Spg004708 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg004708
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	histone H2B-like
Location	scaffold5: 19738748 .. 19739870 (+)
RNA-Seq Expression	Spg004708
Synteny	Spg004708

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCCAAGGCGATCCCGTAGAATCGTTGGTTCTGTCGTCCGGACGACGACGAAGGTAGTGGAAGAAACCGTGCAAGTGGCCGTGATGGAGAGAGAGAGCCAGGATCTGACTCAAGAACCCAAAACGGCGGAACCCGGTGGCGGCGAAGTGCTCCGGAGGACCATTCCGGTGGAAGAGAAGACTCCGCCACCAGAAGAACCCCAAACTATGCCGGTGAGGGAAGACTCCGAGGTGAAAAAGCCTGCGGATTCCACCTCACAGGTGACGGAGGACACTGATTTGACTCCGAAGATGGAACCCAAAATGAGGAATGGTAATTTAACATGATATTAAAGTAAATTTATTGATTTAAACTTTTGAGTTGAATGGCGATTTAACAGAGAAAGAAAGCAATGGAAGCTGGAGGAGAATTGTGAAGAAGAAGGGAGAAAGTGAAGGGAAAAGGAGAAGAAGTGGAAGCGGAAGAGAAGGATACAAAAGGTACGTGTTTAGGGTGTTGAAGCAGGTGCATCCGGAGATGGGGATATCGGGCCAAGCGATGGTGATTCTAAACAATTTGATGAACGACATGTTCGAAAGGCTGGCAGACGAAGCAACAAAACTCTCCAAGTACACAGGCAAGAATCAAATACCCAACTCTCACTTTCATGTAAATAACCTATTAGGTTGTTTTCAAATCTAGTCTGTTACTCCTACAAAGCTATGGGTCCTTTTTAAAGTTAAGTTTTATGTTGAATATTATTTTCAAACCAAAAAGGAAACCATGTAAATATGTTTCTAATTTTTCAAGAATTTTTTTTTTTTAAAAAAAGGTTAATAGTGACTAATTTTATTTTAGAAAATTAAGAAGAATCAAATTTAAGGTTTTTGGGGGTACTGGACTATAATTGAACATTTTCTAATTTAAAAGATGAAGAATTAAAATGAAAAAAAAAATTAACCAAAATTAAATATAAGATAAGGTTAGAGATAAGTTTATTTATTATTATTTTTAATATAATGATGTTTTGGATTTTGGTATTTTGTGGGTGATAGGGGGAATGACGCTGTCATCGAGGGAAATACAGGGGGCGGTGAGGCTAGTGTTGCCCGGAGAGCTAGGGAAGCACGCCATTGCTGA

mRNA sequence

ATGCCGCCAAGGCGATCCCGTAGAATCGTTGGTTCTGTCGTCCGGACGACGACGAAGGTAGTGGAAGAAACCGTGCAAGTGGCCGTGATGGAGAGAGAGAGCCAGGATCTGACTCAAGAACCCAAAACGGCGGAACCCGGTGGCGGCGAAGTGCTCCGGAGGACCATTCCGGTGGAAGAGAAGACTCCGCCACCAGAAGAACCCCAAACTATGCCGGTGAGGGAAGACTCCGAGGTGAAAAAGCCTGCGGATTCCACCTCACAGGTGACGGAGGACACTGATTTGACTCCGAAGATGGAACCCAAAATGAGGAATGAGAAAGAAAGCAATGGAAGCTGGAGGAGAATTGTGAAGAAGAAGGGAGAAAGTGAAGGGAAAAGGAGAAGAAGTGGAAGCGGAAGAGAAGGATACAAAAGGTACGTGTTTAGGGTGTTGAAGCAGGTGCATCCGGAGATGGGGATATCGGGCCAAGCGATGGTGATTCTAAACAATTTGATGAACGACATGTTCGAAAGGCTGGCAGACGAAGCAACAAAACTCTCCAAGGGGAATGACGCTGTCATCGAGGGAAATACAGGGGGCGGTGAGGCTAGTGTTGCCCGGAGAGCTAGGGAAGCACGCCATTGCTGA

Coding sequence (CDS)

ATGCCGCCAAGGCGATCCCGTAGAATCGTTGGTTCTGTCGTCCGGACGACGACGAAGGTAGTGGAAGAAACCGTGCAAGTGGCCGTGATGGAGAGAGAGAGCCAGGATCTGACTCAAGAACCCAAAACGGCGGAACCCGGTGGCGGCGAAGTGCTCCGGAGGACCATTCCGGTGGAAGAGAAGACTCCGCCACCAGAAGAACCCCAAACTATGCCGGTGAGGGAAGACTCCGAGGTGAAAAAGCCTGCGGATTCCACCTCACAGGTGACGGAGGACACTGATTTGACTCCGAAGATGGAACCCAAAATGAGGAATGAGAAAGAAAGCAATGGAAGCTGGAGGAGAATTGTGAAGAAGAAGGGAGAAAGTGAAGGGAAAAGGAGAAGAAGTGGAAGCGGAAGAGAAGGATACAAAAGGTACGTGTTTAGGGTGTTGAAGCAGGTGCATCCGGAGATGGGGATATCGGGCCAAGCGATGGTGATTCTAAACAATTTGATGAACGACATGTTCGAAAGGCTGGCAGACGAAGCAACAAAACTCTCCAAGGGGAATGACGCTGTCATCGAGGGAAATACAGGGGGCGGTGAGGCTAGTGTTGCCCGGAGAGCTAGGGAAGCACGCCATTGCTGA

Protein sequence

MPPRRSRRIVGSVVRTTTKVVEETVQVAVMERESQDLTQEPKTAEPGGGEVLRRTIPVEEKTPPPEEPQTMPVREDSEVKKPADSTSQVTEDTDLTPKMEPKMRNEKESNGSWRRIVKKKGESEGKRRRSGSGREGYKRYVFRVLKQVHPEMGISGQAMVILNNLMNDMFERLADEATKLSKGNDAVIEGNTGGGEASVARRAREARHC

Homology

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BLAST of Spg004708 vs. NCBI nr
Match: XP_022937553.1 (histone H2B.1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 248.8 bits (634), Expect = 4.1e-62
Identity = 147/209 (70.33%), Postives = 165/209 (78.95%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVQVAVMERESQDLTQEPKTAEPGGGEVLRRTIPVEE 60
           MPPRRSRRIVGSVVRTTTKVVEETV VAV+E ESQD+TQEP TAE GG  V RRTIPV  
Sbjct: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPV-- 60

Query: 61  KTPPPEEPQTMPVREDSEVKKPADSTSQVTEDTDLTPKMEPKMRNEKESNGSWRRIVKKK 120
                E+PQT PV  D ++ +P DSTS+VTED D+T KME K R+    +   R+  +KK
Sbjct: 61  -----EDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGVRES---RKKNEKK 120

Query: 121 GESEGKRRRSGSGREGYKRYVFRVLKQVHPEMGISGQAMVILNNLMNDMFERLADEATKL 180
            E E K+RRSG GREGYKRYVF+VLKQVHPE+GISGQAMVILNNLMNDMFERLA+EATKL
Sbjct: 121 KEREVKKRRSGGGREGYKRYVFKVLKQVHPEVGISGQAMVILNNLMNDMFERLAEEATKL 180

Query: 181 SKGNDAVIEGNTGGGEASVARRAREARHC 210
           SK  DAVI+G+TGGGEA    RAREAR C
Sbjct: 181 SKYTDAVIKGDTGGGEAGFPGRAREARRC 199

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BLAST of Spg004708 vs. NCBI nr
Match: XP_022969529.1 (histone H2B.4-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 245.7 bits (626), Expect = 3.4e-61
Identity = 147/209 (70.33%), Postives = 163/209 (77.99%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVQVAVMERESQDLTQEPKTAEPGGGEVLRRTIPVEE 60
           MPPRRSRRIVGSVVRTTTKVVEETV VAV+E ESQDLTQEP TAE GG EV RRTI V  
Sbjct: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDLTQEPATAETGGDEVFRRTIQV-- 60

Query: 61  KTPPPEEPQTMPVREDSEVKKPADSTSQVTEDTDLTPKMEPKMRNEKESNGSWRRIVKKK 120
                E+P+T  V  D ++ +P DSTS+VTED D+T KME K RN    +   R+  +KK
Sbjct: 61  -----EDPRTSTVWGDVKLTRPVDSTSEVTEDKDVTGKMESKPRNGVRGS---RKKNEKK 120

Query: 121 GESEGKRRRSGSGREGYKRYVFRVLKQVHPEMGISGQAMVILNNLMNDMFERLADEATKL 180
            E E K+RRS  GREGYKRYVF+VLKQVHPE+GISGQAMVILNNLMNDMFERLA+EATKL
Sbjct: 121 KEREVKKRRSREGREGYKRYVFKVLKQVHPEVGISGQAMVILNNLMNDMFERLAEEATKL 180

Query: 181 SKGNDAVIEGNTGGGEASVARRAREARHC 210
           SK  DAVI+GNTGGGE  V  RAREAR C
Sbjct: 181 SKYTDAVIKGNTGGGEVGVPGRAREARRC 199

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BLAST of Spg004708 vs. NCBI nr
Match: XP_038894659.1 (LOW QUALITY PROTEIN: histone H2B-like [Benincasa hispida])

HSP 1 Score: 236.9 bits (603), Expect = 1.6e-58
Identity = 135/189 (71.43%), Postives = 156/189 (82.54%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVQVAVMERESQDLTQEP---KTAEPGGGEVLRRTIP 60
           MPPRRSRR+VGSVVRTTT++VEETVQVAV+E+ESQDLTQEP   +TAE  GG+V RRTIP
Sbjct: 1   MPPRRSRRVVGSVVRTTTRMVEETVQVAVLEKESQDLTQEPETTQTAEGRGGDVFRRTIP 60

Query: 61  VEEKTPPPEEPQTMPVREDSEVKKPADSTSQVTEDTDLTPKMEPKMRNEKESNGSWRRIV 120
           VEEK PP E+P+T PV ED + +KP DSTSQ+TEDT  TP++EP++RN K+      R  
Sbjct: 61  VEEKAPPREQPKTFPVSEDFDTRKPTDSTSQLTEDTAATPEVEPEVRNGKKG-----RKR 120

Query: 121 KKKGESEGKRRR----SGSGREGYKRYVFRVLKQVHPEMGISGQAMVILNNLMNDMFERL 180
           KKK E EGKRRR     G GREGYKRYVF+VLKQVHPE+GISG+AMVILNN MNDMF+RL
Sbjct: 121 KKKMEKEGKRRRKSSGGGGGREGYKRYVFKVLKQVHPEIGISGKAMVILNNFMNDMFQRL 180

Query: 181 ADEATKLSK 183
           ADEATKLSK
Sbjct: 181 ADEATKLSK 184

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BLAST of Spg004708 vs. NCBI nr
Match: XP_008462313.1 (PREDICTED: histone H2B type 1-A-like [Cucumis melo])

HSP 1 Score: 224.6 bits (571), Expect = 8.2e-55
Identity = 131/189 (69.31%), Postives = 157/189 (83.07%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVQVAVMERESQDLTQEPKTAE--PGGGEVLRRTIPV 60
           MPPRRSRR+VGSVVRTTT+VVEETVQVAV+E+ESQDLTQEP TAE   GGGE+ RR +PV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETADGGGEMFRRPVPV 60

Query: 61  EE-KTP-PPEEPQTMPVREDSEVKKPADSTSQVTEDTDLTPKMEPKMRNEKESNGSWRRI 120
           EE K+P PPE+P T PV E+ EV++  DSTSQ+TEDT +TP+MEP+++  K+     ++ 
Sbjct: 61  EEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEPEVQKGKKGGRRKKKK 120

Query: 121 VKKKGESEGKRR---RSGSGREGYKRYVFRVLKQVHPEMGISGQAMVILNNLMNDMFERL 180
            KK+   EGKRR    SGSGREGYKRYVF+VLKQVHPE+GISGQAM+ILNN MNDMF+RL
Sbjct: 121 EKKREIKEGKRRSKNSSGSGREGYKRYVFKVLKQVHPEIGISGQAMLILNNFMNDMFQRL 180

Query: 181 ADEATKLSK 183
           A+EATKLSK
Sbjct: 181 AEEATKLSK 189

[Close]

BLAST of Spg004708 vs. NCBI nr
Match: XP_031736247.1 (histone H2B [Cucumis sativus] >KGN64870.1 hypothetical protein Csa_022747 [Cucumis sativus])

HSP 1 Score: 219.2 bits (557), Expect = 3.4e-53
Identity = 127/189 (67.20%), Postives = 152/189 (80.42%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVQVAVMERESQDLTQEPKTAE--PGGGEVLRRTIPV 60
           MPPRRSRR+VGSVVRTTT+VVEETVQVAV+E+ESQDLTQEP  AE   GGGE+ RRT+PV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60

Query: 61  EEKTPPPEEPQTMPVREDSEVKKPADSTSQVTEDTDLTPKMEPKMRNEKESNGSWRRIVK 120
           EE    P++P + PV ED E+++  DSTSQ+TEDT +TP+MEPK+R  K+     ++  +
Sbjct: 61  EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKKKE 120

Query: 121 KKGE-SEGKRRR----SGSGREGYKRYVFRVLKQVHPEMGISGQAMVILNNLMNDMFERL 180
           KK E  EGKRR      G GREGYKRYVF+VLKQVHPE+GISGQAM+ILNN MNDMF+RL
Sbjct: 121 KKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRL 180

Query: 181 ADEATKLSK 183
           A+EATKLSK
Sbjct: 181 AEEATKLSK 189

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BLAST of Spg004708 vs. ExPASy Swiss-Prot
Match: P54345 (Histone H2B.2 OS=Chlamydomonas reinhardtii OX=3055 PE=1 SV=3)

HSP 1 Score: 73.6 bits (179), Expect = 3.1e-12
Identity = 45/110 (40.91%), Postives = 68/110 (61.82%), Query Frame = 0


Query: 80  KKPADSTSQVTEDTDLTPKMEPKMRNEKESNGSWRRIVKK-----KGESEGKRRRSGSGR 139
           +KPA   +      + T K E K + EK +  + +   KK     KG+ E K ++  S  
Sbjct: 7   EKPATRAATQEAGVEATAKAEAKPKAEKAAKKAKKEPAKKAAKEPKGDGEKKDKKKKSAV 66

Query: 140 EGYKRYVFRVLKQVHPEMGISGQAMVILNNLMNDMFERLADEATKLSKGN 185
           E YK Y+++VLKQVHP+ GIS +AM I+N+ +ND+FE++A EA+KLS+ N
Sbjct: 67  ETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYN 116

[Close]

BLAST of Spg004708 vs. ExPASy Swiss-Prot
Match: Q9ZUS0 (Histone H2B.4 OS=Arabidopsis thaliana OX=3702 GN=At2g37470 PE=1 SV=3)

HSP 1 Score: 73.6 bits (179), Expect = 3.1e-12
Identity = 44/105 (41.90%), Postives = 65/105 (61.90%), Query Frame = 0


Query: 80  KKPADSTSQVTEDTDLTPKMEPKMRNEKESNGSWRRIVKKKGESEGKRRRSGSGREGYKR 139
           KKPA+         +  PK E             ++I K  G SE K+++S    E YK 
Sbjct: 8   KKPAEKKPAGKAPAEKLPKAE-------------KKISKDAGGSEKKKKKSKKSVETYKI 67

Query: 140 YVFRVLKQVHPEMGISGQAMVILNNLMNDMFERLADEATKLSKGN 185
           Y+F+VLKQVHP++GISG+AM I+N+ +ND+FE+LA E++KL++ N
Sbjct: 68  YIFKVLKQVHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYN 99

[Close]

BLAST of Spg004708 vs. ExPASy Swiss-Prot
Match: Q9LZ45 (Histone H2B.9 OS=Arabidopsis thaliana OX=3702 GN=At5g02570 PE=1 SV=3)

HSP 1 Score: 72.8 bits (177), Expect = 5.2e-12
Identity = 39/92 (42.39%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 95  LTPKMEPKMRNEKESNGSWRRIVKKKGESE--GKRRRSGSGREGYKRYVFRVLKQVHPEM 154
           + PK E K   +  +  + ++I K+ G SE   K++++    E YK Y+F+VLKQVHP++
Sbjct: 1   MAPKAEKKPAEKAPAPKAEKKIAKEGGTSEIVKKKKKTKKSTETYKIYIFKVLKQVHPDI 60

Query: 155 GISGQAMVILNNLMNDMFERLADEATKLSKGN 185
           GISG+AM I+N+ +ND+FE+LA E+++L++ N
Sbjct: 61  GISGKAMGIMNSFINDIFEKLAQESSRLARYN 92

[Close]

BLAST of Spg004708 vs. ExPASy Swiss-Prot
Match: Q9FFC0 (Histone H2B.10 OS=Arabidopsis thaliana OX=3702 GN=At5g22880 PE=1 SV=3)

HSP 1 Score: 72.4 bits (176), Expect = 6.8e-12
Identity = 43/105 (40.95%), Postives = 66/105 (62.86%), Query Frame = 0


Query: 80  KKPADSTSQVTEDTDLTPKMEPKMRNEKESNGSWRRIVKKKGESEGKRRRSGSGREGYKR 139
           KKPA+      +  + TP  EP    EK+     +   +  G  + K++RS    E YK 
Sbjct: 6   KKPAEK-----KPAEKTPAAEPAAAAEKKPKAGKKLPKEPAGAGDKKKKRSKKNVETYKI 65

Query: 140 YVFRVLKQVHPEMGISGQAMVILNNLMNDMFERLADEATKLSKGN 185
           Y+F+VLKQVHP++GIS +AM I+N+ +ND+FE+LA E++KL++ N
Sbjct: 66  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAGESSKLARYN 105

[Close]

BLAST of Spg004708 vs. ExPASy Swiss-Prot
Match: Q9SGE3 (Histone H2B.2 OS=Arabidopsis thaliana OX=3702 GN=At1g08170 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.8e-12
Identity = 69/207 (33.33%), Postives = 108/207 (52.17%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVQVAVME-------------RESQDLTQEPKTAEPG 60
           M PR+ + +    V    KVVEET++V V E             +E+QDLT     + P 
Sbjct: 1   MAPRKPKVV---SVTKKKKVVEETIKVTVTEEGDPCVITETANDQETQDLT----FSIPV 60

Query: 61  GGEVLRRTIPVEEKTPPPEEPQTMPVRED-SEVKKPADSTSQVTEDTDLT-------PKM 120
           G  V    IPVE     P+E +++PV E+ + VK P D   + +     T       P  
Sbjct: 61  GENVTTVEIPVE----VPDE-RSLPVGENVTTVKIPVDDRDESSPQPPETPVEVRDEPSP 120

Query: 121 EPKMRNEKESNGSWRRIVKKKGESEGKRRRSGSGREG-----YKRYVFRVLKQVHPEMGI 180
           +P      +S G+ ++  K + + E K+++    R+      Y+RYV++V+KQVHP++GI
Sbjct: 121 QPPETPASKSEGTLKKTDKVEKKQENKKKKKKKKRDDLAGDEYRRYVYKVMKQVHPDLGI 180

Query: 181 SGQAMVILNNLMNDMFERLADEATKLS 182
           + +AM ++N  M DMFER+A EA +LS
Sbjct: 181 TSKAMTVVNMFMGDMFERIAQEAARLS 195

[Close]

BLAST of Spg004708 vs. ExPASy TrEMBL
Match: A0A6J1FGB7 (histone H2B.1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443927 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 2.0e-62
Identity = 147/209 (70.33%), Postives = 165/209 (78.95%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVQVAVMERESQDLTQEPKTAEPGGGEVLRRTIPVEE 60
           MPPRRSRRIVGSVVRTTTKVVEETV VAV+E ESQD+TQEP TAE GG  V RRTIPV  
Sbjct: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPV-- 60

Query: 61  KTPPPEEPQTMPVREDSEVKKPADSTSQVTEDTDLTPKMEPKMRNEKESNGSWRRIVKKK 120
                E+PQT PV  D ++ +P DSTS+VTED D+T KME K R+    +   R+  +KK
Sbjct: 61  -----EDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGVRES---RKKNEKK 120

Query: 121 GESEGKRRRSGSGREGYKRYVFRVLKQVHPEMGISGQAMVILNNLMNDMFERLADEATKL 180
            E E K+RRSG GREGYKRYVF+VLKQVHPE+GISGQAMVILNNLMNDMFERLA+EATKL
Sbjct: 121 KEREVKKRRSGGGREGYKRYVFKVLKQVHPEVGISGQAMVILNNLMNDMFERLAEEATKL 180

Query: 181 SKGNDAVIEGNTGGGEASVARRAREARHC 210
           SK  DAVI+G+TGGGEA    RAREAR C
Sbjct: 181 SKYTDAVIKGDTGGGEAGFPGRAREARRC 199

[Close]

BLAST of Spg004708 vs. ExPASy TrEMBL
Match: A0A6J1I2V8 (histone H2B.4-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468518 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.7e-61
Identity = 147/209 (70.33%), Postives = 163/209 (77.99%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVQVAVMERESQDLTQEPKTAEPGGGEVLRRTIPVEE 60
           MPPRRSRRIVGSVVRTTTKVVEETV VAV+E ESQDLTQEP TAE GG EV RRTI V  
Sbjct: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDLTQEPATAETGGDEVFRRTIQV-- 60

Query: 61  KTPPPEEPQTMPVREDSEVKKPADSTSQVTEDTDLTPKMEPKMRNEKESNGSWRRIVKKK 120
                E+P+T  V  D ++ +P DSTS+VTED D+T KME K RN    +   R+  +KK
Sbjct: 61  -----EDPRTSTVWGDVKLTRPVDSTSEVTEDKDVTGKMESKPRNGVRGS---RKKNEKK 120

Query: 121 GESEGKRRRSGSGREGYKRYVFRVLKQVHPEMGISGQAMVILNNLMNDMFERLADEATKL 180
            E E K+RRS  GREGYKRYVF+VLKQVHPE+GISGQAMVILNNLMNDMFERLA+EATKL
Sbjct: 121 KEREVKKRRSREGREGYKRYVFKVLKQVHPEVGISGQAMVILNNLMNDMFERLAEEATKL 180

Query: 181 SKGNDAVIEGNTGGGEASVARRAREARHC 210
           SK  DAVI+GNTGGGE  V  RAREAR C
Sbjct: 181 SKYTDAVIKGNTGGGEVGVPGRAREARRC 199

[Close]

BLAST of Spg004708 vs. ExPASy TrEMBL
Match: A0A1S3CH74 (histone H2B type 1-A-like OS=Cucumis melo OX=3656 GN=LOC103500693 PE=3 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 4.0e-55
Identity = 131/189 (69.31%), Postives = 157/189 (83.07%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVQVAVMERESQDLTQEPKTAE--PGGGEVLRRTIPV 60
           MPPRRSRR+VGSVVRTTT+VVEETVQVAV+E+ESQDLTQEP TAE   GGGE+ RR +PV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETADGGGEMFRRPVPV 60

Query: 61  EE-KTP-PPEEPQTMPVREDSEVKKPADSTSQVTEDTDLTPKMEPKMRNEKESNGSWRRI 120
           EE K+P PPE+P T PV E+ EV++  DSTSQ+TEDT +TP+MEP+++  K+     ++ 
Sbjct: 61  EEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEPEVQKGKKGGRRKKKK 120

Query: 121 VKKKGESEGKRR---RSGSGREGYKRYVFRVLKQVHPEMGISGQAMVILNNLMNDMFERL 180
            KK+   EGKRR    SGSGREGYKRYVF+VLKQVHPE+GISGQAM+ILNN MNDMF+RL
Sbjct: 121 EKKREIKEGKRRSKNSSGSGREGYKRYVFKVLKQVHPEIGISGQAMLILNNFMNDMFQRL 180

Query: 181 ADEATKLSK 183
           A+EATKLSK
Sbjct: 181 AEEATKLSK 189

[Close]

BLAST of Spg004708 vs. ExPASy TrEMBL
Match: A0A0A0LSH9 (Histone domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G136770 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.7e-53
Identity = 127/189 (67.20%), Postives = 152/189 (80.42%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVQVAVMERESQDLTQEPKTAE--PGGGEVLRRTIPV 60
           MPPRRSRR+VGSVVRTTT+VVEETVQVAV+E+ESQDLTQEP  AE   GGGE+ RRT+PV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60

Query: 61  EEKTPPPEEPQTMPVREDSEVKKPADSTSQVTEDTDLTPKMEPKMRNEKESNGSWRRIVK 120
           EE    P++P + PV ED E+++  DSTSQ+TEDT +TP+MEPK+R  K+     ++  +
Sbjct: 61  EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKKKE 120

Query: 121 KKGE-SEGKRRR----SGSGREGYKRYVFRVLKQVHPEMGISGQAMVILNNLMNDMFERL 180
           KK E  EGKRR      G GREGYKRYVF+VLKQVHPE+GISGQAM+ILNN MNDMF+RL
Sbjct: 121 KKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRL 180

Query: 181 ADEATKLSK 183
           A+EATKLSK
Sbjct: 181 AEEATKLSK 189

[Close]

BLAST of Spg004708 vs. ExPASy TrEMBL
Match: A0A6J1FBI7 (histone H2B.6-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443927 PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 3.7e-53
Identity = 129/182 (70.88%), Postives = 145/182 (79.67%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVQVAVMERESQDLTQEPKTAEPGGGEVLRRTIPVEE 60
           MPPRRSRRIVGSVVRTTTKVVEETV VAV+E ESQD+TQEP TAE GG  V RRTIPV  
Sbjct: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPV-- 60

Query: 61  KTPPPEEPQTMPVREDSEVKKPADSTSQVTEDTDLTPKMEPKMRNEKESNGSWRRIVKKK 120
                E+PQT PV  D ++ +P DSTS+VTED D+T KME K R+    +   R+  +KK
Sbjct: 61  -----EDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGVRES---RKKNEKK 120

Query: 121 GESEGKRRRSGSGREGYKRYVFRVLKQVHPEMGISGQAMVILNNLMNDMFERLADEATKL 180
            E E K+RRSG GREGYKRYVF+VLKQVHPE+GISGQAMVILNNLMNDMFERLA+EATKL
Sbjct: 121 KEREVKKRRSGGGREGYKRYVFKVLKQVHPEVGISGQAMVILNNLMNDMFERLAEEATKL 172

Query: 181 SK 183
           SK
Sbjct: 181 SK 172

[Close]

BLAST of Spg004708 vs. TAIR 10
Match: AT2G37470.1 (Histone superfamily protein )

HSP 1 Score: 73.6 bits (179), Expect = 2.2e-13
Identity = 44/105 (41.90%), Postives = 65/105 (61.90%), Query Frame = 0


Query: 80  KKPADSTSQVTEDTDLTPKMEPKMRNEKESNGSWRRIVKKKGESEGKRRRSGSGREGYKR 139
           KKPA+         +  PK E             ++I K  G SE K+++S    E YK 
Sbjct: 8   KKPAEKKPAGKAPAEKLPKAE-------------KKISKDAGGSEKKKKKSKKSVETYKI 67

Query: 140 YVFRVLKQVHPEMGISGQAMVILNNLMNDMFERLADEATKLSKGN 185
           Y+F+VLKQVHP++GISG+AM I+N+ +ND+FE+LA E++KL++ N
Sbjct: 68  YIFKVLKQVHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYN 99

[Close]

BLAST of Spg004708 vs. TAIR 10
Match: AT5G02570.1 (Histone superfamily protein )

HSP 1 Score: 72.8 bits (177), Expect = 3.7e-13
Identity = 39/92 (42.39%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 95  LTPKMEPKMRNEKESNGSWRRIVKKKGESE--GKRRRSGSGREGYKRYVFRVLKQVHPEM 154
           + PK E K   +  +  + ++I K+ G SE   K++++    E YK Y+F+VLKQVHP++
Sbjct: 1   MAPKAEKKPAEKAPAPKAEKKIAKEGGTSEIVKKKKKTKKSTETYKIYIFKVLKQVHPDI 60

Query: 155 GISGQAMVILNNLMNDMFERLADEATKLSKGN 185
           GISG+AM I+N+ +ND+FE+LA E+++L++ N
Sbjct: 61  GISGKAMGIMNSFINDIFEKLAQESSRLARYN 92

[Close]

BLAST of Spg004708 vs. TAIR 10
Match: AT1G08170.1 (Histone superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 4.8e-13
Identity = 69/207 (33.33%), Postives = 108/207 (52.17%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVQVAVME-------------RESQDLTQEPKTAEPG 60
           M PR+ + +    V    KVVEET++V V E             +E+QDLT     + P 
Sbjct: 1   MAPRKPKVV---SVTKKKKVVEETIKVTVTEEGDPCVITETANDQETQDLT----FSIPV 60

Query: 61  GGEVLRRTIPVEEKTPPPEEPQTMPVRED-SEVKKPADSTSQVTEDTDLT-------PKM 120
           G  V    IPVE     P+E +++PV E+ + VK P D   + +     T       P  
Sbjct: 61  GENVTTVEIPVE----VPDE-RSLPVGENVTTVKIPVDDRDESSPQPPETPVEVRDEPSP 120

Query: 121 EPKMRNEKESNGSWRRIVKKKGESEGKRRRSGSGREG-----YKRYVFRVLKQVHPEMGI 180
           +P      +S G+ ++  K + + E K+++    R+      Y+RYV++V+KQVHP++GI
Sbjct: 121 QPPETPASKSEGTLKKTDKVEKKQENKKKKKKKKRDDLAGDEYRRYVYKVMKQVHPDLGI 180

Query: 181 SGQAMVILNNLMNDMFERLADEATKLS 182
           + +AM ++N  M DMFER+A EA +LS
Sbjct: 181 TSKAMTVVNMFMGDMFERIAQEAARLS 195

[Close]

BLAST of Spg004708 vs. TAIR 10
Match: AT3G53650.1 (Histone superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 4.8e-13
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 0


Query: 80  KKPADSTSQVTEDTDLTPKMEPKMRNEKESNGSWRRIVKKKGESEGKRRRSGSGREGYKR 139
           KKPA          +  PK E K              + K+G SE K+++S    E YK 
Sbjct: 8   KKPAGKKPAEKAPAEKLPKAEKK--------------ITKEGGSEKKKKKSKKNIETYKI 67

Query: 140 YVFRVLKQVHPEMGISGQAMVILNNLMNDMFERLADEATKLSKGN 185
           Y+F+VLKQVHP++GISG+AM I+N+ +ND+FE+LA E+++L++ N
Sbjct: 68  YIFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYN 98

[Close]

BLAST of Spg004708 vs. TAIR 10
Match: AT5G22880.1 (histone B2 )

HSP 1 Score: 72.4 bits (176), Expect = 4.8e-13
Identity = 43/105 (40.95%), Postives = 66/105 (62.86%), Query Frame = 0


Query: 80  KKPADSTSQVTEDTDLTPKMEPKMRNEKESNGSWRRIVKKKGESEGKRRRSGSGREGYKR 139
           KKPA+      +  + TP  EP    EK+     +   +  G  + K++RS    E YK 
Sbjct: 6   KKPAEK-----KPAEKTPAAEPAAAAEKKPKAGKKLPKEPAGAGDKKKKRSKKNVETYKI 65

Query: 140 YVFRVLKQVHPEMGISGQAMVILNNLMNDMFERLADEATKLSKGN 185
           Y+F+VLKQVHP++GIS +AM I+N+ +ND+FE+LA E++KL++ N
Sbjct: 66  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAGESSKLARYN 105

The following BLAST results are available for this feature:

BLAST of Spg004708 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937553.1	4.1e-62	70.33	histone H2B.1-like isoform X2 [Cucurbita moschata]	[more]
XP_022969529.1	3.4e-61	70.33	histone H2B.4-like isoform X2 [Cucurbita maxima]	[more]
XP_038894659.1	1.6e-58	71.43	LOW QUALITY PROTEIN: histone H2B-like [Benincasa hispida]	[more]
XP_008462313.1	8.2e-55	69.31	PREDICTED: histone H2B type 1-A-like [Cucumis melo]	[more]
XP_031736247.1	3.4e-53	67.20	histone H2B [Cucumis sativus] >KGN64870.1 hypothetical protein Csa_022747 [Cucum...	[more]

BLAST of Spg004708 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P54345	3.1e-12	40.91	Histone H2B.2 OS=Chlamydomonas reinhardtii OX=3055 PE=1 SV=3	[more]
Q9ZUS0	3.1e-12	41.90	Histone H2B.4 OS=Arabidopsis thaliana OX=3702 GN=At2g37470 PE=1 SV=3	[more]
Q9LZ45	5.2e-12	42.39	Histone H2B.9 OS=Arabidopsis thaliana OX=3702 GN=At5g02570 PE=1 SV=3	[more]
Q9FFC0	6.8e-12	40.95	Histone H2B.10 OS=Arabidopsis thaliana OX=3702 GN=At5g22880 PE=1 SV=3	[more]
Q9SGE3	6.8e-12	33.33	Histone H2B.2 OS=Arabidopsis thaliana OX=3702 GN=At1g08170 PE=2 SV=1	[more]

BLAST of Spg004708 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FGB7	2.0e-62	70.33	histone H2B.1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443927 PE=3...	[more]
A0A6J1I2V8	1.7e-61	70.33	histone H2B.4-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468518 PE=3 S...	[more]
A0A1S3CH74	4.0e-55	69.31	histone H2B type 1-A-like OS=Cucumis melo OX=3656 GN=LOC103500693 PE=3 SV=1	[more]
A0A0A0LSH9	1.7e-53	67.20	Histone domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G136770 PE=...	[more]
A0A6J1FBI7	3.7e-53	70.88	histone H2B.6-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443927 PE=3...	[more]

BLAST of Spg004708 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37470.1	2.2e-13	41.90	Histone superfamily protein	[more]
AT5G02570.1	3.7e-13	42.39	Histone superfamily protein	[more]
AT1G08170.1	4.8e-13	33.33	Histone superfamily protein	[more]
AT3G53650.1	4.8e-13	40.95	Histone superfamily protein	[more]
AT5G22880.1	4.8e-13	40.95	histone B2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 156..176 score: 50.98 coord: 137..155 score: 65.31
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 127..199 e-value: 4.2E-8 score: 42.9
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 1..182
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 83..182 e-value: 9.0E-14 score: 52.0
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 79..189 e-value: 4.7E-24 score: 86.7
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 118..184
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 185..209
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..134
None	No IPR available	PANTHER	PTHR23428:SF238	HISTONE H2B.2	coord: 1..182

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg004708.1	Spg004708.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity