Spg004757 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg004757
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein EARLY RESPONSIVE TO DEHYDRATION 15-like
Location	scaffold5: 22815527 .. 22816181 (+)
RNA-Seq Expression	Spg004757
Synteny	Spg004757

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCCGTTGTTCGTTCCCATGGCCTAGAGGACGGTGGAGGATTTCTCCGACCAGTGGTGAGCTCTGATCCAGTCGTCGCCGTGGTTCCGTGAGTACTGGCTTCAAGAACGCTTTCAAGATCCTCAGAACAATCTTTCTTTTTCAGAGAATGAAGAAATTGTCCTTCCGGATCTCGAGAATTTCTTCGAGGACTTCGCTTGTCAATGTAAGAAACGAAATCGAGTCACTGATTGAGTCGATTCGTTCCCTCTCTTAATCGAACTCGCTAATTTGTTTGTTTCTTTTGTTTTCTTCTTCAGAGGAAGAGGAAGAATTGGAGTTCTCGAAGGATTTGGTTCCAATGGGGGCTTTCAAATGGCAGAAGGCTCGGACTGGAGAGGAGGGTCCTAGGTATGTTGAAAAGGCTCCCAAGATCGTGAACGTGAAAGTGAGTCTGAGGACGATTCACCAGCCGAGATAGACTGGACGCGGAATTCCGACCAAAAATTGCCTCGAATCCTTCTAGTTCTAGGGCTTTTTTTCGCAGGCGACGACTACGAAGAAGAAGAAGAAGACGACCCAAAAGAGTCCGTTGAAAAAACTGAAAGTTTTTATTGGGTTTTGCAGGCTGCTGTTTTCAAAGCGTTTTGCAGAGTTCCAATTCCAAGCTTTGA

mRNA sequence

ATGCTCCGTTGTTCGTTCCCATGGCCTAGAGGACGGTGGAGGATTTCTCCGACCAGTGAGGAAGAGGAAGAATTGGAGTTCTCGAAGGATTTGGTTCCAATGGGGGCTTTCAAATGGCAGAAGGCTCGGACTGGAGAGGAGGGTCCTAGGTATGTTGAAAAGGCTCCCAAGATCGTGAACGTGAAAAGTTCCAATTCCAAGCTTTGA

Coding sequence (CDS)

ATGCTCCGTTGTTCGTTCCCATGGCCTAGAGGACGGTGGAGGATTTCTCCGACCAGTGAGGAAGAGGAAGAATTGGAGTTCTCGAAGGATTTGGTTCCAATGGGGGCTTTCAAATGGCAGAAGGCTCGGACTGGAGAGGAGGGTCCTAGGTATGTTGAAAAGGCTCCCAAGATCGTGAACGTGAAAAGTTCCAATTCCAAGCTTTGA

Protein sequence

MLRCSFPWPRGRWRISPTSEEEEELEFSKDLVPMGAFKWQKARTGEEGPRYVEKAPKIVNVKSSNSKL

Homology

[Close]

BLAST of Spg004757 vs. NCBI nr
Match: NP_001295813.1 (protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Cucumis sativus] >AAQ18141.1 poly(A)-binding protein C-terminal interacting protein 6 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 3.6e-12
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 20  EEEEELEFSKDLVPMGAFKWQKARTGEEGPRYVEKAPKIVNVKSSNSK 68
           +EEEELEFSKDLVPMGAFKWQKAR+G E P+Y +KAPKIVNVK S S+
Sbjct: 88  QEEEELEFSKDLVPMGAFKWQKARSGAEVPKYAQKAPKIVNVKVSESE 135

[Close]

BLAST of Spg004757 vs. NCBI nr
Match: KAG6578462.1 (Protein EARLY RESPONSIVE TO DEHYDRATION 15, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-11
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 20  EEEEELEFSKDLVPMGAFKWQKARTGEEGPRYVEKAPKIVNVK 63
           +EEEELEFSKDLVPMGAFKW KARTG E PRY +KAPKIVNVK
Sbjct: 395 QEEEELEFSKDLVPMGAFKWHKARTGAEVPRYAQKAPKIVNVK 437

[Close]

BLAST of Spg004757 vs. NCBI nr
Match: KGN45812.1 (hypothetical protein Csa_005499 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-11
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 20  EEEEELEFSKDLVPMGAFKWQKARTGEEGPRYVEKAPKIVNVKSS 65
           +EEEELEFSKDLVPMGAFKWQKAR+G E P+Y +KAPKIVNVK S
Sbjct: 88  QEEEELEFSKDLVPMGAFKWQKARSGAEVPKYAQKAPKIVNVKVS 132

[Close]

BLAST of Spg004757 vs. NCBI nr
Match: XP_038884078.1 (protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Benincasa hispida])

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-11
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 20  EEEEELEFSKDLVPMGAFKWQKARTGEEGPRYVEKAPKIVNVKSS 65
           +EEEELEFSKDLVPMGAFKWQKAR+G E P+Y +KAPKIVNVK S
Sbjct: 88  QEEEELEFSKDLVPMGAFKWQKARSGAEVPKYAQKAPKIVNVKVS 132

[Close]

BLAST of Spg004757 vs. NCBI nr
Match: XP_022992587.1 (protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Cucurbita maxima])

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-11
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 20  EEEEELEFSKDLVPMGAFKWQKARTGEEGPRYVEKAPKIVNVK 63
           +EEEELEFSKDLVPMGAFKW KARTG E PRY +KAPKIVNVK
Sbjct: 88  QEEEELEFSKDLVPMGAFKWHKARTGAEVPRYAQKAPKIVNVK 130

[Close]

BLAST of Spg004757 vs. ExPASy TrEMBL
Match: Q6ELF9 (Poly(A)-binding protein C-terminal interacting protein 6 OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.8e-12
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 20  EEEEELEFSKDLVPMGAFKWQKARTGEEGPRYVEKAPKIVNVKSSNSK 68
           +EEEELEFSKDLVPMGAFKWQKAR+G E P+Y +KAPKIVNVK S S+
Sbjct: 88  QEEEELEFSKDLVPMGAFKWQKARSGAEVPKYAQKAPKIVNVKVSESE 135

[Close]

BLAST of Spg004757 vs. ExPASy TrEMBL
Match: A0A5D3BZS0 (Poly(A)-binding protein C-terminal interacting protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001350 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.1e-12
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 20  EEEEELEFSKDLVPMGAFKWQKARTGEEGPRYVEKAPKIVNVKSS 65
           +EEEELEFSKDLVPMGAFKWQKAR+G E P+Y +KAPKIVNVK S
Sbjct: 88  QEEEELEFSKDLVPMGAFKWQKARSGAEVPKYAQKAPKIVNVKVS 132

[Close]

BLAST of Spg004757 vs. ExPASy TrEMBL
Match: A0A6J1JQA7 (protein EARLY RESPONSIVE TO DEHYDRATION 15-like OS=Cucurbita maxima OX=3661 GN=LOC111488890 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.1e-12
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 20  EEEEELEFSKDLVPMGAFKWQKARTGEEGPRYVEKAPKIVNVK 63
           +EEEELEFSKDLVPMGAFKW KARTG E PRY +KAPKIVNVK
Sbjct: 88  QEEEELEFSKDLVPMGAFKWHKARTGAEVPRYAQKAPKIVNVK 130

[Close]

BLAST of Spg004757 vs. ExPASy TrEMBL
Match: A0A0A0KBP8 (Poly(A)-binding protein C-terminal interacting protein 6 OS=Cucumis sativus OX=3659 GN=Csa_6G013350 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.1e-12
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 20  EEEEELEFSKDLVPMGAFKWQKARTGEEGPRYVEKAPKIVNVKSS 65
           +EEEELEFSKDLVPMGAFKWQKAR+G E P+Y +KAPKIVNVK S
Sbjct: 88  QEEEELEFSKDLVPMGAFKWQKARSGAEVPKYAQKAPKIVNVKVS 132

[Close]

BLAST of Spg004757 vs. ExPASy TrEMBL
Match: A0A6J1FFC6 (protein EARLY RESPONSIVE TO DEHYDRATION 15-like OS=Cucurbita moschata OX=3662 GN=LOC111445213 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.1e-12
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 20  EEEEELEFSKDLVPMGAFKWQKARTGEEGPRYVEKAPKIVNVK 63
           +EEEELEFSKDLVPMGAFKW KARTG E PRY +KAPKIVNVK
Sbjct: 88  QEEEELEFSKDLVPMGAFKWHKARTGAEVPRYAQKAPKIVNVK 130

The following BLAST results are available for this feature:

BLAST of Spg004757 vs. NCBI nr


Match Name	E-value	Identity	Description
NP_001295813.1	3.6e-12	79.17	protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Cucumis sativus] >AAQ18141.1 po...	[more]
KAG6578462.1	1.1e-11	86.05	Protein EARLY RESPONSIVE TO DEHYDRATION 15, partial [Cucurbita argyrosperma subs...	[more]
KGN45812.1	1.1e-11	82.22	hypothetical protein Csa_005499 [Cucumis sativus]	[more]
XP_038884078.1	1.1e-11	82.22	protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Benincasa hispida]	[more]
XP_022992587.1	1.1e-11	86.05	protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Cucurbita maxima]	[more]

BLAST of Spg004757 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg004757 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q6ELF9	1.8e-12	79.17	Poly(A)-binding protein C-terminal interacting protein 6 OS=Cucumis sativus OX=3...	[more]
A0A5D3BZS0	5.1e-12	82.22	Poly(A)-binding protein C-terminal interacting protein 6 OS=Cucumis melo var. ma...	[more]
A0A6J1JQA7	5.1e-12	86.05	protein EARLY RESPONSIVE TO DEHYDRATION 15-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0KBP8	5.1e-12	82.22	Poly(A)-binding protein C-terminal interacting protein 6 OS=Cucumis sativus OX=3...	[more]
A0A6J1FFC6	5.1e-12	86.05	protein EARLY RESPONSIVE TO DEHYDRATION 15-like OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Spg004757 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg004757.1	Spg004757.1	mRNA