Spg004882 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg004882
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Protein of unknown function (DUF3511)
Location	scaffold9: 19914864 .. 19915127 (-)
RNA-Seq Expression	Spg004882
Synteny	Spg004882

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGAGCAAATCATTCCCCAAGTACTCATCCTCGACTTCGGGCGAGTTCGGTTTCCAAACCCGATCCAACTCGTACAATTTCAATGGCCCGACTGGGAAGGGGAGTGGGTTCTCGTCCTCGGCCGATCCCGAGCTCCAACGGAAGAGAAGGATTGCCTCTTATAATGTTTTCAACATGGAAAACAAGGTCAAGTCCAGTGTAAAGAACAGCTTCAAGTGGATCAAAACCAAGTTTAGTGACATTCGCTATGGTTTGTGA

mRNA sequence

ATGGAGAAGAGCAAATCATTCCCCAAGTACTCATCCTCGACTTCGGGCGAGTTCGGTTTCCAAACCCGATCCAACTCGTACAATTTCAATGGCCCGACTGGGAAGGGGAGTGGGTTCTCGTCCTCGGCCGATCCCGAGCTCCAACGGAAGAGAAGGATTGCCTCTTATAATGTTTTCAACATGGAAAACAAGGTCAAGTCCAGTGTAAAGAACAGCTTCAAGTGGATCAAAACCAAGTTTAGTGACATTCGCTATGGTTTGTGA

Coding sequence (CDS)

ATGGAGAAGAGCAAATCATTCCCCAAGTACTCATCCTCGACTTCGGGCGAGTTCGGTTTCCAAACCCGATCCAACTCGTACAATTTCAATGGCCCGACTGGGAAGGGGAGTGGGTTCTCGTCCTCGGCCGATCCCGAGCTCCAACGGAAGAGAAGGATTGCCTCTTATAATGTTTTCAACATGGAAAACAAGGTCAAGTCCAGTGTAAAGAACAGCTTCAAGTGGATCAAAACCAAGTTTAGTGACATTCGCTATGGTTTGTGA

Protein sequence

MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTGKGSGFSSSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL

Homology

[Close]

BLAST of Spg004882 vs. NCBI nr
Match: KAA0039168.1 (Mediator of RNA polymerase II transcription subunit 8 [Cucumis melo var. makuwa])

HSP 1 Score: 166.0 bits (419), Expect = 1.4e-37
Identity = 84/87 (96.55%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTGKGSGFSSSADPELQRKRRIASYNVFN 60
          MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTGK +GFS+SADPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTGKATGFSTSADPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSDIRYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]

BLAST of Spg004882 vs. NCBI nr
Match: KGN45893.1 (hypothetical protein Csa_005289 [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 7.1e-37
Identity = 83/87 (95.40%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTGKGSGFSSSADPELQRKRRIASYNVFN 60
          MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPT K +GFS+SADPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSDIRYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]

BLAST of Spg004882 vs. NCBI nr
Match: XP_023536368.1 (uncharacterized protein LOC111797558 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 159.8 bits (403), Expect = 1.0e-35
Identity = 81/87 (93.10%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTGKGSGFSSSADPELQRKRRIASYNVFN 60
          MEKSKSFPKYSSS SGEF FQTRSNSYNFNGPTGK +GFS+S DPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSCSGEFSFQTRSNSYNFNGPTGKATGFSTSTDPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSDIRYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]

BLAST of Spg004882 vs. NCBI nr
Match: XP_022930185.1 (uncharacterized protein LOC111436683 [Cucurbita moschata] >KAG6592294.1 hypothetical protein SDJN03_14640, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025131.1 hypothetical protein SDJN02_13954, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 156.8 bits (395), Expect = 8.7e-35
Identity = 80/87 (91.95%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTGKGSGFSSSADPELQRKRRIASYNVFN 60
          MEKSKSFPKYSSS SGEF FQTRSNSYNFNGPT K +GFS+S DPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSCSGEFSFQTRSNSYNFNGPTTKATGFSTSTDPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSDIRYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]

BLAST of Spg004882 vs. NCBI nr
Match: KAG6607585.1 (hypothetical protein SDJN03_00927, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 156.0 bits (393), Expect = 1.5e-34
Identity = 80/87 (91.95%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTGKGSGFSSSADPELQRKRRIASYNVFN 60
          MEKSK+FPKYSSSTSGEFGF+T+SNSYNFNG   KGSGFSSSADPELQRKRRIASYNVFN
Sbjct: 1  MEKSKTFPKYSSSTSGEFGFETQSNSYNFNGSAEKGSGFSSSADPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSD RYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDRRYGL 87

[Close]

BLAST of Spg004882 vs. ExPASy TrEMBL
Match: A0A5A7T8F8 (Mediator of RNA polymerase II transcription subunit 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold121G00710 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.0e-38
Identity = 84/87 (96.55%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTGKGSGFSSSADPELQRKRRIASYNVFN 60
          MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTGK +GFS+SADPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTGKATGFSTSADPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSDIRYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]

BLAST of Spg004882 vs. ExPASy TrEMBL
Match: A0A0A0K8Y3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G017090 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.5e-37
Identity = 83/87 (95.40%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTGKGSGFSSSADPELQRKRRIASYNVFN 60
          MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPT K +GFS+SADPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSDIRYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]

BLAST of Spg004882 vs. ExPASy TrEMBL
Match: A0A6J1EWA0 (uncharacterized protein LOC111436683 OS=Cucurbita moschata OX=3662 GN=LOC111436683 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.2e-35
Identity = 80/87 (91.95%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTGKGSGFSSSADPELQRKRRIASYNVFN 60
          MEKSKSFPKYSSS SGEF FQTRSNSYNFNGPT K +GFS+S DPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSCSGEFSFQTRSNSYNFNGPTTKATGFSTSTDPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSDIRYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]

BLAST of Spg004882 vs. ExPASy TrEMBL
Match: A0A6J1ICY9 (uncharacterized protein LOC111472683 OS=Cucurbita maxima OX=3661 GN=LOC111472683 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.1e-34
Identity = 79/87 (90.80%), Postives = 81/87 (93.10%), Query Frame = 0


Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTGKGSGFSSSADPELQRKRRIASYNVFN 60
          MEKSKSFPKYSSS SGEF FQTRSNSYNFNGPTG  +GFS+S DPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSCSGEFTFQTRSNSYNFNGPTGTATGFSTSTDPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSDIRY L
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYSL 87

[Close]

BLAST of Spg004882 vs. ExPASy TrEMBL
Match: A0A2P5BV48 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_207620 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.1e-30
Identity = 70/87 (80.46%), Postives = 80/87 (91.95%), Query Frame = 0


Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTGKGSGFSSSADPELQRKRRIASYNVFN 60
          MEKS+SFP+YSS+ SGEFGF+ RSNSYNFNGP  KGSGF +S+DPELQRK+RIASYNVF 
Sbjct: 1  MEKSRSFPEYSSAYSGEFGFRERSNSYNFNGPCQKGSGFVTSSDPELQRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          ME KVKSSV+NSFKWIK+KFSDIRYG+
Sbjct: 61 MEGKVKSSVRNSFKWIKSKFSDIRYGV 87

[Close]

BLAST of Spg004882 vs. TAIR 10
Match: AT4G09890.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 85.9 bits (211), Expect = 1.8e-17
Identity = 51/93 (54.84%), Postives = 67/93 (72.04%), Query Frame = 0


Query: 1  MEKSKSFPKYSSS-TSGEFGF-QTRSNSYNFNGPTGKGSGFSSSADPELQRKRRIASYNV 60
          M+ SKS+ +YSSS ++ EFG+ Q RSNSYNFNGP         + DPE++RK+R+ASYN+
Sbjct: 2  MKGSKSYTEYSSSFSTDEFGYDQNRSNSYNFNGP-------CINTDPEMKRKKRVASYNL 61

Query: 61 FNMENKVKSSVKNSFKWIKTKFS----DIRYGL 88
          F  E K+KS++KNSFKWIK KFS     IRY +
Sbjct: 62 FATEEKLKSTLKNSFKWIKNKFSGDDNSIRYNV 87

[Close]

BLAST of Spg004882 vs. TAIR 10
Match: AT5G11970.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 59.3 bits (142), Expect = 1.8e-09
Identity = 23/43 (53.49%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 44  DPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYG 87
           DPELQRK+R+ASY ++ +E KVK S +NSF+W+K +++ + YG
Sbjct: 61  DPELQRKKRVASYKMYGVEGKVKGSFRNSFRWLKQRYTQVVYG 103

[Close]

BLAST of Spg004882 vs. TAIR 10
Match: AT1G72720.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 54.7 bits (130), Expect = 4.4e-08
Identity = 39/100 (39.00%), Postives = 53/100 (53.00%), Query Frame = 0


Query: 2   EKSKSFP----------KYSSSTSGEFGFQT----RSNSYNFNGPTGKGSGFSSSADPEL 61
           EKS+S P           YS+ST   +   T     SN+ +      K  GF    + E+
Sbjct: 27  EKSESEPTNQQPPVMMRSYSTSTYNAYQNPTIVRDDSNNKSKRSNKVKKKGFKGLCEAEI 86

Query: 62  QRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL 88
           QRK+R+ASYNV+ +E +VK S+K SFKW K   S+  YGL
Sbjct: 87  QRKKRVASYNVYGVEGRVKGSMKKSFKWFKETCSNAVYGL 126

[Close]

BLAST of Spg004882 vs. TAIR 10
Match: AT3G05725.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 50.1 bits (118), Expect = 1.1e-06
Identity = 20/44 (45.45%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 44  DPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL 88
           DPE++RKRR+A Y +++ E K+K +++ S+KWIK + S I +G+
Sbjct: 81  DPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQCSKIIHGI 124

[Close]

BLAST of Spg004882 vs. TAIR 10
Match: AT2G19460.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 49.7 bits (117), Expect = 1.4e-06
Identity = 25/49 (51.02%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 35  KGSGFSSSA----DPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTK 80
           KG   SSS+    DP+LQRK+R+ SY  + +E K+K S + SFKWIK K
Sbjct: 62  KGRSSSSSSWGFVDPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDK 110

The following BLAST results are available for this feature:

BLAST of Spg004882 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039168.1	1.4e-37	96.55	Mediator of RNA polymerase II transcription subunit 8 [Cucumis melo var. makuwa]	[more]
KGN45893.1	7.1e-37	95.40	hypothetical protein Csa_005289 [Cucumis sativus]	[more]
XP_023536368.1	1.0e-35	93.10	uncharacterized protein LOC111797558 [Cucurbita pepo subsp. pepo]	[more]
XP_022930185.1	8.7e-35	91.95	uncharacterized protein LOC111436683 [Cucurbita moschata] >KAG6592294.1 hypothet...	[more]
KAG6607585.1	1.5e-34	91.95	hypothetical protein SDJN03_00927, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Spg004882 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg004882 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T8F8	7.0e-38	96.55	Mediator of RNA polymerase II transcription subunit 8 OS=Cucumis melo var. makuw...	[more]
A0A0A0K8Y3	3.5e-37	95.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G017090 PE=4 SV=1	[more]
A0A6J1EWA0	4.2e-35	91.95	uncharacterized protein LOC111436683 OS=Cucurbita moschata OX=3662 GN=LOC1114366...	[more]
A0A6J1ICY9	2.1e-34	90.80	uncharacterized protein LOC111472683 OS=Cucurbita maxima OX=3661 GN=LOC111472683...	[more]
A0A2P5BV48	3.1e-30	80.46	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_207620 PE...	[more]

BLAST of Spg004882 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09890.1	1.8e-17	54.84	Protein of unknown function (DUF3511)	[more]
AT5G11970.1	1.8e-09	53.49	Protein of unknown function (DUF3511)	[more]
AT1G72720.1	4.4e-08	39.00	Protein of unknown function (DUF3511)	[more]
AT3G05725.1	1.1e-06	45.45	Protein of unknown function (DUF3511)	[more]
AT2G19460.1	1.4e-06	51.02	Protein of unknown function (DUF3511)	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 43..86 e-value: 4.4E-24 score: 84.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..47
None	No IPR available	PANTHER	PTHR33193	DOMAIN PROTEIN, PUTATIVE (DUF3511)-RELATED	coord: 1..82
None	No IPR available	PANTHER	PTHR33193:SF7	OS06G0686600 PROTEIN	coord: 1..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg004882.1	Spg004882.1	mRNA