Spg004774 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg004774
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description40S ribosomal protein S13
Locationscaffold5: 21591662 .. 21595769 (-)
RNA-Seq ExpressionSpg004774
SyntenySpg004774
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCGTCGAAGACCCCGTCGCTAGCGCTTGGAGTCCCTCCGAGCACGCCTTGAGCCTCCTAGAGTGCTCCCCAAAGCTCCCCAAAATTTTCCCACTAAGAACTCTCAAAAAGGCTAAAAAGCCTTGAGAGAAGGCTCAAAAAGAGCCAAGGAAGGAAAGGAAGGAAAGAATATGGAATGATTGATGATAAAAATGGGCACCAAGGGAGGCATTATATAGGCCCGGAAATAGGACAGTGTCGCGACGTTGTGACGTCACCCAACTTGCTAGCCAAGAAATGGGACAGCATCTCGACGCTATGCAGATTCCAGAACAGTCCACGCGATTTGGGCTTGAAATTTGGGCCAACTTCAATTCTTTTTTGATCTTCTCTTGAATAGTTGACTATTGGGCTCCCCCTTTGACCCATGCTTGGATATTTGGCTTGGAATGCTCATTTTTGGGCCTTTTTTTTCCACCAAAAATCCACAAAGTGTTCCGTAGGACAAAATAATGAATTAGTTTAGAATTTCTCAATAAAAACACAATTAAAGCACTAAAAAGCTTAATATTTTAGGACTAAAATAGCGACATTTCTGTTCGTCATCAATCTGCATGCCACTTTTGAAATTAGGAGTTATGCGTATTTATTTATCTTTACTTTAAAATTTTACTTAGAAGTGTTGTGATAATGGACATTGCGATGTATATAATTGAATTATGCAGGTGTATGAACCTCGTGCTTAAAAATAAACTTACTATGTGGAATGGTGACTACGTTGGAGTTGATGAGCTCATTGCTTATATAAAGACAGACAAGGTACTTCATTAAACGTTTTGACTATAGACTATTGTGGTGATGTTTTTCTGTATTCCCACCAGGTCAACAGGGGCATTGCTGTCTTGAGAAACATTGCATCAAACTTTTACCTCTTGGAATTTGATACATGAATTAGTTATGAATTTAGCTTTGAAGTTAGTGCCTCTAGTTTTAAGAAGTCATGCTTATTTAAAGAACTCATACTCTCATAATTTTGTTTGTTACGCAATTACTAGTTTGTGGGTTTTGTCCATAGGGGAAGCTAATTCAACTTCCTAATTAACTTTGCTATATATTGGTGAGAAAGTTGTTAATTGTGAAGGCCTATTAGTCTTGTCCTCTTAAGTCTTGCATTTTAGTGACTTTTGTTGTTAAATCAATATGTAACAGGAGTTATTTTGCTCTTCATTGTGCCTGTGTGTAGTGAAAGCAATAGTAGAGATCAAGAAGCAGTATGTAGTATTTGATGCAAAGGTGCTTTCTAAAATTTCAAGAGGACCACTGAAGGACAAAAAGATTGCTTGAGTAGATAGGTGCCTCACTGTTGTGGTAGCAGTCCTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCAAAATATGCATTTGGTAGGCTTTTTGTCATTGGCATTGTGAAGTTTCATCCATGAAAGAAACTGTTTTTATTAATTAATCTGTAGTTTTTCTTTTGGTGATGAATTATTGCTTAGGCTATGTTTGGGAATGATTTTGACATGGTCAAAATCAATTTCACCATTGTCAAAATTAATTTCCTCTAAAATAAAAATGTTTGGGAAATAGATAAATTGATTTTTAAAAAATCTAGAATCAATTTAAATTGATTTTTGAGAAATTTGTTGGGAGGTGATTTTTTATGTGGTGATTGACCGGGAATCACCTCCCAACTTTGTTTTTTTTTTTTTTTTTAGAAGTCCCAACCGTGGGTGGATTCTATTTTGGGCATTTGGTTTCTTTGCCTTTTCTTTTCCATAATTTATTATTTTTCAGTAAAATTTGTTAGTATTGGTAGTTTTTAAAGACTCTTTCATAATTTCTCTCCAATTTTATTATATTCTATTACCATGAGGGACCAATTGTTCATTTCTTGGTTTCCAAAAATGTAGATATTTCATTATAAATATATATATATGATTTCCCCATAAATTTGTAAGGAGTCATGACATACATGTTATATTTTAAATGAAGTGAAAAATATATAGAACGATCTTAGTTTGTCATAATTCAAAAAGTATACTTAGAACAATTAAAATTTCATTAGTTTTCTTCTAGTTTCAACCCTATATAGTTTGTAAAATGAAAAGATTATATATGTGTCTATATAAACAATTAACGTAAGCAAACGTTGCCATTCTGTAAAAAAAAAAATATATATGCGGGTTCGTCGAGACTATTTTATGGTCAAGAAATTGTGATATGGGAGCCTCTACCTTAACAAAGGTTGCCTTAACACGAGTCATAAGACCACCATTTCAAAAAATATTCCATGATTTATTAGAAAAATTAGTCATCTAATATATGTATATAGTTGATATTGACCTAATAAAACGAACACCATCTTTAAGAACTTAATTAAAGATTATATATATATATATAAAAGGTTGAGTGTCTTATATTTTACAATAGTTTGATTTGAATGGTTCATTTAGAGAAACATGTGTAGAAATATATTATATATGTGCAATGGGTTTACATAAGACTAAACTTCAACATATTTATTCTATATTATTAAGTAAAATAATTTATTGAATGTAAAATGCCCTTTTAGTAATTTGGAAATTCTAAAATCATATTTGAAACCAAACATAATATTTAAAAATCACTTTTAAATACATGAAAATCACTTTTTAAAGTCTGAAACCAAACATAAATATGATTGTATGAAAATCAATTTCATAAAATCTTTTTTTCCTAAATCAATAATTCAATCATCACTCCCAAACATAGCCTTAGTTTTACTTGAACATCTATAGACGTATTAGAGATCAATTCTTTTTTTTTTTTTTTTTTTTTTGAAGATATTGAGTTCAGTACAATTTTCCTTGCTTTAAGTGTTTCGACTGTCTTGCCAACAAGAGCTTAGTTCAACTGGCATTAAGCTGTACTGATGACCACAAGGTTTGTGGTTCGAATCCCCCTCCACACATATTATCAAAAAAAAAAAAAAAAAAAAAAAAGTGTTTCGACTGTCTTGAGAGTTTTTGGGGAGCATACCTATGGGTCTGTGGTGTTGTGTTCGCTTGTCTTTACTAAGTTTGTTTTGCGGTTTAGTTAGAACAAACAATTAAACGTTCATTTTTCAAATTTATTTTGTTAAAGGCAAAACTGATTATGTGTTCGTATGCAGTTGATATATTTCTCTTCTAAGTCATTAACTCCACTGTGCATATTAATCACATTTCCAACCCCGAGGGAAGTTGCAAGATCGGAGGTGTAGAGGAATTGCTTACCTACAGGAAAACTCAATGAGGAGGATTGGGTGACTGTCTATGGGTGAGTTCTCTATTCCATTTTCCAATCTACTTTTGTTTACCTGCTTTATTTCACTATGGTTTTCTCAGTTTGATGTTCTTTTTCATTTAGACTCTTCCAGTCAATGTATTATTTCTTGTCCTGTAACTTGTGTTTGTATACTTTTGAATTTATATGAAAAAAAAAACATTAAACAATAATAAAAACGTAGGTAGGTGGAGATTGAGAGGAAGAAAGATACTTCTTTATTTTATTTTCTGATGAACTTTTCTGATAGAAAATGGAATGTGTTGATTCATCTTGTTTAAGAAGGATGGAGGGAGATGCTTGGATGGATAGTGTTTTCCTTTTTTGAAAACTTTTTTTTTTCTTTCATTTTCCTATGCTTTTTTCTTGGATTTGATCATTTTATGTCTTGGAGAGGATGGATAGTGGGATTTTGAGCCACTCTGTTAGAATGTGAGTAAAAGAACCAAACCAACAGACACAAACATAAAGCACCACAAACATTTATACATGTTACCCTAACCAACAAGTTCTCATTCTTGGACTTTCTATGCAAATGAAACCTGCCAGAATTATTATGTTATTCTTTTTAACATGTTTTCTTTTTTGGCTCAGGGCTAGCTCCTAAAATCTTGGAAGATCTTTACCATCTCATCAAGAAAGTTGTTTCAATTAGAAAGCATTTGGAGAGAAACAGGAAAGACAAGGATTCCAAGTTCAAGTTGCTTTTGGTGGAGAGCAGGATCCATCGCCTGACCCGGTATTACAAGAAGACAAAGAAGCTTCCCCTTGTTTGGAAGTAG

mRNA sequence

ATGACCGTCGAAGACCCCGTCGCTAGCGCTTGGAGTCCCTCCGAGCACGCCTTGAGCCTCCTAGAGTGTATGAACCTCGTGCTTAAAAATAAACTTACTATGTGGAATGGTGACTACGTTGGAGTTGATGAGCTCATTGCTTATATAAAGACAGACAAGGAGTTATTTTGCTCTTCATTGTGCCTGTGTGTAGTGAAAGCAATAGTAGAGATCAAGAAGCAGTATGTAGTATTTGATGCAAAGTGTTTCGACTGTCTTGCCAACAAGAGCTTAGTTCAACTGGCATTAAGCTGTACTGATGACCACAAGTTTGATGTTCTTTTTCATTTAGACTCTTCCAGTCAATGGCTAGCTCCTAAAATCTTGGAAGATCTTTACCATCTCATCAAGAAAGTTGTTTCAATTAGAAAGCATTTGGAGAGAAACAGGAAAGACAAGGATTCCAAGTTCAAGTTGCTTTTGGTGGAGAGCAGGATCCATCGCCTGACCCGGTATTACAAGAAGACAAAGAAGCTTCCCCTTGTTTGGAAGTAG

Coding sequence (CDS)

ATGACCGTCGAAGACCCCGTCGCTAGCGCTTGGAGTCCCTCCGAGCACGCCTTGAGCCTCCTAGAGTGTATGAACCTCGTGCTTAAAAATAAACTTACTATGTGGAATGGTGACTACGTTGGAGTTGATGAGCTCATTGCTTATATAAAGACAGACAAGGAGTTATTTTGCTCTTCATTGTGCCTGTGTGTAGTGAAAGCAATAGTAGAGATCAAGAAGCAGTATGTAGTATTTGATGCAAAGTGTTTCGACTGTCTTGCCAACAAGAGCTTAGTTCAACTGGCATTAAGCTGTACTGATGACCACAAGTTTGATGTTCTTTTTCATTTAGACTCTTCCAGTCAATGGCTAGCTCCTAAAATCTTGGAAGATCTTTACCATCTCATCAAGAAAGTTGTTTCAATTAGAAAGCATTTGGAGAGAAACAGGAAAGACAAGGATTCCAAGTTCAAGTTGCTTTTGGTGGAGAGCAGGATCCATCGCCTGACCCGGTATTACAAGAAGACAAAGAAGCTTCCCCTTGTTTGGAAGTAG

Protein sequence

MTVEDPVASAWSPSEHALSLLECMNLVLKNKLTMWNGDYVGVDELIAYIKTDKELFCSSLCLCVVKAIVEIKKQYVVFDAKCFDCLANKSLVQLALSCTDDHKFDVLFHLDSSSQWLAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK
Homology
[Close]
BLAST of Spg004774 vs. NCBI nr
Match: RYR57364.1 (hypothetical protein Ahy_A05g023101 isoform C [Arachis hypogaea])

HSP 1 Score: 115.2 bits (287), Expect = 5.9e-22
Identity = 61/95 (64.21%), Postives = 72/95 (75.79%), Query Frame = 0 

Query: 83  FDCLANKSLVQLALSCTDDHKFDVLFHLDSSSQWLAPKILEDLYHLIKKVVSIRKHLERN 142
           F  ++N  + ++ L  T    ++ L H    +  LAP+I EDLYHLIKKVVSIRKHLERN
Sbjct: 152 FTTMSNIVIREILLRATTRLPWETL-HAYEEAHGLAPEIPEDLYHLIKKVVSIRKHLERN 211

Query: 143 RKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK 178
           RKDKDSKF+L+LVESRIHRL RYYKKTKKLP VWK
Sbjct: 212 RKDKDSKFRLILVESRIHRLARYYKKTKKLPAVWK 245

[Close]
BLAST of Spg004774 vs. NCBI nr
Match: KAG6390141.1 (hypothetical protein SASPL_151623 [Salvia splendens])

HSP 1 Score: 112.5 bits (280), Expect = 3.8e-21
Identity = 55/68 (80.88%), Postives = 60/68 (88.24%), Query Frame = 0 

Query: 110 LDSSSQWLAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKT 169
           +D    WLAP+I EDLYHLIKK V+IRKHLERNRKDKDSKF+L+LVESRIHRL RYYKKT
Sbjct: 82  MDPLVLWLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKT 141

Query: 170 KKLPLVWK 178
           KKLP VWK
Sbjct: 142 KKLPPVWK 149

[Close]
BLAST of Spg004774 vs. NCBI nr
Match: XP_004147941.1 (40S ribosomal protein S13 [Cucumis sativus] >KGN55912.1 hypothetical protein Csa_010422 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-20
Identity = 55/64 (85.94%), Postives = 59/64 (92.19%), Query Frame = 0 

Query: 114 SQWLAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLP 173
           +Q LAP+I EDLYHLIKK VSIRKHLERNRKDKDSKF+L+LVESRIHRL RYYKKTKKLP
Sbjct: 77  AQGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLP 136

Query: 174 LVWK 178
            VWK
Sbjct: 137 PVWK 140

[Close]
BLAST of Spg004774 vs. NCBI nr
Match: EXC17873.1 (40S ribosomal protein S13 [Morus notabilis])

HSP 1 Score: 109.4 bits (272), Expect = 3.3e-20
Identity = 55/64 (85.94%), Postives = 58/64 (90.62%), Query Frame = 0 

Query: 114 SQWLAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLP 173
           S  LAP+I EDLYHLIKK VSIRKHLERNRKDKDSKF+L+LVESRIHRL RYYKKTKKLP
Sbjct: 57  SHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLP 116

Query: 174 LVWK 178
            VWK
Sbjct: 117 PVWK 120

[Close]
BLAST of Spg004774 vs. NCBI nr
Match: BBH02569.1 (ribosomal protein S13A [Prunus dulcis])

HSP 1 Score: 109.4 bits (272), Expect = 3.3e-20
Identity = 59/100 (59.00%), Postives = 69/100 (69.00%), Query Frame = 0 

Query: 85  CLANKSLVQLALSCTDDHKFDVLFHLDSS-------SQWLAPKILEDLYHLIKKVVSIRK 144
           C    + +Q+ +   D H    +  +  S       +  LAP+I EDLYHLIKK VSIRK
Sbjct: 95  CQEGSNTLQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK 154

Query: 145 HLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK 178
           HLERNRKDKDSKF+L+LVESRIHRL RYYKKTKKLP VWK
Sbjct: 155 HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 194

[Close]
BLAST of Spg004774 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 7.3e-23
Identity = 54/61 (88.52%), Postives = 57/61 (93.44%), Query Frame = 0 

Query: 117 LAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVW 176
           LAP+I EDLYHLIKK VSIRKHLERNRKDKDSKF+L+LVESRIHRL RYYKKTKKLP VW
Sbjct: 80  LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139

Query: 177 K 178
           K
Sbjct: 140 K 140

[Close]
BLAST of Spg004774 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.6e-22
Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = 0 

Query: 117 LAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVW 176
           LAP+I EDLYHLIKK V+IRKHLERNRKDKDSKF+L+LVESRIHRL RYYKKTKKLP VW
Sbjct: 80  LAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139

Query: 177 K 178
           K
Sbjct: 140 K 140

[Close]
BLAST of Spg004774 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.6e-22
Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = 0 

Query: 117 LAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVW 176
           LAP+I EDLYHLIKK V+IRKHLERNRKDKDSKF+L+LVESRIHRL RYYKKTKKLP VW
Sbjct: 80  LAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139

Query: 177 K 178
           K
Sbjct: 140 K 140

[Close]
BLAST of Spg004774 vs. ExPASy Swiss-Prot
Match: P46298 (40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 8.0e-22
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 0 

Query: 117 LAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVW 176
           LAP+I EDLYHLIKK VSIRKHLER RKDKDSKF+L+LVESRIHRL RYYKKTKKLP VW
Sbjct: 80  LAPEIPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139

Query: 177 K 178
           K
Sbjct: 140 K 140

[Close]
BLAST of Spg004774 vs. ExPASy Swiss-Prot
Match: Q69UI2 (40S ribosomal protein S13-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0117200 PE=3 SV=2)

HSP 1 Score: 101.3 bits (251), Expect = 1.2e-20
Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = 0 

Query: 117 LAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVW 176
           LAP+I EDLY LIKK V+IRKHLERNRKDKDSKF+L+LVESRIHRL RYYK+TKKLP  W
Sbjct: 80  LAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTW 139

Query: 177 K 178
           K
Sbjct: 140 K 140

[Close]
BLAST of Spg004774 vs. ExPASy TrEMBL
Match: A0A445D2V6 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A05g023101 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.9e-22
Identity = 61/95 (64.21%), Postives = 72/95 (75.79%), Query Frame = 0 

Query: 83  FDCLANKSLVQLALSCTDDHKFDVLFHLDSSSQWLAPKILEDLYHLIKKVVSIRKHLERN 142
           F  ++N  + ++ L  T    ++ L H    +  LAP+I EDLYHLIKKVVSIRKHLERN
Sbjct: 152 FTTMSNIVIREILLRATTRLPWETL-HAYEEAHGLAPEIPEDLYHLIKKVVSIRKHLERN 211

Query: 143 RKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK 178
           RKDKDSKF+L+LVESRIHRL RYYKKTKKLP VWK
Sbjct: 212 RKDKDSKFRLILVESRIHRLARYYKKTKKLPAVWK 245

[Close]
BLAST of Spg004774 vs. ExPASy TrEMBL
Match: A0A2N9FTI0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18131 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.9e-21
Identity = 64/111 (57.66%), Postives = 78/111 (70.27%), Query Frame = 0 

Query: 70  EIKKQY-VVFDAKCFDCLANKSLVQLALSCTDDH--KFDVLFHLDSSSQWLAPKILEDLY 129
           E++KQ+     AK    L+ +S+V+L     + H   FD+L  +  +   LAP+I EDLY
Sbjct: 4   ELQKQFEFAQQAKSSIRLSKRSVVELVQKLHELHVIDFDLLHTISGNEYSLAPEIPEDLY 63

Query: 130 HLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK 178
           HLIKK VSIRKHLERNR DKDSKF+L+LVESRI RL  YYKKTKKLP VWK
Sbjct: 64  HLIKKAVSIRKHLERNRNDKDSKFRLILVESRIQRLAHYYKKTKKLPPVWK 114

[Close]
BLAST of Spg004774 vs. ExPASy TrEMBL
Match: A0A4D9B4Z4 (Small subunit ribosomal protein S13e OS=Salvia splendens OX=180675 GN=RP-S13e PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.9e-21
Identity = 55/68 (80.88%), Postives = 60/68 (88.24%), Query Frame = 0 

Query: 110 LDSSSQWLAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKT 169
           +D    WLAP+I EDLYHLIKK V+IRKHLERNRKDKDSKF+L+LVESRIHRL RYYKKT
Sbjct: 82  MDPLVLWLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKT 141

Query: 170 KKLPLVWK 178
           KKLP VWK
Sbjct: 142 KKLPPVWK 149

[Close]
BLAST of Spg004774 vs. ExPASy TrEMBL
Match: A0A0A0L5N6 (Ribosomal_S13_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G035890 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 9.2e-21
Identity = 55/64 (85.94%), Postives = 59/64 (92.19%), Query Frame = 0 

Query: 114 SQWLAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLP 173
           +Q LAP+I EDLYHLIKK VSIRKHLERNRKDKDSKF+L+LVESRIHRL RYYKKTKKLP
Sbjct: 77  AQGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLP 136

Query: 174 LVWK 178
            VWK
Sbjct: 137 PVWK 140

[Close]
BLAST of Spg004774 vs. ExPASy TrEMBL
Match: A0A4Y1RE89 (Ribosomal protein S13A OS=Prunus dulcis OX=3755 GN=Prudu_013181 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.6e-20
Identity = 59/100 (59.00%), Postives = 69/100 (69.00%), Query Frame = 0 

Query: 85  CLANKSLVQLALSCTDDHKFDVLFHLDSS-------SQWLAPKILEDLYHLIKKVVSIRK 144
           C    + +Q+ +   D H    +  +  S       +  LAP+I EDLYHLIKK VSIRK
Sbjct: 95  CQEGSNTLQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK 154

Query: 145 HLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK 178
           HLERNRKDKDSKF+L+LVESRIHRL RYYKKTKKLP VWK
Sbjct: 155 HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 194

[Close]
BLAST of Spg004774 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 107.5 bits (267), Expect = 1.2e-23
Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = 0 

Query: 117 LAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVW 176
           LAP+I EDLYHLIKK V+IRKHLERNRKDKDSKF+L+LVESRIHRL RYYKKTKKLP VW
Sbjct: 80  LAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139

Query: 177 K 178
           K
Sbjct: 140 K 140

[Close]
BLAST of Spg004774 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 107.5 bits (267), Expect = 1.2e-23
Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = 0 

Query: 117 LAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVW 176
           LAP+I EDLYHLIKK V+IRKHLERNRKDKDSKF+L+LVESRIHRL RYYKKTKKLP VW
Sbjct: 80  LAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139

Query: 177 K 178
           K
Sbjct: 140 K 140

The following BLAST results are available for this feature:
BLAST of Spg004774 vs. NCBI nr
Match NameE-valueIdentityDescription
RYR57364.15.9e-2264.21hypothetical protein Ahy_A05g023101 isoform C [Arachis hypogaea][more]
KAG6390141.13.8e-2180.88hypothetical protein SASPL_151623 [Salvia splendens][more]
XP_004147941.11.9e-2085.9440S ribosomal protein S13 [Cucumis sativus] >KGN55912.1 hypothetical protein Csa... [more]
EXC17873.13.3e-2085.9440S ribosomal protein S13 [Morus notabilis][more]
BBH02569.13.3e-2059.00ribosomal protein S13A [Prunus dulcis][more]
BLAST of Spg004774 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P623027.3e-2388.5240S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1[more]
P592231.6e-2286.8940S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1[more]
P592241.6e-2286.8940S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1[more]
P462988.0e-2286.8940S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1[more]
Q69UI21.2e-2081.9740S ribosomal protein S13-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g011... [more]
BLAST of Spg004774 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A445D2V62.9e-2264.21Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A05g023101 PE=3 SV=1[more]
A0A2N9FTI01.9e-2157.66Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18131 PE=3 SV=1[more]
A0A4D9B4Z41.9e-2180.88Small subunit ribosomal protein S13e OS=Salvia splendens OX=180675 GN=RP-S13e PE... [more]
A0A0A0L5N69.2e-2185.94Ribosomal_S13_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G03... [more]
A0A4Y1RE891.6e-2059.00Ribosomal protein S13A OS=Prunus dulcis OX=3755 GN=Prudu_013181 PE=3 SV=1[more]
BLAST of Spg004774 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G60770.11.2e-2386.89Ribosomal protein S13/S15 [more]
AT4G00100.11.2e-2386.89ribosomal protein S13A [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000589Ribosomal protein S15SMARTSM01387Ribosomal_S15_2coord: 103..175
e-value: 1.4E-4
score: 12.5
IPR000589Ribosomal protein S15PFAMPF00312Ribosomal_S15coord: 123..170
e-value: 1.5E-11
score: 44.3
IPR000589Ribosomal protein S15PROSITEPS00362RIBOSOMAL_S15coord: 135..165
IPR000589Ribosomal protein S15CDDcd00353Ribosomal_S15p_S13ecoord: 119..177
e-value: 4.09656E-20
score: 77.9286
NoneNo IPR availableGENE3D1.10.287.10coord: 119..177
e-value: 5.4E-28
score: 99.1
NoneNo IPR availablePANTHERPTHR11885:SF2240S RIBOSOMAL PROTEIN S13coord: 115..177
IPR023029Ribosomal protein S15PPANTHERPTHR11885RIBOSOMAL PROTEIN S15P/S13Ecoord: 115..177
IPR009068S15/NS1, RNA-bindingSUPERFAMILY47060S15/NS1 RNA-binding domaincoord: 121..176

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg004774.1Spg004774.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005730 nucleolus
cellular_component GO:0005840 ribosome
molecular_function GO:0070181 small ribosomal subunit rRNA binding
molecular_function GO:0003735 structural constituent of ribosome