Spg004543 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg004543
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold9: 12063436 .. 12067944 (-)
RNA-Seq Expression	Spg004543
Synteny	Spg004543

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCCAGTAGCAGTCAAGGTAGTGGACGTTCTGGCCCTCCAGACGTTCCCGAGGTTAATTCGCATCCTGAGGCAAATCCTCCCATTCTTCCCCCAGCACCTATTGTGCTGGCAGCAGAGGCATTGCAAGCGATGCATGGCAATGCAATCCCGAACAACCTGCAGCACATCGATGCAAACGAAGCCCCTGCTCTTGGCGTAGATGTGCAGTTTTTCAAGAGCTTCATGAAGGCGAAGCCTCCTTCATTCGATGGACACTCGGAAAGTTCTGAAGCAGTGGTAGAATGGACTGCCGCGTTGGAAGCGATATTTCAATTTCTTGGAGCTGATGCCCAACAACGAGTCCAAGGAGCTGCCTTTATGCTTAAGGGCTACGCTCGCACTTGGTGGAACGTAGTGGGTCAAACCGAGAACCGCCCAGAGAACCCCATTTCCTGGTCAGGGTTCAAAGGCCTTGTGCGAGACCATTTTGACTGTCGTTTTGCTGATGTTGAGCTCGAAGCGGAGTTCATCTCACTTGTTCAAGGGACCTTGTCTGTGGAGCAGTACGTCAGAAGGTTCGAAGAGTTGTCCTACCGAGTCCTGGAGTTGGTTGCCACCGAAGAAATCAGGATCAATCGATTCATTAATGGTCTCCGTGCAGAAATCCGAGGTTTGGTCAGGCTGGGTCGACCAACCACATTCGCAACAGCTCTAGCGAGTGCTCGGATGTTGGATAGGGACACCCCCAGGACGGAACAGTCCCAAGAAGTGGGCACGTCGTCTGGTGCCAAGAGGAAGCAGGAAGAGGAAGTGCCTGCAGCTGGACAGAAAGTCAGAAGGTCTCTGCCAGGGACTAGTGAGCGCTTAGTGGAGAAAGTCCAGCAAGAGGAGTTCTTGCCCCAGGTCACCGATGAAGAGCTCAAGGATGAGTATCCTGAGCTTTATGATGACGACGATTCTGATGATGAAGATAGCTCCTAAGGTGGGGAGTCAGCATACCCCTCGCTCAAGGTTAGTAATCCCTTCTCTTCTTAAATCTATATCCTTTGGCTCTGAAATCTCTTTTCTTATGATTTATGCTTGTCTTGTGCATATTTGTTCGTTGTTGTGAGTATGCATGGATCATTCCTTCGTTTTTGTGGCATTGCTGTCGAGCAAATCTTGAAGCTAGAATTGCTAGGGTGTCCTTTTTCTTGGTGTCTTGTTATTTAACCCCCCTTATATAGGCTAGCTTCAAGGGAAAAAGATCTTCCTAAAATAACTTTGCATCTCTTATGGGTGCTTCGTGGTGTTTAGATTCTTTGTCCCTTAGTTAGTTTCAAGGTTCTGTTGGTGTCGCCTAGTTTCTAAGGAGTTGAGAAATTCCTTTGAGTTGAGCAGGAGGTTTCCTTAGAGTTGTTTGTATCCAACCTCTCTAGCTGAAGGTCAAGGAGTAGCTTTCCAAGGATGCCTAAGGATCCAAGTTTGAGCGTTGCAAGTTGCTGTTATGTTTTCGGACTCATGGATAGCCTTGTCGCTGCTTGGATCTCATGAATCAAGTCTCGAGGTTTTGGACTTGCTTGTGTCGAAGCTCTCAATGGTGTTGGTTTCTCAAACCTATAGTTAGAGCATTTCCCTCACGCAGTAAGACCTCGATCCAAGCCAAGGTGATATTGAAAATCAGTATCAAGTCCGGACTACAGCGTCAGTTATCGTCACGACAAGTTACCTTGGTATGCAGTTATAAGGAAGTGCCAACGGTGGTGTTAGCGTCATCTCGTAGCCATTCTTGAAGGATGGTTTGAAAAGGGGAGTTGGCGCAGCAGAAGCCGTTTCGGAGTTTTGTTCCTTCCCTCAGTGATGCCTCTTTGAAGTTGGGGTTGAAACTTACCAACTAAGTGAGTTTAAGTTGGTGAAGTTGTTGGTGAAGCCTTCCGTTGGACCGGGATGAGAATTCTTGAGGTCATTGAAGGTGGGTTGTGGTTGTGTCAGGCTTGAAGGTTTAAGCTGACGTTAGCAGCTTGTGTTCCTTCAAGTGACATTGTTAAAAGCGAGCCTCATGTGTGTTGTGCTAAAGCAGATAGCTTAGCTCCAACTTTGCTAGTGAAGTTGGCTTTTTTGATACACATGGCTAAGTATCCTGTAGATCGTGCAAGACCCGAGTTCGGATTGGATTTTGTCCGACCTTTTGAGCTGTTTATGCACTTGGTCAAGTTGCCTGTAAGCGAGCTTTGCATCAAGTGATGTGTGTTCAGCACAACTCGTCTCTAGAGTTGTTGTTCGGGATGTACATCGATTGTTCCTCTTGTTCCTTAGTTAAGCTTTGGGATTCTAGAGGGAAGTAGCTTGATGAGCAACAAGCCTCTGGTATTAAGTGCCTTGATGAGTAAGTTTTGGAGTCAAGGCCAGCCATCCAACGTGGTTAGATGTGCAACTTTCGAGGACGAAAGTTCTTAAGGTGGGGAGATTGTAACACCCCGCGTTTTCAGGTACGAATAACTCTGTTAAATGGTGATTTAATTCGGAGTTTACTTCCTGTTCGGCTGCTTAAAGTTATTTATTTTTGGTGGCTGTTTGGAGTGGGTTAATTTTATTTAAGCCAAGAAATTCTTTTTCTTTCGAGAATTAAATTTTAAATTTGGCCTAAATCCTTATAGCTAATCTAAGATTTGATTGGGTTTTTTTTTGGAGACCTTAATTGAGTCTTTAAATATGAGGCTAAGGTTATATTTTAATTCAAGTTTTAAGAAAAAAAAAGAAGCAAGAAAACCCTAGGAATAAACTCTCTTTTCCCTTCCTTTTCTTGGTCAGCCGCCGCCCCCCTTCCGTGAAGCTCCAGCGCCGGCCAACCTCCCCCAGCCGCAGTCGAGCTCGCCGCCGCTGCCGCCTGTGCGCGTCGCACTGCCGCCGTCAAGCCTAAACCGTGGAGTTGTCGTCGCTTCGCGAAGCCTTCATCCCTCCCTCTCCGCGCGCGTCTCTCTCTCCGCGCGCGTCTCTCTCTCTCTCTCTTCCGTGGGTTTTGTTTGCGCTGTCCGCCTCTCCTCTAGCGTGTGTTGCAGCCGCCGACACCCGAGCCGCCACCGTCTAAGTCGCCGGCCGTCGTAGCCGAGCGCCGCCGCCGCGTGGGTCTTATTCTCCGCGCGTTTCTGTCCGTTGGTTCATCAGATCCGTGGCTTCTTTTCTCCTTTCTCTGCGTTTCAGCCTTTAAAGCTCGTGGGTAGCAGTTCGGGGTCCCGTCATTCGCGATTTCGCTTCTGTCCAGTGGTGTTCGACCCCGTTTTGGCTCATGGCGACGTCGTTCAGCGTTTTCGAATTGAGTGTATTTGATCGCTGTCCAGCAACGTCTTGGGCTTGAAACTAGTGTTCGGTAAATCCCTTTGCTTTCTATTCCCTTATTTAATTCTCTTGCGTGCTCTAGGTCAAATTCCTAACCTTTTGAGAGCCATTGATTGTAATTCAGGCTCATTCGAGCACTTTCGATCAAGACCCAATCCCGTAAGGGGTGAGTTGGTATTAGAGCATTCGAGTTGGGCCTTAAGAGTTGGTTTCAGGAAGCTTTAGTGTGGTTTAGGAGCGCTTTAGGAAGTTCGGTAAGTAGTTCTTACTTGATGTTGTCTGTTTGACTGTGTGATGCATGCTGAGTGTTTTCTCGCTCTAAAACTATTCTCGTGATTACTATTTCTCTGAATATATGTATATATATATGATATCGTTGGGAAGCATGACTATTGTTGTGTGTTGATTGAATGTAAGCATGTTGGTTTTGTTTTGCATTTGTGAGTTAAGCATGAGTTGAGAGCATGTGGTTGCACGTTTAATGCTTAGTGGGCATGATGCATGAGTCTAGAAGCATGTTGCAGGGCAAATGCATTCTAGATAGATGTGAGATAGAGGTCAGGGACCTAAAGTGTGAAAGAAAGGAAAGTTGGGTGAGTGTCAGTGCACCTCGGGTACAAATGGTCGAGGGGTGGCACGTCACCATTGGTTTAAGAGGAGCATCGAGACCTTGGGTACAAATGGTCAAGGGTCGGTGTGATGAGTCTAGAAAGCAAGTGTTGGGCGCCTGGGGAAGGGCCAATACTTTGCTAAGTCATCGGTGCGCCTTGGGTACAAATGGTCAAGGGTCGAACGCCGAGCTCCGTAGAGAGCATTGTGGCCCTGGGTACAAATGGTCAGGGGACAGTGCGACTCGAAGGATCAGTCTTGGAGAGCCATGTGAGGGCTAAATATGAGCGTTGAGTGAGCTCGTGGAGCTTGAGTGGTTAGCAAGATGCATAGAGAGATGCATGAGTCATGGCTCGCTTTAGTAGTTTCTAAGCATGTCGTTGTGTTTATCGCTTTAAGAAGCATGATGTTTGCGCATGAAAAGCATGTTGTTTGTTGTTTGTTGTTTGTTGTTTGATGGCTTCTCAGGTAGGGGCTGCTTACCAGTACCTTAGTGTACTGACCCCCTCCCTTCTCTCCCCCCAACTACCAGATTTTGCAGGTTATGAGGACTGCGTGGACCATGGTGATGCGGAGGAGGCATATGAGGAAGGGCCCTAG

mRNA sequence

ATGAGTTCCAGTAGCAGTCAAGGTAGTGGACGTTCTGGCCCTCCAGACGTTCCCGAGATAGCTCCTAAGGTGGGGAGTCAGCATACCCCTCGCTCAAGGTTTAAGCTGACGTTAGCAGCTTGTGTTCCTTCAAGTGACATTGTTAAAAGCGAGCCTCATGTGTGTTGTGCTAAAGCAGATAGCTTAGCTCCAACTTTGCTAGTGAAGTTGGCTTTTTTGATACACATGGCTAAGTATCCTGTAGATCGTGCAAGACCCGAGTTCGGATTGGATTTTGTCCGACCTTTTGAGCTGTTTATGCACTTGGTCAAGTTGCCTCCTTTAAAGCTCGTGGGTAGCAGTTCGGGGTCCCGTCATTCGCGATTTCGCTTCTGTCCAGTGGTGTTCGACCCCGTTTTGGCTCATGGCGACGTCGTTCAGCGTTTTCGAATTGAGTGTCAAATTCCTAACCTTTTGAGAGCCATTGATTGTAATTCAGGCTCATTCGAGCACTTTCGATCAAGACCCAATCCCGTAAGGGTGGGCATGATGCATGAGTCTAGAAGCATGTTGCAGGGCAAATGCATTCTAGATAGATGTGAGATAGAGGTCAGGGACCTAAAGTGTGAAAGAAAGGAAAGTTGGGTGAGTGTCAGTGCACCTCGGGTACAAATGGTCGAGGGGTGGCACGTCACCATTGGTTTAAGAGGAGCATCGAGACCTTGGGTACAAATGGTCAAGGGTCGGTGTGATGAGTCTAGAAAGCAAGTGTTGGGCGCCTGGGGAAGGGCCAATACTTTGCTAAGTCATCGGTGCGCCTTGGGTACAAATGGTCAAGGGTCGAACGCCGAGCTCCGTAGAGAGCATTGTGGCCCTGGGTACAAATGGTCAGGGGACAGTGCGACTCGAAGGATCAGTCTTGGAGAGCCATGGGCTGCTTACCAGTACCTTAGTGTACTGACCCCCTCCCTTCTCTCCCCCCAACTACCAGATTTTGCAGGTTATGAGGACTGCGTGGACCATGGTGATGCGGAGGAGGCATATGAGGAAGGGCCCTAG

Coding sequence (CDS)

ATGAGTTCCAGTAGCAGTCAAGGTAGTGGACGTTCTGGCCCTCCAGACGTTCCCGAGATAGCTCCTAAGGTGGGGAGTCAGCATACCCCTCGCTCAAGGTTTAAGCTGACGTTAGCAGCTTGTGTTCCTTCAAGTGACATTGTTAAAAGCGAGCCTCATGTGTGTTGTGCTAAAGCAGATAGCTTAGCTCCAACTTTGCTAGTGAAGTTGGCTTTTTTGATACACATGGCTAAGTATCCTGTAGATCGTGCAAGACCCGAGTTCGGATTGGATTTTGTCCGACCTTTTGAGCTGTTTATGCACTTGGTCAAGTTGCCTCCTTTAAAGCTCGTGGGTAGCAGTTCGGGGTCCCGTCATTCGCGATTTCGCTTCTGTCCAGTGGTGTTCGACCCCGTTTTGGCTCATGGCGACGTCGTTCAGCGTTTTCGAATTGAGTGTCAAATTCCTAACCTTTTGAGAGCCATTGATTGTAATTCAGGCTCATTCGAGCACTTTCGATCAAGACCCAATCCCGTAAGGGTGGGCATGATGCATGAGTCTAGAAGCATGTTGCAGGGCAAATGCATTCTAGATAGATGTGAGATAGAGGTCAGGGACCTAAAGTGTGAAAGAAAGGAAAGTTGGGTGAGTGTCAGTGCACCTCGGGTACAAATGGTCGAGGGGTGGCACGTCACCATTGGTTTAAGAGGAGCATCGAGACCTTGGGTACAAATGGTCAAGGGTCGGTGTGATGAGTCTAGAAAGCAAGTGTTGGGCGCCTGGGGAAGGGCCAATACTTTGCTAAGTCATCGGTGCGCCTTGGGTACAAATGGTCAAGGGTCGAACGCCGAGCTCCGTAGAGAGCATTGTGGCCCTGGGTACAAATGGTCAGGGGACAGTGCGACTCGAAGGATCAGTCTTGGAGAGCCATGGGCTGCTTACCAGTACCTTAGTGTACTGACCCCCTCCCTTCTCTCCCCCCAACTACCAGATTTTGCAGGTTATGAGGACTGCGTGGACCATGGTGATGCGGAGGAGGCATATGAGGAAGGGCCCTAG

Protein sequence

MSSSSSQGSGRSGPPDVPEIAPKVGSQHTPRSRFKLTLAACVPSSDIVKSEPHVCCAKADSLAPTLLVKLAFLIHMAKYPVDRARPEFGLDFVRPFELFMHLVKLPPLKLVGSSSGSRHSRFRFCPVVFDPVLAHGDVVQRFRIECQIPNLLRAIDCNSGSFEHFRSRPNPVRVGMMHESRSMLQGKCILDRCEIEVRDLKCERKESWVSVSAPRVQMVEGWHVTIGLRGASRPWVQMVKGRCDESRKQVLGAWGRANTLLSHRCALGTNGQGSNAELRREHCGPGYKWSGDSATRRISLGEPWAAYQYLSVLTPSLLSPQLPDFAGYEDCVDHGDAEEAYEEGP

Homology

[Close]

BLAST of Spg004543 vs. NCBI nr
Match: KAG6601663.1 (hypothetical protein SDJN03_06896, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.4 bits (163), Expect = 2.8e-07
Identity = 42/96 (43.75%), Postives = 58/96 (60.42%), Query Frame = 0


Query: 159 SGSFEHFRSRPNPV-RVGMMHESRSMLQGKCILDRCEIEVRDLKCERKESWVSVSAPRVQ 218
           S SFEH  ++   +  +  +   R+ L+  C    CE +VR L    KES V +  PRV+
Sbjct: 150 SDSFEHISAKTQALFDLDFIRSVRTKLRAFCC--SCEKKVRVLCAFVKESRVHIGVPRVK 209

Query: 219 MVEGWHVTIGLRGASRPWVQMVKGRCDESRKQVLGA 254
           +VEG ++ IGLRGASRPWV+MVKG   ES +  +GA
Sbjct: 210 IVEGLYLIIGLRGASRPWVKMVKGLW-ESTETSIGA 242

The following BLAST results are available for this feature:

BLAST of Spg004543 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601663.1	2.8e-07	43.75	hypothetical protein SDJN03_06896, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Spg004543 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg004543 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg004543 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg004543.1	Spg004543.1	mRNA