Spg004544 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg004544
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold9: 8637068 .. 8638027 (+)
RNA-Seq Expression	Spg004544
Synteny	Spg004544

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAGGAGGTGTCCGTCACTCCCGAAGCACCAAAAGTGAAAGCAAAGAAGAAGAGAACACCTGAAGAAAAGGAAACTAAGAGGAGAAGAAGACAGCAAAAGATTGAAGATCAAGAGATAGTGCAGAAGGTAGTAGAAGATGTTGCTGCCACGGTGGTTGAAGAAGACGATCCGAAGGAACCAGAAGGACAGAATCAAGAGCAAACTGAGCCGATAGTTACGGAAGAAGTTCGAGAAGAAAATACAGAGGAGGTTCAAGAAAACCAGATTGTGAATGTGCAAGAAAAACAAGCGGAGAGTGCGCCTGAGAAGGGTCATGAGCAAGAACAGGAGGCTGGAGTGGAGGTCATCATGCCGAAAGTACCAAAACGTCGCCGTGTGAAGCGAAAAGCAGGTTGTGTTAAGGTAGTCCGACCTTATAATCCCTCGCCACCAACGAAAGATTCGGAGAAAAAAGAAGCTGAAGCCAAGGAAAGAGAGGAAGCAGAGAAAAGAGCCGAGGAGGAAATCTTGAGCAAGCAACGGGTAGACAAAGGCAAAGGCATTGCCGAAGCGTCACTGGAACCAGAGGAGGGCGAAACAGAGGAGCAGGCGTTGCCGTACAATCACTTCGTCAACAATCTTGCTAGAGCAAAATATGTTGAGATGCTGAAAAGAGATTTCCTGTTTGAAAGAGGATTCAGTGGTGATCTTCCGCACTTTCTGCGGGCCGACATTACGAACCACGGTTGGGAATTATTCTGTTCAAAGCCTGAACTTGTGAACGCGCAGGTAGTGCATGAGTTTTACGCCAATATTGATGAGGAGGAAGGTTTCCATGTTATTGTTCGAGGTGTGGAAGTCGACCGGAGTCGGGGTGCTTTTAACGCTCTGTATCACCTTCGAGATGTCCCGCACGCAGCATATAATGAGATGGCCGTGGCGCCATCAAATGAGCAGTTGAGCGATGCTGTGTGA

mRNA sequence

ATGGAAAAGGAGGTGTCCGTCACTCCCGAAGCACCAAAAGTGAAAGCAAAGAAGAAGAGAACACCTGAAGAAAAGGAAACTAAGAGGAGAAGAAGACAGCAAAAGATTGAAGATCAAGAGATAGTGCAGAAGGTAGTAGAAGATGTTGCTGCCACGGTGGTTGAAGAAGACGATCCGAAGGAACCAGAAGGACAGAATCAAGAGCAAACTGAGCCGATAGTTACGGAAGAAGTTCGAGAAGAAAATACAGAGGAGGTTCAAGAAAACCAGATTGTGAATGTGCAAGAAAAACAAGCGGAGAGTGCGCCTGAGAAGGGTCATGAGCAAGAACAGGAGGCTGGAGTGGAGGTCATCATGCCGAAAGTACCAAAACGTCGCCGTGTGAAGCGAAAAGCAGGTTGTGTTAAGGTAGTCCGACCTTATAATCCCTCGCCACCAACGAAAGATTCGGAGAAAAAAGAAGCTGAAGCCAAGGAAAGAGAGGAAGCAGAGAAAAGAGCCGAGGAGGAAATCTTGAGCAAGCAACGGGTAGACAAAGGCAAAGGCATTGCCGAAGCGTCACTGGAACCAGAGGAGGGCGAAACAGAGGAGCAGGCGTTGCCGTACAATCACTTCGTCAACAATCTTGCTAGAGCAAAATATGTTGAGATGCTGAAAAGAGATTTCCTGTTTGAAAGAGGATTCAGTGGTGATCTTCCGCACTTTCTGCGGGCCGACATTACGAACCACGGTTGGGAATTATTCTGTTCAAAGCCTGAACTTGTGAACGCGCAGGTAGTGCATGAGTTTTACGCCAATATTGATGAGGAGGAAGGTTTCCATGTTATTGTTCGAGGTGTGGAAGTCGACCGGAGTCGGGGTGCTTTTAACGCTCTGTATCACCTTCGAGATGTCCCGCACGCAGCATATAATGAGATGGCCGTGGCGCCATCAAATGAGCAGTTGAGCGATGCTGTGTGA

Coding sequence (CDS)

ATGGAAAAGGAGGTGTCCGTCACTCCCGAAGCACCAAAAGTGAAAGCAAAGAAGAAGAGAACACCTGAAGAAAAGGAAACTAAGAGGAGAAGAAGACAGCAAAAGATTGAAGATCAAGAGATAGTGCAGAAGGTAGTAGAAGATGTTGCTGCCACGGTGGTTGAAGAAGACGATCCGAAGGAACCAGAAGGACAGAATCAAGAGCAAACTGAGCCGATAGTTACGGAAGAAGTTCGAGAAGAAAATACAGAGGAGGTTCAAGAAAACCAGATTGTGAATGTGCAAGAAAAACAAGCGGAGAGTGCGCCTGAGAAGGGTCATGAGCAAGAACAGGAGGCTGGAGTGGAGGTCATCATGCCGAAAGTACCAAAACGTCGCCGTGTGAAGCGAAAAGCAGGTTGTGTTAAGGTAGTCCGACCTTATAATCCCTCGCCACCAACGAAAGATTCGGAGAAAAAAGAAGCTGAAGCCAAGGAAAGAGAGGAAGCAGAGAAAAGAGCCGAGGAGGAAATCTTGAGCAAGCAACGGGTAGACAAAGGCAAAGGCATTGCCGAAGCGTCACTGGAACCAGAGGAGGGCGAAACAGAGGAGCAGGCGTTGCCGTACAATCACTTCGTCAACAATCTTGCTAGAGCAAAATATGTTGAGATGCTGAAAAGAGATTTCCTGTTTGAAAGAGGATTCAGTGGTGATCTTCCGCACTTTCTGCGGGCCGACATTACGAACCACGGTTGGGAATTATTCTGTTCAAAGCCTGAACTTGTGAACGCGCAGGTAGTGCATGAGTTTTACGCCAATATTGATGAGGAGGAAGGTTTCCATGTTATTGTTCGAGGTGTGGAAGTCGACCGGAGTCGGGGTGCTTTTAACGCTCTGTATCACCTTCGAGATGTCCCGCACGCAGCATATAATGAGATGGCCGTGGCGCCATCAAATGAGCAGTTGAGCGATGCTGTGTGA

Protein sequence

MEKEVSVTPEAPKVKAKKKRTPEEKETKRRRRQQKIEDQEIVQKVVEDVAATVVEEDDPKEPEGQNQEQTEPIVTEEVREENTEEVQENQIVNVQEKQAESAPEKGHEQEQEAGVEVIMPKVPKRRRVKRKAGCVKVVRPYNPSPPTKDSEKKEAEAKEREEAEKRAEEEILSKQRVDKGKGIAEASLEPEEGETEEQALPYNHFVNNLARAKYVEMLKRDFLFERGFSGDLPHFLRADITNHGWELFCSKPELVNAQVVHEFYANIDEEEGFHVIVRGVEVDRSRGAFNALYHLRDVPHAAYNEMAVAPSNEQLSDAV

Homology

[Close]

BLAST of Spg004544 vs. NCBI nr
Match: XP_038898613.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC120086174 [Benincasa hispida])

HSP 1 Score: 56.2 bits (134), Expect = 5.9e-04
Identity = 71/259 (27.41%), Postives = 113/259 (43.63%), Query Frame = 0


Query: 71  EPIVTEEVREENTEEVQENQIVNVQE-------KQAESAPEKGHEQEQEAGVEVIMPKVP 130
           +P+ TEE      EE  +++++ ++E       K+A+    K  E E+EAGV        
Sbjct: 91  QPLPTEEETVVVAEEAIKDEVLAMEEIVGGVLPKEAKKKELKAAEAEKEAGV-------- 150

Query: 131 KRRRVKRKAGCVKVVRPYNPSPPTKDSEKKEAEAKEREEAEKRAEEEILSKQRVDKGKGI 190
              R+K+ A   K           +D +KK  + ++R+E EKR  +  +++    +GK +
Sbjct: 151 ---RLKKVAEAEK-----------EDKKKKMKKKEQRKEREKRLRQ--VARLAQARGKDV 210

Query: 191 AEASLEPEEGETEEQALPYNHFVNNLARAKYVEMLKRDFLFERGF---SGDLPHFLRADI 250
           AE+S EP   +        N                 D L E GF      LP  + + I
Sbjct: 211 AESS-EPASAKKRSAKRKEND----------------DMLIEMGFYPAPTPLPDLITSII 270

Query: 251 TNHGWELFCSKPELVNAQVVHEFYANIDEEEGFHVIVRGVEVDRSRGAFNALYHLRDVPH 310
             HGW+ F   P ++  QVVH+FY     E    V  +G  V  S    N LY +RD P 
Sbjct: 271 VEHGWDTFYQCPSIIVPQVVHDFYRGHLHENRDAVTFKGETVYFSTKNINGLYQMRDNPD 308

Query: 311 AAYNEMAVAPSNEQLSDAV 320
           A  N++   P+ E + +A+
Sbjct: 331 APGNKIIDDPTEELMRNAL 308

[Close]

BLAST of Spg004544 vs. ExPASy TrEMBL
Match: A0A4Q3ENY7 (Uncharacterized protein OS=Sphingobacteriaceae bacterium OX=2021370 GN=EOP45_09925 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.2e-06
Identity = 36/99 (36.36%), Postives = 52/99 (52.53%), Query Frame = 0


Query: 205 FVNNLARAKYVEMLKRDFLFERGFSGDLPHFLRADITN----HGWELFCSKPE-LVNAQV 264
           F +  A  +Y  +++R  +FERG        + + I N      W  FC+ PE   N  +
Sbjct: 8   FTSKAAEERYDILVQRSPIFERGLKVSSTTPIGSQINNTIEGFSWRKFCATPEHKANVTL 67

Query: 265 VHEFYANIDEEEGFHVIVRGVEVDRSRGAFNALYHLRDV 299
           ++EFYAN+ + E   V VRGV+VD S GA NAL    D+
Sbjct: 68  MYEFYANLPDHEDDVVTVRGVDVDCSVGAINALLGTPDI 106

The following BLAST results are available for this feature:

BLAST of Spg004544 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898613.1	5.9e-04	27.41	LOW QUALITY PROTEIN: uncharacterized protein LOC120086174 [Benincasa hispida]	[more]

BLAST of Spg004544 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg004544 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4Q3ENY7	5.2e-06	36.36	Uncharacterized protein OS=Sphingobacteriaceae bacterium OX=2021370 GN=EOP45_099...	[more]

BLAST of Spg004544 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 148..173
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..170
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg004544.1	Spg004544.1	mRNA