Spg004306 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg004306
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Locationscaffold5: 18637693 .. 18647460 (+)
RNA-Seq ExpressionSpg004306
SyntenySpg004306
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGGGAAGTAGGTTTAATTTCAGGCGAAAAGTAGAGGGTAGCAGAAAACGCAAATTTGGAATAGCTGTGTTCGGGGGGGTTTCTGGACAAATCCATAGGGCATCTCATTTTCATTTCTTCAAGTAAGTTGTAGAGGGTTCCCAAATGAAGAATTTGATATAAATTACATTAATTTGGTCAAGTATTGAGAAAGTTATGAGTGTTTGAAATTAGGGTATTGAGCCTGGAAAATTCTAGGAAAAGTGTGAAATGTGATTTTATTTCTAAAGTTTAGAATTCATGAGCATAGAAAGACAAGATTATTTATGGTTCTGATGCTCGGTTTTGGTTTGTTTGACAGGCCAAGAGAAAATAGGCCAAGTCTACAGGCCAGAGAACTAGCCAAAGTTGTGAGTGACAAAACAAATTCTGAAAATGATTTCTAAACTGTTATTTATGATTAAATGTTTTACATGCTTGAATCTGAACTTACGAATAATACATGATTTCTATGAATGGTTTCAAGCATAAGTTTCAAGCTTAGATTTTCTAATGTTCTGAAAAGTAGTTCAAACGATATCATTTTAAACAAAGTATGTATTAATGAGTATTGTTTAAAGATTTTCTGTTTTCCACGAACAAGCTGAGTAAGCTTGAGTTTTACGAAAGATAAAGATAAGCAGGCATGTTTTAATGTTTGCATGTGATTTTCTGAGACTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGTTGTATCGTACCGTGTGCACACAGGTTATATTTCGTTGTTGACGTTGAGTGTATTCTGTGACAACGATGCTGTCGTGAGTGTTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCAGGCCCCACTACATCGTAGAGCAAACGTTGGTTGTACTGGGTGTGCCCTACACAACATAGATTAGTCATGCTAGTTAAAATGTTTAATATACTTGATATGTCTTGCTAGATTTTAATGACATACTTGTGTATTTGAGAAAGCTGTTATCATTACACGTTTATATTTCACACTTTGATGAAACAGATTTATATATTTGCAGATTAACAGTTTTTTAATTTAGTCACTCACTGGGCGTCATAGCTCACCCTTTCAAAATGTTTTCTCACTTTCCAGGTAGAGATCGAGCTCTCGGTGCCTGATAAACTGCTATAGTCTGCTAAAAGTTCCCATATCAATTTCCAGTATGTGGGTGGAGTTGTACATCGAGTCTGTTTATATTGTAAATATCTTGTAAGGATTGGATAGTTTGCGGTTTGTGTAAGCTCTAGATGTTGTGGTTGTGAAAACCCTAGTTGAATATGTTTTTGGTTGTGATGTCTCTATCAGGTTTATTTTCCAAAGTGAGTTAAGTCGGGGTTGCGCTTCTTGTATGTCTAAAGGATATCAAGGTTTCACTGTGTTGTGTTGCATGCAAAGTATTCCATATCTAAGATTAGCATGTTTATCAGGTTCAATAGTTTAGCAGGGTCAACAGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTCCCGGACTAAGCTAGCAGGTAGTTCGGGAGGGGGTGTGACAAGAAGTGTAGCGGAAGATCCGCACTCACACCTTAAATCATTTCTTGATATATGCGATGAGTTTATTATTCCCAGAGTAACCCCAGAGCAGTTGCAAGTGATTTTATTCCCCAATTCTCTGAGAGATGCTGCTAATGTTTGGTTGAATCAATAGCCAGCAAACTCTATAGCTACGTGGAATGATTTGGCTGAAAAGTTCTTGGAAAAATATTTTCCCCCAACAGCCAATTCTAGGCTACGGAAGGAGATCATGACATTTGCTCAAATGGAGGATGAGACACTCAGTGATGCATGGGAACGTTTTAAAAGTTTGTTGCAAAGATGCCCCCATCATGGATTGCCCCACTGTATCCAGTTGGAGACATTCTACGTTGGACTGAACAAAAACTCCCAAATCCATGTTCACTCATCTACCAACGAAAGCACCCAGTGAAGACTAGTTCAGGTTTCTTTGAAGTGGATCCCATGACTGCGGTGAACGCTAAAATTGATGCGTTGACCACAAGGATGGATGCATTAATAGCCAACACAACACCCCTCATAGCACAGCTCGTTGCGGTGGAATGCGGTATTTGTGGAGAAGGCCACACGCATGACCAGTGCCATTCCAATCCAGAGTCTGTGTTCTATGTAGGACTGCAGGGGAATGCGCGGAATAATCCATTTTCAAACACCTACAACCCTTGTTGGGGGAACCACCCTAATTTCTCGTCGAGTGGAAACACTGGCTCATCCAAACAGACACAGCAAGGTAATACAAACTCTGGCCCTAGACTGCTTAACGCTAACAATGAGCACGTGGCACAAGGAAATTTCTAGTGCAACAATAACAAAAGCGGTGGAGACTCGGGCGCATCATCATCTAATTCTCTGGAAAACATGATGAAGAATTTTATGCAAAGCCAGAAGGAGTATATGGCAAAGAATGATGTGGTCGTCCAGAGTCAAGCTGCTTCCCTAAGAAACTTGCAAGTTCAAGTAGGACAACTTGCGTCAGAATTGAAAAATAGACCTGTGGAGACTTTGCCTAGTAATATAGAGGCCCCCAAGGGAAAAGAGCAATGCCATACATTGACTCTGTGTAGTGATAAGCAACTTCAAAGTGGAGATGCTACGCCAGTGCAAGAAAAAGAAAAAGAAAAAGCAAAGGAACCTGATGCATACAACCCACCAGTTCCCTTTCCACAAAGGCTGCACAAGAAAAATGATGAAGTGCAATTTAAGAAATTTCTAAGTGTGCTGCGTGAGATTCACATCAATATCCCTTTGGTGGAGGTGCTAGAAAAGATGTCGAGCTACACGAAGTTTCTAAAAGATATCCTCTCAAACAAGAGACCATGGAAGGAATTTGAGACAGTTGCACTAACAAACGAGTCTAGCGCAATCTTGAATAACAAAATCCCCCCAAAATTAAAGGACACAGGAAGCTTCACCATTCCATGTTCCATTGGAGGAATTGACATGGGAAGAGCCCTATGTGACCTCAGCGCAAGCATAAATTTGGTGCCCTTATCAGTGTTCAAACGCCTGGGTATTGGAGAAGCGCATGCAATGACAATTACCCTCCAGCTCTTAGATAGGTCGATGGCGCATCCAAAAGGAAGAATAGAAGATTTATTGGTAAGAGTAGATAAATTTATTTTTCCAGCTAACTTTATTATTCTTGATTATGAAGTAGACAGGGATGTTCCAATATCTTGGAACGATCATTCTTGACAACTGGACAAACACTGATAGACGTGCAAAAAGGGGAGCTCACCATGCGAGTTAATGATCAAGAAGTGGTGTTCAATGTGTTTAACGCAATGAAATTCTCTGCCGAATCCAAAGATAGTGAGACTGTAGCACGCATAGAAATTTGCTCACCAATGGAGATATTCAGGATGGATGCATTAGAAGTAGCATGGAAGGCGGAAGAAGAAGATCAAGTCGCATGTAAAGAAGAGGCATGTTGCATGTTCGCTAAGACCACCACAGAAATTCATGCGCTAGATCTCTCGAACAGGGAGTTCACTTTACCCTCCGTTATATCTCCAACTGCGTTAGAGTTGAAACCTCTCCCAGCGCATCTAAAATACAAACCCTGCGATGATGGAGGTTTTGCAAAAAGTAGTCATCAAATGGATCGACGCAGAAGTCATCTACCTCATCGCAAATAGTAGATGGGTCAGTCCAGTTCAATGCGTTCCAATGAAATGAGGAATGACAGTGGTCACCAACGCAAAGAATGAGTTCATTCCATCGCGGACCGTCACGGGATGGCGAGTGTGCATGGACTATCACAAGCTCAACGCAATAACAAAGAAGGATCATTTTCCTTTGCCATTCACTTGGATACATCCTTAGCGATACATTCAACAATGCATGATGGCTATTTTCTCTGACTTGCTAGAAAAATTAGTTGAAGTTTTCATGGACGATTTTTCTGTCTATGGAAATTCATATGCAGATTGTCTGATGCATCGAGAGCATGTCCTGGTGTGATGCAAAGAAACAAAATTGGTGCTTAATTGGGAAAAATGTCATTTCATGGTGGAAGAAGGAATTGTGTTGGGTCATCGCATCTCGAAAGATGGCATAGCAGTTGATAAGGCAAAATTTGATGTGATTGACAAGCTGCCATCGCCTACATCTGTTATGGGAATTCGCAGTTTTCTAGGGCATGCAGGATTCTATTGAAGGTGTTCATATAACACATGCGGAAGCAATTTTAGGATCGGAGGCACTTAACTACATCAATTTTAGAAAATGAAAACATGCTGTCCAAATACCGTTAACAGAGAGCAGAATTTGTACCAACCTTTTGGAGACCGATTCAGCAACTCCTTTTGATTCCTTTGATCACGAACGGTGTGTGGACCACCTCTAGTGTCTTCCCCTCTATCCTTCAGCCTTAGAACGACTTGTGGGAGTCTATGGTGATAGGGATTGGAAGGGATATGCTTCAACACTCTAAGCTTTTAGAGAGAATTGAGAGAGTGAGGTTGAGAGTGAATTTTGGTACCATAACATTACTCAAAAAATTCCATACTACTCCATCTTCTAATCCCCTATTTATAGAGGATTTTCATGCATCTTAGATTCATCAATGTAAGACACATGGAGAGGAGAATGTCCATAGTGGATTCTAGGTGTGCAATGGAGAATACATCCATCTTTGCATGATTGAGGTGTTATTCCACTTTCTTCATCCATGCAAGAGTGGATTTAATTGTGTACTTCCACTATCTCCATCCATGCAAGAGTGAAATTCTACTCTTGGATTTGATTTAAAATGTAATTCTTAATTGCCTTTCAAGTTACAATTTAATTGAACAATTTCAATTAATCATATGACATTAATCAAATTGATTCATATCACCTAATTAAATCCACTAATCTTGAATTTCCATAAATTCAAGATTGAAATCTCTATCTCAAATTTTAATTAAAAACAATTCATAATCATTTTTAAATTAAAACAATAATTATTTAAACAATTTAATCAATTATGTAATATTAATTTAATATCATATATCAAATTAATACTATGCACCCAATATGAATCCCTATTCATATATATTGTATTTAAATCATATTTAAATACTTTACTCTCTCAATTAATAGTTTAATTCATAATTAAACTATTTTGTCGATAATATCGTATATAGTCGACACTAATTCCCTAAACCGATTTTGTACGATTCAAACTTTCCTATCACTAAGTTCTAAGGTATAATCCGTATAAGCTAGCAGGGGAACCTAATGGACCTACAGATCATGGGCTCCAACGATCCGAGGTTAACCGGCTAATCTCATTAACCTAGCTAACCAACATTCGTTAACTACCGGGACACTCCACTATAGCCCTGTAGTTGCACTCCCCTCACTGTAGATATATTTCTGTCCACCTGATATAACAATCATTAGTAAGTCGATCCTTCACAGGTTGTTCGTAACCATAGTTGGGTCAAATGTCCTTTTTACCCCTATAGTACTTCTTGTTCCTTAAGTCCCACTGATCCTTCTTTTCAAAAAAAAAAAAAAGTCCCACTGATCCTCTAATGAACAATTGGTTTATGGTCCAACCAACAAACCAAGTCCCTCTCGGGCCAATGAGAGGGTGGGATCCCTTTGTTAAAGCCCCAAATACAGCACTTAAGGGAACAACCTCTCTACTATCCCTAATTCGGGTAGGAGCAAATTCTTTCTTGCAGAACTATGTCCCCAGCTATCTACCCGTTCCTATCCCTGAAATGGGAGGCTTATTGAGTCGGCGATGCTCAACCACTCTCACCCATGCAGATCTAAGGATAAGTCAGAATATACAGGAGTTCATAGTTAGCTCAGGATTAAGATGAAGTTACCTAGGTCATCACATGAAATAGTCAGTCTTGTCAGTAAACGGCGTTATAAAGGAAGAGTGACTTATTTCTCGGTCCTGGTCTGTTGCAAACTCATTGTATAGGACGCCCCCACTCGCATGTCTCTACATGGACGATTTAGGATCACATCGTCTGTACTATCTACAAAGTGGGCCACGTCTCATAGTGTCCCCAAGATAAGGTACCCAGCCCTATCCCTATAGTATAGACCGTTTTGGCTATTACTCGAGCCTGATCCACTTTTATGTCTCTACATAAAGCTCAAGTGTTCATCCTATAGCCAGAGATCTTAGTTTATTGGATTTGGGTTATTTAACGTTCAATTTACTTATTCATTAACGAATTTACTGAATGAATCTCGACAACGACTTTATCGATCAAGTATATAATTCGTTTAACATTAACTATCTACGAGTTTTAGGGCACCAATCCCAACAATCTCCCACTTGAACTAAAACTCTAGTTTAGTGGGATGTACTATAATCCATAACAGCAGTGGGTGAATAAATACTTGTATTAATAACAGAGTAAAAATACAATAAACTAGGGCATCTAAATACCCAATATACTAAGGCATCGATATACCGGTTACAATTCTCCTACTTGCCCTATATTATTTCCCGTACATGTCTCGCAGACCTAAACCTTCTAGATGACTCTCGAACACTTTAGTCGTGAGAGCCTTCGTGAATGGATCAGCAATGTTGTGCTCCGGTGCTATTTTCATGACGATCACGTCTCCTCGGTGCACAATCTCCCGATGAGATGGTATTTCCTTTTGATGTGCTTGCCTCTCTTATGGCTGCGAGGTTCCTTTGAGTTTGCAACTGCACCGCTATTATCACAGTATAAGGTAATAGGCAGATGCATATTTGGAATGACTTCCAAGTCATCTAGGAACTTCCTGAGCCATACTGCCTCTTTCGCTGCTTCGCAAGCGGCTACATATTCGCCCTCCATGGTCGAGTCTGCAATGCATCCTTGCTTGATGTTACGCCATACTATTGCTCCTCCATTCAGAGTGAATACTGACCCCAATGTAGATTTTCTCGAATCTTTATCGGTTTGAAAGTCAGAATGAGTGTATCCTGTAAGGATCAAATCCTTGGAACCATACACGAGCACATAGTCCCTCGTTCTCCTTAGATACTTGAGGATATTTTTAACGGCTGTCCAGTGATAGAATCCTGGATTGGATTGATATCTACTGACAATCCCTACTGCATAACAAATGTCAGGCCTTGTACACAACATGGCATACATTAGGTTTTCTACTACAGAGGCATAGGGAATTCGTCTCATCTCCTCAACTTCTTGAGGTGTCTGAGGACACTGTTCCTTACACAAATTAATTTCGTGCATGAAAGGTAATAGTCCCTTCTTGGAATTTTGCTTTTTATATCTAACCAACAATTTGTCGATATAAGACGCTTGAGACAGGGCTAGCGTTTTGTTCTTTTAGTCTCGAACAATTTCGATCCCTATAAAATATTGTGCCTCACCCAAATCTTTCATTTGGAATTGAGTTGCTAGCCATAGTTTAATGTCAGTGAGATAACCTACATCATTCCCAATGAGTAGGATATCATCCACATACAGTACTAAGAAAGCTACTGTAACCCCGAGACTTCCCTAGGATTATTTTCTCTTGTCATATATTGTTGGTTTAAGTTGTTGGGATTTACTAAGTTAAAAGAAGAAAAGAAAAGAATGGAAATAAAGAAGAAAAGAAAAGAAAAGGAAAGGAAAAGGAAAAGGAAAAACAAAAAAAAAAAAAAGAAAAGAAAGGAAGTGGGAAAGGACAGCAAACATACCACCACCGCCTAAGCCAAACTCCAGCCCATTTTTAGTCATTTTCAGCCCAATTTCTCATCATTTTCCATCCAAAGTTTCAGAGCACTTGAGAGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGAGTTCAACCTGTCAACCTCTGGTTTTTGATTCGGTTTGAGCTACCCAGAAGGAACTAAGAGGTGAGGTTTGATTTTCTTGAAAGTTAGTTCATTTTCTAACAAATTGCATGAAGGAAGCTTGAGCTAAATCGTATGAGAAGTTAATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGTAGGAGGATCTCTGGTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTTAGAAAGCGTATTCAATTTCCTACAACGTTCATGAAAAATTCGTGAGCCAAAAATGACTTTAAGTAGGTTTAATTTCAGGAGATAGATAAAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGAATTTTTTGACAAATAGGTTGGGAATCTTGTTTTTATTTCTTCAGGTAAGTTTTAGAGTGTTCGAAAATGAAGAGTTTGATGTATAGTACATTAATTGTGGTTAAGTATTGAAGAAGTTATGGGTGTTGGAAGTTAGGGTATAGAATCTGGAAAATCTAGAAAAGTAGAATGTGAAGTATGATTTTTAATTCAAGTGTTTAGAATTCATGAGCATGGAAGAATAAGACTATCTATGGTTATAATGCTCGGTTTTGGTTGTTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTGTGAGTGACAAAATGAATTTCGAAAATTGTTTCCAACGGTTGTTCATGTTTAGATGTTTTACATGCTTTTCTATGAATGATACATGGTTTTTATGAATGGTTTCAAGCTTAAGTTATGAGCTTAGATTTTCTAATGAGGTTTATAAATGAGCACGTGATTATTGAGTTTCTGAAAAATAGTTGAAACGACATCCTTTTAAGCCAAGCATGTATTAGCAAGAATTATTTAAAGATTTTCGGTTTTTTTTCCTCGAGCAAGCTGAGTAAGCTTGAGTTTTACGAAAGATAACAATAAGCAGGCGTGTTCTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTAAGATATTTAACCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTTGTGAGTGCTAGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGCACTTGATATGCCTTGCGAGACTTTTAGTGACGAACCTGCAATGTTTTTTTTAGAAAGCTTTTATCATTGCACGTTGATGTTTAACACCTTGGTTGAGCTGCTTTATACGTTTAAAGTTTTATCACGTGTTCTGTTTTTCGAATCTACAGTTTTAAATATAGTCACTCACTGGGCTTCATAGCTCATTCTTTCAAAATGTTTTCCCACTTTTCAGGTAGAGATCGAGCTCTCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCCATATTGTAAATGTTTTGTAAGGATTGGATAATTTAGTCCTAGAGGTCGTGGTTGTATAAACCCCAGTTGTACATGTTTTTGGTTGTGATATCTATATCAGGTTATTTTCCAAACCGAGTTATGTCAGGGCAGCACCTCGTGTATGTTGAAAGGTTTTCAGGGATTCCGCTGTGTTGTGTTCCACGTAGAATATCTTATATCTAA

mRNA sequence

ATGTCTAAAGGATATCAAGGGGAACCTAATGGACCTACAGATCATGGGCTCCAACGATCCGAGAGCACAGGATTTTCGAGCAAAGTAGGAGGATCTCTGGTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTTGTAGAGATCGAGCTCTCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTATTTTCCAAACCGAGTTATGTCAGGGCAGCACCTCGTGTATGTTGAAAGGTTTTCAGGGATTCCGCTGTGTTGTGTTCCACGTAGAATATCTTATATCTAA

Coding sequence (CDS)

ATGTCTAAAGGATATCAAGGGGAACCTAATGGACCTACAGATCATGGGCTCCAACGATCCGAGAGCACAGGATTTTCGAGCAAAGTAGGAGGATCTCTGGTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTTGTAGAGATCGAGCTCTCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTATTTTCCAAACCGAGTTATGTCAGGGCAGCACCTCGTGTATGTTGAAAGGTTTTCAGGGATTCCGCTGTGTTGTGTTCCACGTAGAATATCTTATATCTAA

Protein sequence

MSKGYQGEPNGPTDHGLQRSESTGFSSKVGGSLVSLVFRAFWGVQVESEALFGYIPLLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSSYFPNRVMSGQHLVYVERFSGIPLCCVPRRISYI
Homology
[Close]
BLAST of Spg004306 vs. NCBI nr
Match: KAA0051940.1 (hypothetical protein E6C27_scaffold60G003970 [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-11
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 0 

Query: 56  PLLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSSYFPNRVMSGQHLVYV 108
           PL TLSVLRDNDAVVEIEL VPDTLPTSAESS S+SSYF N+V+SG HLV V
Sbjct: 20  PLSTLSVLRDNDAVVEIELLVPDTLPTSAESSGSNSSYFTNQVISGLHLVNV 71

[Close]
BLAST of Spg004306 vs. NCBI nr
Match: TYK12219.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-11
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 0 

Query: 56  PLLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSSYFPNRVMSGQHLVYV 108
           PL TLSVLRDNDAVVEIEL VPDTLPTSAESS S+SSYF N+V+SG HLV V
Sbjct: 20  PLSTLSVLRDNDAVVEIELLVPDTLPTSAESSGSNSSYFTNQVISGLHLVNV 71

[Close]
BLAST of Spg004306 vs. NCBI nr
Match: TYK01041.1 (uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 2.5e-11
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 0 

Query: 57  LLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSSYFPNRVMSGQHLVY 107
           L TLSVLRDNDAVVEIEL VPDTLPTS ESS S+SSYF N+VMSG HLV+
Sbjct: 21  LSTLSVLRDNDAVVEIELPVPDTLPTSTESSESNSSYFTNQVMSGLHLVF 70

[Close]
BLAST of Spg004306 vs. NCBI nr
Match: KAA0064296.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK01032.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 3.3e-11
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 56  PLLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSSYFPNRVMSGQHLVY 107
           PL T SVL DNDAVVEIELSVPDTLPTSAES  S+SSYF N+VMSG HLV+
Sbjct: 574 PLSTFSVLHDNDAVVEIELSVPDTLPTSAESYGSNSSYFTNQVMSGLHLVF 624

[Close]
BLAST of Spg004306 vs. NCBI nr
Match: TYK21916.1 (hypothetical protein E5676_scaffold494G00570 [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 3.3e-11
Identity = 42/51 (82.35%), Postives = 45/51 (88.24%), Query Frame = 0 

Query: 57  LLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSSYFPNRVMSGQHLVYV 108
           L TLSVLRDNDAVVEIEL VPD LPTSAESS S+SSYF N+VMSG +LVYV
Sbjct: 116 LSTLSVLRDNDAVVEIELPVPDRLPTSAESSASNSSYFTNQVMSGLYLVYV 166

[Close]
BLAST of Spg004306 vs. ExPASy TrEMBL
Match: A0A5A7U9T8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G003970 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 5.5e-12
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 0 

Query: 56  PLLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSSYFPNRVMSGQHLVYV 108
           PL TLSVLRDNDAVVEIEL VPDTLPTSAESS S+SSYF N+V+SG HLV V
Sbjct: 20  PLSTLSVLRDNDAVVEIELLVPDTLPTSAESSGSNSSYFTNQVISGLHLVNV 71

[Close]
BLAST of Spg004306 vs. ExPASy TrEMBL
Match: A0A5D3CPH9 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00230 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 5.5e-12
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 0 

Query: 56  PLLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSSYFPNRVMSGQHLVYV 108
           PL TLSVLRDNDAVVEIEL VPDTLPTSAESS S+SSYF N+V+SG HLV V
Sbjct: 20  PLSTLSVLRDNDAVVEIELLVPDTLPTSAESSGSNSSYFTNQVISGLHLVNV 71

[Close]
BLAST of Spg004306 vs. ExPASy TrEMBL
Match: A0A5D3BMJ4 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00470 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.2e-11
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 0 

Query: 57  LLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSSYFPNRVMSGQHLVY 107
           L TLSVLRDNDAVVEIEL VPDTLPTS ESS S+SSYF N+VMSG HLV+
Sbjct: 21  LSTLSVLRDNDAVVEIELPVPDTLPTSTESSESNSSYFTNQVMSGLHLVF 70

[Close]
BLAST of Spg004306 vs. ExPASy TrEMBL
Match: A0A5A7VD33 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00370 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.6e-11
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 56  PLLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSSYFPNRVMSGQHLVY 107
           PL T SVL DNDAVVEIELSVPDTLPTSAES  S+SSYF N+VMSG HLV+
Sbjct: 574 PLSTFSVLHDNDAVVEIELSVPDTLPTSAESYGSNSSYFTNQVMSGLHLVF 624

[Close]
BLAST of Spg004306 vs. ExPASy TrEMBL
Match: A0A5D3DE96 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold494G00570 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.6e-11
Identity = 42/51 (82.35%), Postives = 45/51 (88.24%), Query Frame = 0 

Query: 57  LLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSSYFPNRVMSGQHLVYV 108
           L TLSVLRDNDAVVEIEL VPD LPTSAESS S+SSYF N+VMSG +LVYV
Sbjct: 116 LSTLSVLRDNDAVVEIELPVPDRLPTSAESSASNSSYFTNQVMSGLYLVYV 166

The following BLAST results are available for this feature:
BLAST of Spg004306 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0051940.11.1e-1182.69hypothetical protein E6C27_scaffold60G003970 [Cucumis melo var. makuwa][more]
TYK12219.11.1e-1182.69ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK01041.12.5e-1182.00uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa][more]
KAA0064296.13.3e-1180.39putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK... [more]
TYK21916.13.3e-1182.35hypothetical protein E5676_scaffold494G00570 [Cucumis melo var. makuwa][more]
BLAST of Spg004306 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg004306 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U9T85.5e-1282.69Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CPH95.5e-1282.69Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3BMJ41.2e-1182.00Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7VD331.6e-1180.39Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=... [more]
A0A5D3DE961.6e-1182.35Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Spg004306 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..27

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg004306.1Spg004306.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0016740 transferase activity