Spg004816 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg004816
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	60S ribosomal protein L34
Location	scaffold5: 20632706 .. 20633981 (+)
RNA-Seq Expression	Spg004816
Synteny	Spg004816

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTTACATTACTTGTGCAACAGCTTTTGAGGGTTTCGACGAGCGGAGAAGATGGTCCAGCGGCTCACTTACCGTAAGCGGCATAGCTATGCCACCAAGTCCAACCAGCATCGCGTCGTCAAAACCCCCGGTAATCAGACATTGTTCTTCTTTCATGCCTTGAAGCCTTCTCTGAATCACATCTACCATCATTCGTTGATTTGATGAATTTCTAGTACGCTTCTGCATCTATTTGCAACATCTGGTCTCGCTTGCTTAATCGATGATGTGTTTTTTGATTCTTAGGTGGAAAGCTTGTGTACCAGACCACGAAGAAGAGGGCCAGTGGTCCGAAGTGCCCTGTTACTGGAAAGAGAATTCAAGGAGTGCGTATGATTTTATGCTTGTTCGTTTTGTTTTCATCAAACAAGTTGCTTCAATGCTGTAGAATTAGATTTTGACAACTTTTTTGGTTTCGTTTTTGAGTATTGGGTAATTTTTGGGGGTAAATTTTGCTAGTTGTGGCTGGTTGGTTTGTCCCTGATTTCTCCATACGTAACGAGTCGCTAATCTGTTGGCTTGCAGGCAGGCCATTGTTTTTGTTGTTTTAGCATTTCCTTTATTTTCTCAAACTCACGGTGTTCATTTTGATCAAATTGTGTTGAATTTTACAACTGGTAAGAGTATAGAGTTCCTTACAATATTTCAATCTGGTTGAATTTTGGTTTCTTTTAACAGATTCCTCACTTGAGGCCTGCTGAATACAAGAGGTCTAGACTGGCTAGGAACCGTAGGACTGTAAACCGTGCCTATGGTGGTGTACTGTCTGGAGGTGCTGTTAGGGAGAGGTGTGTTTCTATGATTTACATTGCTATTACATTATGTTGTAAACGATTGCTTGAGCATTACTAAATAACATTTTTGCTGTTGTAGGATTATAAGAGCTTTTTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTTTTGAAGATCCAGAAGGCTAAGGAAAAACTTGCCTCCAAGAGCTAGAATGAACGGTTTAGAAGCACGAACCTTTTTCCATTTTATGTATGCTGTGTGAAAATTTTGACTGGGATCAATGACTTATTAATTTAGATGAGTTTGGAATTAGCTTTGTTTTCTTTCAGTTGCATTAGTCGTTTAAGTTTCTTCTATACAAGAATTATTCAGTTCATCTTTCTTGTTTATGCTTGATTTTGCTTTTTTCATCCCCATCCTTTAGCATGTCCTTCTCCGTTAGACAAAAAAAGAGAGATTTTCCTCGGGGCCCAGCTCCCA

mRNA sequence

ATGGTCCAGCGGCTCACTTACCGTAAGCGGCATAGCTATGCCACCAAGTCCAACCAGCATCGCGTCGTCAAAACCCCCGGTGGAAAGCTTGTGTACCAGACCACGAAGAAGAGGGCCAGTGGTCCGAAGTGCCCTGTTACTGGAAAGAGAATTCAAGGAGTGCGTATGATTTTATGCTTGTTCATTCCTCACTTGAGGCCTGCTGAATACAAGAGGTCTAGACTGGCTAGGAACCGTAGGACTGTAAACCGTGCCTATGGTGGTGTACTGTCTGGAGGTGCTGTTAGGGAGAGGATTATAAGAGCTTTTTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTTTTGAAGATCCAGAAGGCTAAGGAAAAACTTGCCTCCAAGAGCTAG

Coding sequence (CDS)

ATGGTCCAGCGGCTCACTTACCGTAAGCGGCATAGCTATGCCACCAAGTCCAACCAGCATCGCGTCGTCAAAACCCCCGGTGGAAAGCTTGTGTACCAGACCACGAAGAAGAGGGCCAGTGGTCCGAAGTGCCCTGTTACTGGAAAGAGAATTCAAGGAGTGCGTATGATTTTATGCTTGTTCATTCCTCACTTGAGGCCTGCTGAATACAAGAGGTCTAGACTGGCTAGGAACCGTAGGACTGTAAACCGTGCCTATGGTGGTGTACTGTCTGGAGGTGCTGTTAGGGAGAGGATTATAAGAGCTTTTTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTTTTGAAGATCCAGAAGGCTAAGGAAAAACTTGCCTCCAAGAGCTAG

Protein sequence

MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGVRMILCLFIPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS

Homology

[Close]

BLAST of Spg004816 vs. NCBI nr
Match: XP_004138175.3 (60S ribosomal protein L34 [Cucumis sativus] >XP_022152880.1 60S ribosomal protein L34 [Momordica charantia] >XP_022922091.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022933946.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022933947.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022964734.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022964735.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022969674.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_022970352.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_022973066.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_022973072.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_023515397.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023519212.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023520847.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023529309.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023529311.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_038878407.1 60S ribosomal protein L34-like [Benincasa hispida] >KAG6586008.1 60S ribosomal protein L34, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019300.1 60S ribosomal protein L34 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6587535.1 60S ribosomal protein L34, partial [Cucurbita argyrosperma subsp. sororia] >KAG6589504.1 60S ribosomal protein L34, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021512.1 60S ribosomal protein L34 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 221.9 bits (564), Expect = 3.3e-54
Identity = 120/128 (93.75%), Postives = 120/128 (93.75%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGVRMILCL 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQG       
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQG------- 60

Query: 61  FIPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKA 120
            IPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKA
Sbjct: 61  -IPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKA 120

Query: 121 KEKLASKS 129
           KEKLASKS
Sbjct: 121 KEKLASKS 120

[Close]

BLAST of Spg004816 vs. NCBI nr
Match: KAG6583599.1 (Crooked neck-like protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 221.9 bits (564), Expect = 3.3e-54
Identity = 120/128 (93.75%), Postives = 120/128 (93.75%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGVRMILCL 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQG       
Sbjct: 745 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQG------- 804

Query: 61  FIPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKA 120
            IPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKA
Sbjct: 805 -IPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKA 864

Query: 121 KEKLASKS 129
           KEKLASKS
Sbjct: 865 KEKLASKS 864

[Close]

BLAST of Spg004816 vs. NCBI nr
Match: GAY36642.1 (hypothetical protein CUMW_023530 [Citrus unshiu])

HSP 1 Score: 220.7 bits (561), Expect = 7.2e-54
Identity = 118/130 (90.77%), Postives = 121/130 (93.08%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGV--RMIL 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQ+TKKRASGPKCPVTGKRIQG   R+ L
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGKYDRLFL 60

Query: 61  CLFIPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQ 120
           C  IPHLRPAEYKRSRL RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLKIQ
Sbjct: 61  CAQIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAFLVEEQKIVKKVLKIQ 120

Query: 121 KAKEKLASKS 129
           KAKEK A+KS
Sbjct: 121 KAKEKQAAKS 130

[Close]

BLAST of Spg004816 vs. NCBI nr
Match: XP_010044743.1 (60S ribosomal protein L34 [Eucalyptus grandis] >XP_030441919.1 60S ribosomal protein L34 [Syzygium oleosum] >XP_030449442.1 60S ribosomal protein L34 [Syzygium oleosum] >XP_030449623.1 60S ribosomal protein L34 [Syzygium oleosum] >XP_030550747.1 60S ribosomal protein L34 [Rhodamnia argentea] >XP_030550759.1 60S ribosomal protein L34 [Rhodamnia argentea] >KAF7851679.1 hypothetical protein BT93_L3193 [Corymbia citriodora subsp. variegata] >KAF7851688.1 hypothetical protein BT93_L3202 [Corymbia citriodora subsp. variegata] >KAF8021475.1 hypothetical protein BT93_G1807 [Corymbia citriodora subsp. variegata] >KCW86845.1 hypothetical protein EUGRSUZ_B03442 [Eucalyptus grandis])

HSP 1 Score: 220.7 bits (561), Expect = 7.2e-54
Identity = 119/128 (92.97%), Postives = 120/128 (93.75%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGVRMILCL 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQG       
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQG------- 60

Query: 61  FIPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKA 120
            IPHLRPAEYKRSRL+RNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKA
Sbjct: 61  -IPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKA 120

Query: 121 KEKLASKS 129
           KEKLASKS
Sbjct: 121 KEKLASKS 120

[Close]

BLAST of Spg004816 vs. NCBI nr
Match: XP_038893923.1 (60S ribosomal protein L34-like [Benincasa hispida])

HSP 1 Score: 220.7 bits (561), Expect = 7.2e-54
Identity = 119/128 (92.97%), Postives = 120/128 (93.75%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGVRMILCL 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQG       
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQG------- 60

Query: 61  FIPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKA 120
            IPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKA
Sbjct: 61  -IPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKA 120

Query: 121 KEKLASKS 129
           KEKLA+KS
Sbjct: 121 KEKLAAKS 120

[Close]

BLAST of Spg004816 vs. ExPASy Swiss-Prot
Match: P41098 (60S ribosomal protein L34 OS=Nicotiana tabacum OX=4097 GN=RPL34 PE=2 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.2e-54
Identity = 114/128 (89.06%), Postives = 118/128 (92.19%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGVRMILCL 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKL+YQ+TKKRASGPKCPVTGKRIQG       
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQSTKKRASGPKCPVTGKRIQG------- 60

Query: 61  FIPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKA 120
            IPHLRP EYKRSRL+RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLKIQKA
Sbjct: 61  -IPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKA 120

Query: 121 KEKLASKS 129
           KEKLA+KS
Sbjct: 121 KEKLAAKS 120

[Close]

BLAST of Spg004816 vs. ExPASy Swiss-Prot
Match: P40590 (60S ribosomal protein L34 OS=Pisum sativum OX=3888 GN=RPL34 PE=2 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 4.4e-54
Identity = 113/128 (88.28%), Postives = 117/128 (91.41%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGVRMILCL 60
           MVQRLTYR+RHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQG       
Sbjct: 1   MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQG------- 60

Query: 61  FIPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKA 120
            IPHLRP EYKRSRL+RNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQK 
Sbjct: 61  -IPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKT 120

Query: 121 KEKLASKS 129
           KEK A+K+
Sbjct: 121 KEKQAAKN 120

[Close]

BLAST of Spg004816 vs. ExPASy Swiss-Prot
Match: Q42351 (60S ribosomal protein L34-1 OS=Arabidopsis thaliana OX=3702 GN=RPL34A PE=2 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 6.4e-53
Identity = 110/128 (85.94%), Postives = 116/128 (90.62%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGVRMILCL 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKLVYQTTKKRASGPKCPVTGKRIQG       
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQG------- 60

Query: 61  FIPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKA 120
            IPHLRP+EYKRSRL+RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLK+QKA
Sbjct: 61  -IPHLRPSEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKA 120

Query: 121 KEKLASKS 129
           KEK+A K+
Sbjct: 121 KEKVAPKA 120

[Close]

BLAST of Spg004816 vs. ExPASy Swiss-Prot
Match: Q9FE65 (60S ribosomal protein L34-2 OS=Arabidopsis thaliana OX=3702 GN=RPL34B PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 3.2e-52
Identity = 109/127 (85.83%), Postives = 113/127 (88.98%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGVRMILCL 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTTKKRASGPKCPVTGKRIQG       
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQG------- 60

Query: 61  FIPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKA 120
            IPHLRP EYKRSRL+RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLK+QKA
Sbjct: 61  -IPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKA 119

Query: 121 KEKLASK 128
           KEK+A K
Sbjct: 121 KEKVAPK 119

[Close]

BLAST of Spg004816 vs. ExPASy Swiss-Prot
Match: Q9LJW6 (60S ribosomal protein L34-3 OS=Arabidopsis thaliana OX=3702 GN=RPL34C PE=2 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.2e-51
Identity = 109/128 (85.16%), Postives = 112/128 (87.50%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGVRMILCL 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTT KRASGPKCPVTGKRIQG       
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQG------- 60

Query: 61  FIPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKA 120
            IPHLRPAEYKRSRLARN RTVNRAYGGVLSG AVRERI+RAFLVEEQKIVKKVLK+QKA
Sbjct: 61  -IPHLRPAEYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKA 120

Query: 121 KEKLASKS 129
           KEK A KS
Sbjct: 121 KEKTAPKS 120

[Close]

BLAST of Spg004816 vs. ExPASy TrEMBL
Match: A0A6J1I6I6 (60S ribosomal protein L34-like OS=Cucurbita maxima OX=3661 GN=LOC111471563 PE=3 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.6e-54
Identity = 120/128 (93.75%), Postives = 120/128 (93.75%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGVRMILCL 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQG       
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQG------- 60

Query: 61  FIPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKA 120
            IPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKA
Sbjct: 61  -IPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKA 120

Query: 121 KEKLASKS 129
           KEKLASKS
Sbjct: 121 KEKLASKS 120

[Close]

BLAST of Spg004816 vs. ExPASy TrEMBL
Match: A0A6J1HLN7 (60S ribosomal protein L34-like OS=Cucurbita moschata OX=3662 GN=LOC111464723 PE=3 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.6e-54
Identity = 120/128 (93.75%), Postives = 120/128 (93.75%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGVRMILCL 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQG       
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQG------- 60

Query: 61  FIPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKA 120
            IPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKA
Sbjct: 61  -IPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKA 120

Query: 121 KEKLASKS 129
           KEKLASKS
Sbjct: 121 KEKLASKS 120

[Close]

BLAST of Spg004816 vs. ExPASy TrEMBL
Match: A0A6J1DF78 (60S ribosomal protein L34 OS=Momordica charantia OX=3673 GN=LOC111020506 PE=3 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.6e-54
Identity = 120/128 (93.75%), Postives = 120/128 (93.75%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGVRMILCL 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQG       
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQG------- 60

Query: 61  FIPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKA 120
            IPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKA
Sbjct: 61  -IPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKA 120

Query: 121 KEKLASKS 129
           KEKLASKS
Sbjct: 121 KEKLASKS 120

[Close]

BLAST of Spg004816 vs. ExPASy TrEMBL
Match: A0A6J1JDI0 (60S ribosomal protein L34-like OS=Cucurbita maxima OX=3661 GN=LOC111484827 PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 3.5e-54
Identity = 119/128 (92.97%), Postives = 120/128 (93.75%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGVRMILCL 60
           MVQRLTYRKRHSYAT+SNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQG       
Sbjct: 1   MVQRLTYRKRHSYATRSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQG------- 60

Query: 61  FIPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKA 120
            IPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKA
Sbjct: 61  -IPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKA 120

Query: 121 KEKLASKS 129
           KEKLASKS
Sbjct: 121 KEKLASKS 120

[Close]

BLAST of Spg004816 vs. ExPASy TrEMBL
Match: A0A059D9F6 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03442 PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 3.5e-54
Identity = 119/128 (92.97%), Postives = 120/128 (93.75%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGVRMILCL 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQG       
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQG------- 60

Query: 61  FIPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKA 120
            IPHLRPAEYKRSRL+RNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKA
Sbjct: 61  -IPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKA 120

Query: 121 KEKLASKS 129
           KEKLASKS
Sbjct: 121 KEKLASKS 120

[Close]

BLAST of Spg004816 vs. TAIR 10
Match: AT1G26880.1 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 208.0 bits (528), Expect = 4.5e-54
Identity = 110/128 (85.94%), Postives = 116/128 (90.62%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGVRMILCL 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKLVYQTTKKRASGPKCPVTGKRIQG       
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQG------- 60

Query: 61  FIPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKA 120
            IPHLRP+EYKRSRL+RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLK+QKA
Sbjct: 61  -IPHLRPSEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKA 120

Query: 121 KEKLASKS 129
           KEK+A K+
Sbjct: 121 KEKVAPKA 120

[Close]

BLAST of Spg004816 vs. TAIR 10
Match: AT1G69620.1 (ribosomal protein L34 )

HSP 1 Score: 205.7 bits (522), Expect = 2.2e-53
Identity = 109/127 (85.83%), Postives = 113/127 (88.98%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGVRMILCL 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTTKKRASGPKCPVTGKRIQG       
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQG------- 60

Query: 61  FIPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKA 120
            IPHLRP EYKRSRL+RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLK+QKA
Sbjct: 61  -IPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKA 119

Query: 121 KEKLASK 128
           KEK+A K
Sbjct: 121 KEKVAPK 119

[Close]

BLAST of Spg004816 vs. TAIR 10
Match: AT3G28900.1 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 203.8 bits (517), Expect = 8.5e-53
Identity = 109/128 (85.16%), Postives = 112/128 (87.50%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGVRMILCL 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTT KRASGPKCPVTGKRIQG       
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQG------- 60

Query: 61  FIPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKA 120
            IPHLRPAEYKRSRLARN RTVNRAYGGVLSG AVRERI+RAFLVEEQKIVKKVLK+QKA
Sbjct: 61  -IPHLRPAEYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKA 120

Query: 121 KEKLASKS 129
           KEK A KS
Sbjct: 121 KEKTAPKS 120

[Close]

BLAST of Spg004816 vs. TAIR 10
Match: AT1G26880.2 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 166.8 bits (421), Expect = 1.2e-41
Identity = 84/100 (84.00%), Postives = 88/100 (88.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGVRMILCL 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKLVYQTTKKRASGPKCPVTGKRIQG       
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQG------- 60

Query: 61  FIPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERII 101
            IPHLRP+EYKRSRL+RNRRTVNRAYGGVLSG AVRER +
Sbjct: 61  -IPHLRPSEYKRSRLSRNRRTVNRAYGGVLSGSAVRERFV 92

The following BLAST results are available for this feature:

BLAST of Spg004816 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138175.3	3.3e-54	93.75	60S ribosomal protein L34 [Cucumis sativus] >XP_022152880.1 60S ribosomal protei...	[more]
KAG6583599.1	3.3e-54	93.75	Crooked neck-like protein 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
GAY36642.1	7.2e-54	90.77	hypothetical protein CUMW_023530 [Citrus unshiu]	[more]
XP_010044743.1	7.2e-54	92.97	60S ribosomal protein L34 [Eucalyptus grandis] >XP_030441919.1 60S ribosomal pro...	[more]
XP_038893923.1	7.2e-54	92.97	60S ribosomal protein L34-like [Benincasa hispida]	[more]

BLAST of Spg004816 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P41098	1.2e-54	89.06	60S ribosomal protein L34 OS=Nicotiana tabacum OX=4097 GN=RPL34 PE=2 SV=1	[more]
P40590	4.4e-54	88.28	60S ribosomal protein L34 OS=Pisum sativum OX=3888 GN=RPL34 PE=2 SV=1	[more]
Q42351	6.4e-53	85.94	60S ribosomal protein L34-1 OS=Arabidopsis thaliana OX=3702 GN=RPL34A PE=2 SV=1	[more]
Q9FE65	3.2e-52	85.83	60S ribosomal protein L34-2 OS=Arabidopsis thaliana OX=3702 GN=RPL34B PE=3 SV=1	[more]
Q9LJW6	1.2e-51	85.16	60S ribosomal protein L34-3 OS=Arabidopsis thaliana OX=3702 GN=RPL34C PE=2 SV=1	[more]

BLAST of Spg004816 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I6I6	1.6e-54	93.75	60S ribosomal protein L34-like OS=Cucurbita maxima OX=3661 GN=LOC111471563 PE=3 ...	[more]
A0A6J1HLN7	1.6e-54	93.75	60S ribosomal protein L34-like OS=Cucurbita moschata OX=3662 GN=LOC111464723 PE=...	[more]
A0A6J1DF78	1.6e-54	93.75	60S ribosomal protein L34 OS=Momordica charantia OX=3673 GN=LOC111020506 PE=3 SV...	[more]
A0A6J1JDI0	3.5e-54	92.97	60S ribosomal protein L34-like OS=Cucurbita maxima OX=3661 GN=LOC111484827 PE=3 ...	[more]
A0A059D9F6	3.5e-54	92.97	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03442 PE=3 SV...	[more]

BLAST of Spg004816 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26880.1	4.5e-54	85.94	Ribosomal protein L34e superfamily protein	[more]
AT1G69620.1	2.2e-53	85.83	ribosomal protein L34	[more]
AT3G28900.1	8.5e-53	85.16	Ribosomal protein L34e superfamily protein	[more]
AT1G26880.2	1.2e-41	84.00	Ribosomal protein L34e superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008195	Ribosomal protein L34Ae	PRINTS	PR01250	RIBOSOMALL34	coord: 13..26 score: 59.18 coord: 26..43 score: 53.57 coord: 44..54 score: 48.7
IPR008195	Ribosomal protein L34Ae	PFAM	PF01199	Ribosomal_L34e	coord: 1..104 e-value: 4.0E-33 score: 113.5
IPR008195	Ribosomal protein L34Ae	PANTHER	PTHR10759	60S RIBOSOMAL PROTEIN L34	coord: 1..128
None	No IPR available	GENE3D	6.20.370.70		coord: 1..37 e-value: 5.1E-22 score: 79.3
None	No IPR available	GENE3D	6.20.340.10		coord: 39..128 e-value: 2.2E-30 score: 106.4
None	No IPR available	PANTHER	PTHR10759:SF14	SUBFAMILY NOT NAMED	coord: 1..128
IPR018065	Ribosomal protein L34e, conserved site	PROSITE	PS01145	RIBOSOMAL_L34E	coord: 15..28

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg004816.1	Spg004816.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome