Spg004282 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg004282
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	60S ribosomal protein L27
Location	scaffold6: 7026390 .. 7026966 (+)
RNA-Seq Expression	Spg004282
Synteny	Spg004282

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAGTTCCTCAAGCAGAACAAAGCCGTCATCGTCCTTCAAGGCCGTTACGCCGGCCGGAAGGCGGTCATCATTCGCGCCTTCGACGACGGAACTCGGGATCGGGCTTATGGCCACTGCTTGGTCGCCGGAATCAAGAAGTACCCAGCCAAGGTCATCCGCAAGGACTCTTCTAAGAAGACTGCTAAGAAATCCAGAGTCAAGGCCTTCATCAAGCTCGTCAATTACAGGCATCTAATGCCCACCAGGTACACTCTCGATGTGGATCTCAAGGACGTCGTCACCGTCGATTGCTTGCAGTCAAAGGACAAGAAGGTTACGGCCGCTAAGGAGACCAAGAAGAGGTTCGAGGAGAGGTTCAAGACCGGGAAGAACAGGTGGTTTTTCACCAAGCTCAGGTTCTGAAGAGTCTTATCTAGTCTTGTTATGTTGTGGGTTTACTCTGGATTTTCAAGTAATCGGACTTCTTTTTATATAAATACAGTAGTTTATTTGATCTTACATTTTTGGTTGAACGTACTCTAGTCGTTTGGATGAGAAATTTTCTGGGTTTGTAATGCTACATTTGCCTTAG

mRNA sequence

ATGGTGAAGTTCCTCAAGCAGAACAAAGCCGTCATCGTCCTTCAAGGCCGTTACGCCGGCCGGAAGGCGGTCATCATTCGCGCCTTCGACGACGGAACTCGGGATCGGGCTTATGGCCACTGCTTGGTCGCCGGAATCAAGAAGTACCCAGCCAAGGTCATCCGCAAGGACTCTTCTAAGAAGACTGCTAAGAAATCCAGAGTCAAGGCCTTCATCAAGCTCGTCAATTACAGGCATCTAATGCCCACCAGGTACACTCTCGATGTGGATCTCAAGGACGTCGTCACCGTCGATTGCTTGCAGTCAAAGGACAAGAAGGTTACGGCCGCTAAGGAGACCAAGAAGAGGTTCGAGGAGAGGTTCAAGACCGGGAAGAACAGGTGGTTTTTCACCAAGCTCAGTCGTTTGGATGAGAAATTTTCTGGGTTTGTAATGCTACATTTGCCTTAG

Coding sequence (CDS)

ATGGTGAAGTTCCTCAAGCAGAACAAAGCCGTCATCGTCCTTCAAGGCCGTTACGCCGGCCGGAAGGCGGTCATCATTCGCGCCTTCGACGACGGAACTCGGGATCGGGCTTATGGCCACTGCTTGGTCGCCGGAATCAAGAAGTACCCAGCCAAGGTCATCCGCAAGGACTCTTCTAAGAAGACTGCTAAGAAATCCAGAGTCAAGGCCTTCATCAAGCTCGTCAATTACAGGCATCTAATGCCCACCAGGTACACTCTCGATGTGGATCTCAAGGACGTCGTCACCGTCGATTGCTTGCAGTCAAAGGACAAGAAGGTTACGGCCGCTAAGGAGACCAAGAAGAGGTTCGAGGAGAGGTTCAAGACCGGGAAGAACAGGTGGTTTTTCACCAAGCTCAGTCGTTTGGATGAGAAATTTTCTGGGTTTGTAATGCTACATTTGCCTTAG

Protein sequence

MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCLQSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLSRLDEKFSGFVMLHLP

Homology

[Close]

BLAST of Spg004282 vs. NCBI nr
Match: XP_022931548.1 (60S ribosomal protein L27-2-like [Cucurbita moschata] >XP_022942298.1 60S ribosomal protein L27-2-like [Cucurbita moschata] >XP_022983312.1 60S ribosomal protein L27-2-like [Cucurbita maxima] >XP_022985030.1 60S ribosomal protein L27-2-like [Cucurbita maxima] >XP_023521538.1 60S ribosomal protein L27-2-like [Cucurbita pepo subsp. pepo] >XP_023548326.1 60S ribosomal protein L27-2-like [Cucurbita pepo subsp. pepo] >XP_023551847.1 60S ribosomal protein L27-2-like [Cucurbita pepo subsp. pepo] >KAG6577087.1 60S ribosomal protein L27-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG6600449.1 60S ribosomal protein L27-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 255.8 bits (652), Expect = 2.4e-64
Identity = 131/133 (98.50%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK
Sbjct: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+D LQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKL 134
           FKTGKNRWFFTKL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spg004282 vs. NCBI nr
Match: XP_022931553.1 (60S ribosomal protein L27-2-like [Cucurbita moschata] >XP_023521539.1 60S ribosomal protein L27-2-like [Cucurbita pepo subsp. pepo] >XP_023553223.1 60S ribosomal protein L27-2-like [Cucurbita pepo subsp. pepo] >KAG6577086.1 60S ribosomal protein L27-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 255.4 bits (651), Expect = 3.1e-64
Identity = 130/133 (97.74%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKQNKAVI+LQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK
Sbjct: 1   MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+D LQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKL 134
           FKTGKNRWFFTKL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spg004282 vs. NCBI nr
Match: XP_022985069.1 (60S ribosomal protein L27-2-like [Cucurbita maxima])

HSP 1 Score: 254.6 bits (649), Expect = 5.3e-64
Identity = 129/133 (96.99%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKQNKAVI+LQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK
Sbjct: 1   MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFIK+VNYRHLMPTRYTLDVDLKDVVT+D LQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKIVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKL 134
           FKTGKNRWFFTKL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spg004282 vs. NCBI nr
Match: XP_022942297.1 (60S ribosomal protein L27-2 [Cucurbita moschata] >XP_023513594.1 60S ribosomal protein L27-2 [Cucurbita pepo subsp. pepo] >KAG6600450.1 60S ribosomal protein L27-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 254.2 bits (648), Expect = 6.9e-64
Identity = 130/133 (97.74%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAG+KKYP+KVIRKDSSK
Sbjct: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVD LQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKL 134
           FKTGKNRWFFTKL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spg004282 vs. NCBI nr
Match: XP_004147740.1 (60S ribosomal protein L27 [Cucumis sativus])

HSP 1 Score: 252.7 bits (644), Expect = 2.0e-63
Identity = 130/133 (97.74%), Postives = 131/133 (98.50%), Query Frame = 0


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLK NKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDS+K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVD LQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKL 134
           FKTGKNRWFFTKL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spg004282 vs. ExPASy Swiss-Prot
Match: Q8LCL3 (60S ribosomal protein L27-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27B PE=2 SV=2)

HSP 1 Score: 226.1 bits (575), Expect = 2.6e-58
Identity = 112/133 (84.21%), Postives = 124/133 (93.23%), Query Frame = 0


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKQNKAVI+LQGRYAG+KAVII++FDDGT DR YGHCLVAG+KKYP+KVIRKDS+K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D L+SKDKKVTA KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKL 134
           FKTGKNRWFFTKL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spg004282 vs. ExPASy Swiss-Prot
Match: P51419 (60S ribosomal protein L27-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27C PE=2 SV=2)

HSP 1 Score: 226.1 bits (575), Expect = 2.6e-58
Identity = 112/133 (84.21%), Postives = 123/133 (92.48%), Query Frame = 0


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKQNKAVI+LQGRYAG+KAVII++FDDG RDR YGHCLVAG+KKYP+KVIRKDS+K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D LQSKDKKV A KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKL 134
           FKTGKNRWFFTKL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spg004282 vs. ExPASy Swiss-Prot
Match: Q05462 (60S ribosomal protein L27 OS=Pisum sativum OX=3888 GN=RPL27 PE=2 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 7.7e-58
Identity = 111/133 (83.46%), Postives = 123/133 (92.48%), Query Frame = 0


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLK NKAVI+LQGRYAG+KAVI++ FDDGTR++ YGHCLVAGIKK+P+KVI+KDS+K
Sbjct: 1   MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAF+KLVNY+HLMPTRYTLDVDLKD V  D LQSKDKKVTA KETKK  EER
Sbjct: 61  KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEER 120

Query: 121 FKTGKNRWFFTKL 134
           FKTGKNRWFFTKL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spg004282 vs. ExPASy Swiss-Prot
Match: Q9SKX8 (60S ribosomal protein L27-1 OS=Arabidopsis thaliana OX=3702 GN=RPL27A PE=2 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.3e-52
Identity = 99/133 (74.44%), Postives = 119/133 (89.47%), Query Frame = 0


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVK +K  KAVI+LQGRY G+KAVI+++FDDGT ++ YGHCLVAG+KKYP+KVIRKDS+K
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK F K++NY+H+MPTRYTLD+DLK+VV+ D + SKDKKVTA KE K +FEER
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 121 FKTGKNRWFFTKL 134
           FKTGKNRWFFTKL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spg004282 vs. ExPASy Swiss-Prot
Match: P41101 (60S ribosomal protein L27 OS=Solanum tuberosum OX=4113 GN=RPL27 PE=2 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.4e-51
Identity = 106/137 (77.37%), Postives = 116/137 (84.67%), Query Frame = 0


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           M KFLK NKAVI+LQG+YAGRKAVI+RAFD+GTRDR YGHCLVAGI +YP KVIRKDS+K
Sbjct: 1   MEKFLKPNKAVILLQGKYAGRKAVIVRAFDEGTRDRPYGHCLVAGISRYPKKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDL----KDVVTVDCLQSKDKKVTAAKETKKR 120
           K  KKSRVKAFIKLVNY H+MPTRYTLD DL    KDVV  D LQ++DKKVT A+ TK R
Sbjct: 61  KAGKKSRVKAFIKLVNYNHIMPTRYTLDEDLKDVVKDVVNADVLQARDKKVT-ARRTKAR 120

Query: 121 FEERFKTGKNRWFFTKL 134
             ERFKTGKNRWFFTKL
Sbjct: 121 LAERFKTGKNRWFFTKL 136

[Close]

BLAST of Spg004282 vs. ExPASy TrEMBL
Match: A0A6J1JA75 (60S ribosomal protein L27 OS=Cucurbita maxima OX=3661 GN=LOC111483122 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.1e-64
Identity = 131/133 (98.50%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK
Sbjct: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+D LQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKL 134
           FKTGKNRWFFTKL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spg004282 vs. ExPASy TrEMBL
Match: A0A6J1EZ01 (60S ribosomal protein L27 OS=Cucurbita moschata OX=3662 GN=LOC111437692 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.1e-64
Identity = 131/133 (98.50%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK
Sbjct: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+D LQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKL 134
           FKTGKNRWFFTKL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spg004282 vs. ExPASy TrEMBL
Match: A0A6J1EZ07 (60S ribosomal protein L27 OS=Cucurbita moschata OX=3662 GN=LOC111437697 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.5e-64
Identity = 130/133 (97.74%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKQNKAVI+LQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK
Sbjct: 1   MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+D LQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKL 134
           FKTGKNRWFFTKL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spg004282 vs. ExPASy TrEMBL
Match: A0A6J1JC92 (60S ribosomal protein L27 OS=Cucurbita maxima OX=3661 GN=LOC111483151 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.6e-64
Identity = 129/133 (96.99%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKQNKAVI+LQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK
Sbjct: 1   MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFIK+VNYRHLMPTRYTLDVDLKDVVT+D LQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKIVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKL 134
           FKTGKNRWFFTKL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spg004282 vs. ExPASy TrEMBL
Match: A0A6J1FPU8 (60S ribosomal protein L27 OS=Cucurbita moschata OX=3662 GN=LOC111447385 PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 3.3e-64
Identity = 130/133 (97.74%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAG+KKYP+KVIRKDSSK
Sbjct: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVD LQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKL 134
           FKTGKNRWFFTKL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spg004282 vs. TAIR 10
Match: AT3G22230.1 (Ribosomal L27e protein family )

HSP 1 Score: 226.1 bits (575), Expect = 1.9e-59
Identity = 112/133 (84.21%), Postives = 124/133 (93.23%), Query Frame = 0


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKQNKAVI+LQGRYAG+KAVII++FDDGT DR YGHCLVAG+KKYP+KVIRKDS+K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D L+SKDKKVTA KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKL 134
           FKTGKNRWFFTKL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spg004282 vs. TAIR 10
Match: AT4G15000.1 (Ribosomal L27e protein family )

HSP 1 Score: 226.1 bits (575), Expect = 1.9e-59
Identity = 112/133 (84.21%), Postives = 123/133 (92.48%), Query Frame = 0


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKQNKAVI+LQGRYAG+KAVII++FDDG RDR YGHCLVAG+KKYP+KVIRKDS+K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D LQSKDKKV A KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKL 134
           FKTGKNRWFFTKL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spg004282 vs. TAIR 10
Match: AT2G32220.1 (Ribosomal L27e protein family )

HSP 1 Score: 207.2 bits (526), Expect = 9.0e-54
Identity = 99/133 (74.44%), Postives = 119/133 (89.47%), Query Frame = 0


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVK +K  KAVI+LQGRY G+KAVI+++FDDGT ++ YGHCLVAG+KKYP+KVIRKDS+K
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK F K++NY+H+MPTRYTLD+DLK+VV+ D + SKDKKVTA KE K +FEER
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 121 FKTGKNRWFFTKL 134
           FKTGKNRWFFTKL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spg004282 vs. TAIR 10
Match: AT4G15000.2 (Ribosomal L27e protein family )

HSP 1 Score: 204.1 bits (518), Expect = 7.6e-53
Identity = 102/123 (82.93%), Postives = 113/123 (91.87%), Query Frame = 0


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKQNKAVI+LQGRYAG+KAVII++FDDG RDR YGHCLVAG+KKYP+KVIRKDS+K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D LQSKDKKV A KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKT 124
           FKT
Sbjct: 121 FKT 123

The following BLAST results are available for this feature:

BLAST of Spg004282 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931548.1	2.4e-64	98.50	60S ribosomal protein L27-2-like [Cucurbita moschata] >XP_022942298.1 60S riboso...	[more]
XP_022931553.1	3.1e-64	97.74	60S ribosomal protein L27-2-like [Cucurbita moschata] >XP_023521539.1 60S riboso...	[more]
XP_022985069.1	5.3e-64	96.99	60S ribosomal protein L27-2-like [Cucurbita maxima]	[more]
XP_022942297.1	6.9e-64	97.74	60S ribosomal protein L27-2 [Cucurbita moschata] >XP_023513594.1 60S ribosomal p...	[more]
XP_004147740.1	2.0e-63	97.74	60S ribosomal protein L27 [Cucumis sativus]	[more]

BLAST of Spg004282 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LCL3	2.6e-58	84.21	60S ribosomal protein L27-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27B PE=2 SV=2	[more]
P51419	2.6e-58	84.21	60S ribosomal protein L27-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27C PE=2 SV=2	[more]
Q05462	7.7e-58	83.46	60S ribosomal protein L27 OS=Pisum sativum OX=3888 GN=RPL27 PE=2 SV=1	[more]
Q9SKX8	1.3e-52	74.44	60S ribosomal protein L27-1 OS=Arabidopsis thaliana OX=3702 GN=RPL27A PE=2 SV=1	[more]
P41101	2.4e-51	77.37	60S ribosomal protein L27 OS=Solanum tuberosum OX=4113 GN=RPL27 PE=2 SV=1	[more]

BLAST of Spg004282 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JA75	1.1e-64	98.50	60S ribosomal protein L27 OS=Cucurbita maxima OX=3661 GN=LOC111483122 PE=3 SV=1	[more]
A0A6J1EZ01	1.1e-64	98.50	60S ribosomal protein L27 OS=Cucurbita moschata OX=3662 GN=LOC111437692 PE=3 SV=...	[more]
A0A6J1EZ07	1.5e-64	97.74	60S ribosomal protein L27 OS=Cucurbita moschata OX=3662 GN=LOC111437697 PE=3 SV=...	[more]
A0A6J1JC92	2.6e-64	96.99	60S ribosomal protein L27 OS=Cucurbita maxima OX=3661 GN=LOC111483151 PE=3 SV=1	[more]
A0A6J1FPU8	3.3e-64	97.74	60S ribosomal protein L27 OS=Cucurbita moschata OX=3662 GN=LOC111447385 PE=3 SV=...	[more]

BLAST of Spg004282 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22230.1	1.9e-59	84.21	Ribosomal L27e protein family	[more]
AT4G15000.1	1.9e-59	84.21	Ribosomal L27e protein family	[more]
AT2G32220.1	9.0e-54	74.44	Ribosomal L27e protein family	[more]
AT4G15000.2	7.6e-53	82.93	Ribosomal L27e protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 100..120
None	No IPR available	PANTHER	PTHR10497:SF16	60S RIBOSOMAL PROTEIN L27	coord: 1..133
IPR038655	Ribosomal protein L27e superfamily	GENE3D	2.30.30.770		coord: 1..134 e-value: 4.8E-58 score: 197.1
IPR001141	Ribosomal protein L27e	PFAM	PF01777	Ribosomal_L27e	coord: 52..133 e-value: 5.2E-30 score: 103.7
IPR001141	Ribosomal protein L27e	PANTHER	PTHR10497	60S RIBOSOMAL PROTEIN L27	coord: 1..133
IPR041991	Eukaryotic Ribosomal Protein L27, KOW domain	CDD	cd06090	KOW_RPL27	coord: 6..88 e-value: 3.90063E-41 score: 130.381
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 3..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg004282.1	Spg004282.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003735	structural constituent of ribosome