYAHRPTPSP 76
           DS +++K+ ++++D+    +H P FL I +S+L+  +AI R LG      PY  RP PS 
Sbjct: 2   DSIEKSKKQVDDDDETDLHSHCPIFLIICDSILQAFIAILRFLGFNHNGPPY--RPAPSS 61

Query: 77  PEGC---GSYPPPTAADPPVDELGQEKGRLNP--PPPPPPSNGGGPQTN 112
           PE C   GS PP TA +PP DE  +E     P  PPPPP S GGG QT+
Sbjct: 62  PEDCYTDGSDPPSTAVNPPDDESEEESEYYRPHVPPPPPWSTGGGGQTD 108

BLAST of Spg004891 vs. NCBI nr
Match: KAG6592220.1 (hypothetical protein SDJN03_14566, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.1 bits (144), Expect = 1.5e-05
Identity = 40/80 (50.00%), Postives = 49/80 (61.25%), Query Frame = 0

Query: 36  PFFLTIFNSLLKLVMAIFRLLGPYAHRPTPSPPEG--CGSYPPPTAADPPVDELGQEKGR 95
           PFFL IFN L ++ ++I R LG + +  +          S+P PT  DPPVDE GQE+  
Sbjct: 8   PFFLLIFNFLFQITISISRFLGFHVNTISALSENTHLDASHPSPTDVDPPVDESGQEETA 67

Query: 96  L--NPPPPPPPSNGGGPQTN 112
           L    PPPPPPSNGGG QTN
Sbjct: 68  LAKRTPPPPPPSNGGGGQTN 87

BLAST of Spg004891 vs. NCBI nr
Match: XP_008464348.1 (PREDICTED: uncharacterized protein LOC103502256 [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 2.6e-05
Identity = 47/110 (42.73%), Postives = 60/110 (54.55%), Query Frame = 0

Query: 14  KMEDSTKRTKEVLEENDD---VAHRPFFLTIFNSLLKLVMAIFRLLG------PYAHRPT 73
           KM+DST+++K+  +   D   + H    LTIF+S+L+  +AI R  G      PY  RP 
Sbjct: 39  KMKDSTEKSKKQADNESDLHPIPHCSIILTIFDSILQAFIAILRFFGFKRNAPPY--RPA 98

Query: 74  PSPPEGC---GSYPPPTAADPPVDELGQEKGRLNP--PPPPPPSNGGGPQ 110
            S  E C   GS PP TA DPP D+  +E     P  PPPPP S GGG Q
Sbjct: 99  SSSLEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPPPPWSTGGGGQ 146

BLAST of Spg004891 vs. ExPASy TrEMBL
Match: A0A5A7T6U0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold607G00390 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.3e-13
Identity = 53/106 (50.00%), Postives = 69/106 (65.09%), Query Frame = 0

Query: 14  KMEDSTKRTKEVLEENDDVAHR--PFFLTIFNSLLKLVMAIFRLLGPYAHRPTPSPPEG- 73
           ++E+S + TKE+   NDDV H   PFFL+IFN + ++ MA +R LG   HRP  S  E  
Sbjct: 13  EIENSNENTKEL---NDDVVHDHCPFFLSIFNLVFQITMAFYRFLGFRVHRPILSSSEDS 72

Query: 74  --CGSYPPPTAADPPVDELGQEK---GRLNPPPPPPPSNGGGPQTN 112
               S PPPT  DPP+++ G+E+    R NPPPPPPPSNGGG +TN
Sbjct: 73  YPVDSQPPPTTVDPPIEDPGEEEREFARRNPPPPPPPSNGGGGRTN 115

BLAST of Spg004891 vs. ExPASy TrEMBL
Match: A0A1S3CMT1 (uncharacterized protein LOC103502255 OS=Cucumis melo OX=3656 GN=LOC103502255 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.3e-13
Identity = 53/106 (50.00%), Postives = 69/106 (65.09%), Query Frame = 0

Query: 14  KMEDSTKRTKEVLEENDDVAHR--PFFLTIFNSLLKLVMAIFRLLGPYAHRPTPSPPEG- 73
           ++E+S + TKE+   NDDV H   PFFL+IFN + ++ MA +R LG   HRP  S  E  
Sbjct: 13  EIENSNENTKEL---NDDVVHDHCPFFLSIFNLVFQITMAFYRFLGFRVHRPILSSSEDS 72

Query: 74  --CGSYPPPTAADPPVDELGQEK---GRLNPPPPPPPSNGGGPQTN 112
               S PPPT  DPP+++ G+E+    R NPPPPPPPSNGGG +TN
Sbjct: 73  YPVDSQPPPTTVDPPIEDPGEEEREFARRNPPPPPPPSNGGGGRTN 115

BLAST of Spg004891 vs. ExPASy TrEMBL
Match: A0A0A0K8Z6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020170 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.1e-08
Identity = 41/93 (44.09%), Postives = 57/93 (61.29%), Query Frame = 0

Query: 26  LEENDDV-AHRPFFLTIFNSLLKLVMAIFRLLG---PYAHRPTPSPPEGCGSYPPPTAAD 85
           + ++DDV  H PFFL+IF  + ++ MA +R LG   P +  P+         +PPP   D
Sbjct: 1   MNDDDDVHDHCPFFLSIFKLVFQITMAFYRFLGFCVPSSTLPSSEDSYPVDPHPPPKTDD 60

Query: 86  PPVDELGQEK---GRLNPPPPPPPSNGGGPQTN 112
           PP++  G+E+    R NPPPPPPPSNGGG +TN
Sbjct: 61  PPIENSGEEEREFARRNPPPPPPPSNGGGGRTN 93

BLAST of Spg004891 vs. ExPASy TrEMBL
Match: A0A1S3CLD8 (uncharacterized protein LOC103502256 OS=Cucumis melo OX=3656 GN=LOC103502256 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.3e-05
Identity = 47/110 (42.73%), Postives = 60/110 (54.55%), Query Frame = 0

Query: 14  KMEDSTKRTKEVLEENDD---VAHRPFFLTIFNSLLKLVMAIFRLLG------PYAHRPT 73
           KM+DST+++K+  +   D   + H    LTIF+S+L+  +AI R  G      PY  RP 
Sbjct: 39  KMKDSTEKSKKQADNESDLHPIPHCSIILTIFDSILQAFIAILRFFGFKRNAPPY--RPA 98

Query: 74  PSPPEGC---GSYPPPTAADPPVDELGQEKGRLNP--PPPPPPSNGGGPQ 110
            S  E C   GS PP TA DPP D+  +E     P  PPPPP S GGG Q
Sbjct: 99  SSSLEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPPPPWSTGGGGQ 146

BLAST of Spg004891 vs. ExPASy TrEMBL
Match: A0A5D3D4J4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold607G00380 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.9e-05
Identity = 46/109 (42.20%), Postives = 59/109 (54.13%), Query Frame = 0

Query: 15  MEDSTKRTKEVLEENDD---VAHRPFFLTIFNSLLKLVMAIFRLLG------PYAHRPTP 74
           M+DST+++K+  +   D   + H    LTIF+S+L+  +AI R  G      PY  RP  
Sbjct: 1   MKDSTEKSKKQADNESDLHPIPHCSIILTIFDSILQAFIAILRFFGFKRNAPPY--RPAS 60

Query: 75  SPPEGC---GSYPPPTAADPPVDELGQEKGRLNP--PPPPPPSNGGGPQ 110
           S  E C   GS PP TA DPP D+  +E     P  PPPPP S GGG Q
Sbjct: 61  SSLEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPPPPWSTGGGGQ 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008464347.12.6e-1350.00PREDICTED: uncharacterized protein LOC103502255 [Cucumis melo] >KAA0039202.1 unc... [more]
XP_031743811.12.7e-1042.31uncharacterized protein LOC116404676 [Cucumis sativus] >KAE8646593.1 hypothetica... [more]
XP_038886557.14.8e-0744.04uncharacterized protein LOC120076731 [Benincasa hispida][more]
KAG6592220.11.5e-0550.00hypothetical protein SDJN03_14566, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_008464348.12.6e-0542.73PREDICTED: uncharacterized protein LOC103502256 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T6U01.3e-1350.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CMT11.3e-1350.00uncharacterized protein LOC103502255 OS=Cucumis melo OX=3656 GN=LOC103502255 PE=... [more]
A0A0A0K8Z62.1e-0844.09Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020170 PE=4 SV=1[more]
A0A1S3CLD81.3e-0542.73uncharacterized protein LOC103502256 OS=Cucumis melo OX=3656 GN=LOC103502256 PE=... [more]
A0A5D3D4J44.9e-0542.20Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..82
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..107
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..121

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg004891.1Spg004891.1mRNA