Spg004478 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg004478
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold9: 13285251 .. 13286829 (+)
RNA-Seq Expression	Spg004478
Synteny	Spg004478

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAAAACGAGAGGGAGAAAAGAAAGGGATACTGAGGAAGAAGAAGTGCCGATTACACCCGAGGCACCAAAGACGAGAACGAAAAGAAGGAAGACACCAGAAGAAAGAGAGGCTAAGAGACGAAGATGGCAACAACGAACTGAGGTTGCGGAAGTAGTACAGAAAGTGGTCGAAGACATTGGGGAAGAAGCGGTTAAGGAGGAACAACCAAAAGACCTTGAAGGAAAGAAAGATTCTGAACAAGAAGAATAGACAGTTGAAAATCCGCAAGAGGGACAAGAAAAGCAAGCAGAGGATGTGCAAGGACAAGGTAATGATGAGGAACAGTAGACTCAAGAAGTTGTGCTGGAGATTCCGCGTCGTTGTCGCTGCAAGCAAAAGGCGGGGCGAGTCAAGGTAGTTAGAGTCGACACTCCATCTCCGTCGACGACAGAATTTGAGAAAGAAAATACTGGAAAAGAGGATCAAGAGAAAGAAGAAACTGAAGAGAAGGCTAAAGAAGAAGCCCTGACGAAGCAACAAGAAGACAAGGGCAAAGGGGTTGCTGAAGCGCCGACAGAGACAGAAGAGACTGGCGTTGAGGAATCGAGTCTACCGTATGCGCGCATCATTAACGATCTTGCCAGAGCAAAATATCTTGAAATGCTGAAGAGGGACTTCTTGTTTGAAAGGGGATTCAGTGATGACTTGCCTCATTTCCTACGTGCTGGTATTACAAACCACGGATTGGATTAGTTTTTCGCGAAGCCAGAATCGGTGAATTCAAATATTGTTTGTGAATTCTACGTGAACATAGATGATCAGGAGGGATTCCAAGCCATGGTTCGTGGGGTAGCTGTCGATTGAAGCCCAAGAGCGATAAATTCTCTCTTCAACCTCCAGGATTTTCCACATGCCGGATTTAATGAGATGGTGGTGGCACCATCTAATGATCAATTGAACACGACTGTCAGAGAGGTTGGTATTGACGGGGCCCAGTGGAGGTTGTCAAAAACAGAGAAACGCACATATATTCCAAGCAGCCTATTTGAAGAGTGAGGCTAATATATGGTTGGACTTCATCAAATTGCGTCTACTCCCGACAACTCATGATTCGACAGTATCCCGGGATAGAGTGCTTCTGGTGTTTGCCATTATGAGATCCTTGAGTATAGATGTTGGTAAGATAATCTCTAGTGAAATCTATAATTGCTGGCGTAAGAAGGTGGGAAAACTATTCTTCCCAAACACGATTACCATGTTGTGAAGCAGGGCAGGAGTGCCCACGAGTCCGGAGAATGTTATTCTACTTGATAAGGGGATTATAGACACGCCCAATTTGGCTCGGCTTCAGTGCACGCAGGAGGCACGCCAAGGTGGGCTGGTATGCGACATCCATCAAATTCTAGAACAACTTCAACTATCGACTAGTAGGCAAGAGTATGCTGAGAGGCAAGCTCAGACCTACTGGACCAATGCTAAAAGGAGGGTTGCCACCCTACGGAACGCCTTGCAACCCAATTTTTCAAAACCATATCAGGCCTTCCCAATTTCCCCGATGACTTTTTTAATCCCTGGATTCCGCCGCCGCCATTAG

mRNA sequence

ATGGCTAAAACGAGAGGGAGAAAAGAAAGGGATACTGAGGAAGAAGAAGTGCCGATTACACCCGAGGCACCAAAGACGAGAACGAAAAGAAGGAAGACACCAGAAGAAAGAGAGGCTAAGAGACGAAGATGGCAACAACGAACTGAGGTTGCGGAAGTAGTACAGAAAGTGGTCGAAGACATTGGGGAAGAAGCGACTCAAGAAGTTGTGCTGGAGATTCCGCGTCGTTGTCGCTGCAAGCAAAAGGCGGGGCGAGTCAAGGTAGTTAGAGTCGACACTCCATCTCCGTCGACGACAGAATTTGAGAAAGAAAATACTGGAAAAGAGGATCAAGAGAAAGAAGAAACTGAAGAGAAGGCTAAAGAAGAAGCCCTGACGAAGCAACAAGAAGACAAGGGCAAAGGGGTTGCTGAAGCGCCGACAGAGACAGAAGAGACTGGCGTTGAGGAATCGAGTCTACCGTATGCGCGCATCATTAACGATCTTGCCAGAGCAAAATATCTTGAAATGCTGAAGAGGGACTTCTTGTTTGAAAGGGGATTCAGTGATGACTTGCCTCATTTCCTACGTGCTGTATCCCGGGATAGAGTGCTTCTGGTGTTTGCCATTATGAGATCCTTGAGTATAGATGTTGGAGTGCCCACGAGTCCGGAGAATGTTATTCTACTTGATAAGGGGATTATAGACACGCCCAATTTGGCTCGGCTTCAGTGCACGCAGGAGGCACGCCAAGGTGGGCTGGTATGCGACATCCATCAAATTCTAGAACAACTTCAACTATCGACTAGTAGGCAAGAGTATGCTGAGAGGCAAGCTCAGACCTACTGGACCAATGCTAAAAGGAGGGTTGCCACCCTACGGAACGCCTTGCAACCCAATTTTTCAAAACCATATCAGGCCTTCCCAATTTCCCCGATGACTTTTTTAATCCCTGGATTCCGCCGCCGCCATTAG

Coding sequence (CDS)

ATGGCTAAAACGAGAGGGAGAAAAGAAAGGGATACTGAGGAAGAAGAAGTGCCGATTACACCCGAGGCACCAAAGACGAGAACGAAAAGAAGGAAGACACCAGAAGAAAGAGAGGCTAAGAGACGAAGATGGCAACAACGAACTGAGGTTGCGGAAGTAGTACAGAAAGTGGTCGAAGACATTGGGGAAGAAGCGACTCAAGAAGTTGTGCTGGAGATTCCGCGTCGTTGTCGCTGCAAGCAAAAGGCGGGGCGAGTCAAGGTAGTTAGAGTCGACACTCCATCTCCGTCGACGACAGAATTTGAGAAAGAAAATACTGGAAAAGAGGATCAAGAGAAAGAAGAAACTGAAGAGAAGGCTAAAGAAGAAGCCCTGACGAAGCAACAAGAAGACAAGGGCAAAGGGGTTGCTGAAGCGCCGACAGAGACAGAAGAGACTGGCGTTGAGGAATCGAGTCTACCGTATGCGCGCATCATTAACGATCTTGCCAGAGCAAAATATCTTGAAATGCTGAAGAGGGACTTCTTGTTTGAAAGGGGATTCAGTGATGACTTGCCTCATTTCCTACGTGCTGTATCCCGGGATAGAGTGCTTCTGGTGTTTGCCATTATGAGATCCTTGAGTATAGATGTTGGAGTGCCCACGAGTCCGGAGAATGTTATTCTACTTGATAAGGGGATTATAGACACGCCCAATTTGGCTCGGCTTCAGTGCACGCAGGAGGCACGCCAAGGTGGGCTGGTATGCGACATCCATCAAATTCTAGAACAACTTCAACTATCGACTAGTAGGCAAGAGTATGCTGAGAGGCAAGCTCAGACCTACTGGACCAATGCTAAAAGGAGGGTTGCCACCCTACGGAACGCCTTGCAACCCAATTTTTCAAAACCATATCAGGCCTTCCCAATTTCCCCGATGACTTTTTTAATCCCTGGATTCCGCCGCCGCCATTAG

Protein sequence

MAKTRGRKERDTEEEEVPITPEAPKTRTKRRKTPEEREAKRRRWQQRTEVAEVVQKVVEDIGEEATQEVVLEIPRRCRCKQKAGRVKVVRVDTPSPSTTEFEKENTGKEDQEKEETEEKAKEEALTKQQEDKGKGVAEAPTETEETGVEESSLPYARIINDLARAKYLEMLKRDFLFERGFSDDLPHFLRAVSRDRVLLVFAIMRSLSIDVGVPTSPENVILLDKGIIDTPNLARLQCTQEARQGGLVCDIHQILEQLQLSTSRQEYAERQAQTYWTNAKRRVATLRNALQPNFSKPYQAFPISPMTFLIPGFRRRH

Homology

The following BLAST results are available for this feature:

BLAST of Spg004478 vs.


Match Name	E-value	Identity	Description

BLAST of Spg004478 vs.


Match Name	E-value	Identity	Description

BLAST of Spg004478 vs.


Match Name	E-value	Identity	Description

BLAST of Spg004478 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 108..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..150
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg004478.1	Spg004478.1	mRNA