Spg004224 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg004224
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein Iojap, chloroplastic
Location	scaffold6: 6804681 .. 6808814 (-)
RNA-Seq Expression	Spg004224
Synteny	Spg004224

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTTATCGAGTTTCGTACATGAAAAATGCGACAATTAGATTTCATTTGACAAATCTACAGTTAGCTTCTTCGTTTAAAATATCTTCCCTCACGGCCTACAGTTCTTCCTTTCGTCACGAAAGGAACCAGCATGGCGTTATCCACTATCTTATCTCTTCACGGCGCCGGCGCCGGGACCTCCTTCGGCGGCGAGCTCCGGCAACTGGGTTACGATTATTTCGGCGTTTCTAAAAAACCCAGAAAGCAATTTTTGTGTTCAGGCTTGAATGGGTCCCTTTTTCCATACCAAAACTGCATTTGGAAGACACCCTCTTCCAATAACTTCCATTTGAAGTCAATGGAGTCTTCGCCACTGTTCGCCGTCGGAGGAGAAGCTGAAGATGGCTTTCTATCGGTATTGTGTTTTGATTTCTTCTGTTTTGAACTTTTAGAATCAATTTGGATCATGTTTAGTTGATGTGTTTGAAAGAGATTTGATTCTATTTGCTGATTGTTGTGCGATTTCTGGGTTTTCATTGAGGGACAGCTTGTTACCTCTATTGTCGTTTAAAATGGAAGTTATTTGCTAAAAGAAAAGAGGCCTCTCTCTATTTCTCTCTCTTTTTTTACCTTTTCCTTTGATTTTTGGAAGCTGAAGCTACTTGGGATTTTAGGAAGAACCTTATCTAAATGAAATGTGTTTGCAAAAAGAAAAAGAAGCCCATCTCTCTCTATCTATCTCCCCTTTTCCCTTGATTTTTGAATGCGGCAGCCATTTGGGAATTGGAAGAATCTTATCAAAATGAAAGTAATTTGCAAAAGGAAAAGTAGCCTCTCTCTCTCTCTGATCTTTGGATGATGCAGCTACTTTAGAGGAGCTGTATCAAAGTGAAAGTTTTAAAAGAGGAAAGAAGCTTCTCTCTCTTTCTCTCTCCTGGAGTTTTTCTTAGTAATGGTGGGATTGAGTTACTTTGAACTGTATTAGTCGGTCCTAAAAGGTCAATCCCATTTACTTCTTGTAGCAGGAAACTGAAGATCGAAGATGCTGAATCCAAGCCGCTCATTTCTGTTGTTTTGGAACTTGTATCTTCATTTGCTTGCTAATCTTTAAAGGAAAATCAAGATCATGATGATTTTTTACTCCTTGATTTCATGTAAAGGAAAAATGGCTAATCAAACCGATTTATACAAATTTTGGATGTCACTTGTTTAGGCCATTTATAATCGCCAAAGAATGGAGACCTTCATGCGTTTTAGTTCATCTATGGAAATGTCTAATGTTTTTGTTGTAATTGTGTATTCCTGCATCTGCTCATCACATCGATTGACCCAGTCAATCCTTTCTGGCAGAATATGAATGATGATACCGACAATATGTATGATGATTTGTTCAAGAAATATGGGAATGTGGTATTCAAAAGCAATGATCAAAAGCTTCCTAGTGCAGAAGTCGATGATGACGCGGAAAGCCTTTCATGTAAGTTTCACTTGTCATTAGCAGGAACAAGAAACAGACATAAGTTTGTTGTGGATTAATATGTTGTGTTCATGTTGTGTTTTGGCTGCTAAATAGTTTGCTTCATTTGTGAGTCTTAAATCACCAATCAACCCAAAAGTTTAAGCCGATGAGATTGGGTAAATTTAATTATATTAATATTCTAACACTCCCTCACTTGTGGGCTTGGAAATTTGTAGATGGCCTAACAAGTGGAAATCAATATTAATTGAAGGAGGAAATGATATTACAAGAGTTTGAACTCAGGACCTCATACTTTGATACCATGTTAAATCATCCATGAACCCAAAAACTTAAGCTGATGGGTTAGGATAAATTTAATTATATCAATATTCTAACAATGAGTATAATGAGTAGTCTTAGCTAATTTATCTTAACTTGATAAGATTTTCTATAATGCAACTGTGAGGTAGTTAAATGAAAGGAAGGGAACAATCTTATCATCTTTGGTTGAACCGATAACAAAAATGGGAAGTGGGATGGAAAGAGTTATTTCCTTGGCATTGCCAGAGAATTTTTTTTTTTTCCTTCTCATTTGATCTGGAATGGTTACATACAAATTACATATCTTTTCAAAAGCAAGTGTAGGTCATCAAATTCGCTGAGTGTTACTTTCAATAAAAAAGGAGAGTTCATATTCATCATGAAGGAATTGGTAAAAGCCAAAATGAGTATAGCTACCTTCAACCAAGAGGTTTGAGGTTTGACGAATCCCCCCACTTTCAAAATGTTATTGAACTCACAAAAATAAGCCTTTGTAAAACGGTTACACCCCATTATCTCAAGTTTTCTAGAAATAAAAAGAAAAATAACTAGTCATTAGATTGAACCAATAATCATCACATTGCTTTGAATCTGACTTGTAAGCCCAATATCTTTTCTTTTAGAACTAAATCCACAAGCTTCTACTCATGGATGAACGATTGGTACTTAATACATGCATGTAGTATTCACACGTATATTATGAATTCAAAACTCTAGTTACATGGAACAGTTGGTCAACTAATAATTCAATGCTTCTCTACAGTTGCTGTGTCAATGGCGAAAGTTGCAAGTGATGTGAAGGCTGCAGATATCCGGGTTCTATTTGTGAAACCTCTAGTTTACTGGACCAGATTTTTCATCATTGCAACGGCGTTTTCTCGTCCTCAAATCGACGCTATAGGGTACTGCTTCTTTTTTGGTTTATTGTCCTCTTACTGCTTGCAATAATGAAAATTGGACTCTGCATACAAAGGTATTGCTTAAACTCACTGTTCAAGTGTATTTTGCAATGCAGATCCCGGATAAGAGACCTCGCGGAGAAGAAGTATGGAAGAAGTCCTTCCGGTGATGTGAAGCCAAATTCCTGGACTTTATTGGATTTTGGTATGCATTATTTGCTTTTTAATCTGTTCTTTTTAATATAGGATACATGTGTTTCGTTATAGAAGATGAAAGCACAAGAGACTGGGATAGGAACCAATCAGAAAGAAACGACTTATGCTAAACTAATAGCTTTACTAAAACATGTTATATGCCTCTCACTCTCTCTTAATGAAAATCAGGCTTTCATTAAGACAGTGAGAAAATACAAATAAACTATACAAAAAAGAAAAAAAAGCCTACAAAAGACAAAATGAGCCTGTACAAAGAAAACAGAGATCAGAGAAACTAAAAAAGCAAAAGTTCCTGTTGATAGGAATACAAGACAAAAGGATAGTTACAAAAGTCCTTATAAACTGACTCCCAACAGAGGAGGTATATTCTCAGTGGTAAAGGATAAAACTTCAAAATTTAATGTTGTTGTCTATTAAAAGGTGTGACTTTGGTGTTAATGACTTGGGATGTTTGGAAATATCCTTCTAGGTACTGGGTTTAAGCTCTTCTGTTGGATGTTTCTCGAAGCGGGTTTTGGAGTGAGAAAAGCTTTTTTGAGATTTAGTAGGGTGGATCATGAACATAATGCAAGTAGTGAGGCCATTTGATACCCCATTTATATATATATAATCTGTTGAATATGTCCACAGGGAAGGTCTGTAGTCCATTATAGTCTAAACTTATACTCAAATGTGATTTTTCATCTGTTAATATCTTCATCTACCATAGAGTGGATGACTTATAGACTTTTAGTATTATTATTATTATTTTATTTGAGTTCAACAGCATCCAGGGGTGAGAATTCAAACCTATGACCTTTTGGTCGAGGATATGATGTCTTAATTAGTTAAGCTAGGCTCAGGTTGACTTCTAAACCTCTTTATAACTATAGGATCATTTCATAATCGGCTTATTATTGGTGTTGGTAGGCCATTTTTCCATATCACACGGTAGACAAATCCAAATTTAATGATCAAATCAAGTATGCCACTTCAAAACAAAAAGCTTGGATTTAACTACATTCTTAGAGATGGAGAAGCTGAATTTCAACTCTCCAACTTCGTTTTGGAATTAGGGTAAAATATTACTCCAAAACGATCATCGACCGATCTTTGATACCGATGAACTAAGAAACCAAATTGCCCTGATGTTTTTGTTCTCAGGAGATGTGGTCATCCATATTTTTCTACCCCAGCAAAGAGCATTCTACAACTTGGAAGAGTTCTATGGCAATGCAACTCCCGTGGAGCTACCATTCGAAAACCAACGGCCATTTTGA

mRNA sequence

ATGGCGTTATCCACTATCTTATCTCTTCACGGCGCCGGCGCCGGGACCTCCTTCGGCGGCGAGCTCCGGCAACTGGGTTACGATTATTTCGGCGTTTCTAAAAAACCCAGAAAGCAATTTTTGTGTTCAGGCTTGAATGGGTCCCTTTTTCCATACCAAAACTGCATTTGGAAGACACCCTCTTCCAATAACTTCCATTTGAAGTCAATGGAGTCTTCGCCACTGTTCGCCGTCGGAGGAGAAGCTGAAGATGGCTTTCTATCGAATATGAATGATGATACCGACAATATGTATGATGATTTGTTCAAGAAATATGGGAATGTGGTATTCAAAAGCAATGATCAAAAGCTTCCTAGTGCAGAAGTCGATGATGACGCGGAAAGCCTTTCATTTGCTGTGTCAATGGCGAAAGTTGCAAGTGATGTGAAGGCTGCAGATATCCGGGTTCTATTTGTGAAACCTCTAGTTTACTGGACCAGATTTTTCATCATTGCAACGGCGTTTTCTCGTCCTCAAATCGACGCTATAGGATCCCGGATAAGAGACCTCGCGGAGAAGAAGTATGGAAGAAGTCCTTCCGGTGATGTGAAGCCAAATTCCTGGACTTTATTGGATTTTGGTATGCATTATTTGCTTTTTAATCTGTACTGGGGTAAAATATTACTCCAAAACGATCATCGACCGATCTTTGATACCGATGAACTAAGAAACCAAATTGCCCTGATGTTTTTGTTCTCAGGAGATGTGGTCATCCATATTTTTCTACCCCAGCAAAGAGCATTCTACAACTTGGAAGAGTTCTATGGCAATGCAACTCCCGTGGAGCTACCATTCGAAAACCAACGGCCATTTTGA

Coding sequence (CDS)

ATGGCGTTATCCACTATCTTATCTCTTCACGGCGCCGGCGCCGGGACCTCCTTCGGCGGCGAGCTCCGGCAACTGGGTTACGATTATTTCGGCGTTTCTAAAAAACCCAGAAAGCAATTTTTGTGTTCAGGCTTGAATGGGTCCCTTTTTCCATACCAAAACTGCATTTGGAAGACACCCTCTTCCAATAACTTCCATTTGAAGTCAATGGAGTCTTCGCCACTGTTCGCCGTCGGAGGAGAAGCTGAAGATGGCTTTCTATCGAATATGAATGATGATACCGACAATATGTATGATGATTTGTTCAAGAAATATGGGAATGTGGTATTCAAAAGCAATGATCAAAAGCTTCCTAGTGCAGAAGTCGATGATGACGCGGAAAGCCTTTCATTTGCTGTGTCAATGGCGAAAGTTGCAAGTGATGTGAAGGCTGCAGATATCCGGGTTCTATTTGTGAAACCTCTAGTTTACTGGACCAGATTTTTCATCATTGCAACGGCGTTTTCTCGTCCTCAAATCGACGCTATAGGATCCCGGATAAGAGACCTCGCGGAGAAGAAGTATGGAAGAAGTCCTTCCGGTGATGTGAAGCCAAATTCCTGGACTTTATTGGATTTTGGTATGCATTATTTGCTTTTTAATCTGTACTGGGGTAAAATATTACTCCAAAACGATCATCGACCGATCTTTGATACCGATGAACTAAGAAACCAAATTGCCCTGATGTTTTTGTTCTCAGGAGATGTGGTCATCCATATTTTTCTACCCCAGCAAAGAGCATTCTACAACTTGGAAGAGTTCTATGGCAATGCAACTCCCGTGGAGCTACCATTCGAAAACCAACGGCCATTTTGA

Protein sequence

MALSTILSLHGAGAGTSFGGELRQLGYDYFGVSKKPRKQFLCSGLNGSLFPYQNCIWKTPSSNNFHLKSMESSPLFAVGGEAEDGFLSNMNDDTDNMYDDLFKKYGNVVFKSNDQKLPSAEVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSPSGDVKPNSWTLLDFGMHYLLFNLYWGKILLQNDHRPIFDTDELRNQIALMFLFSGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF

Homology

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BLAST of Spg004224 vs. NCBI nr
Match: XP_004147757.1 (protein Iojap, chloroplastic [Cucumis sativus] >KGN53523.1 hypothetical protein Csa_014809 [Cucumis sativus])

HSP 1 Score: 436.0 bits (1120), Expect = 2.4e-118
Identity = 222/284 (78.17%), Postives = 232/284 (81.69%), Query Frame = 0


Query: 1   MALSTILSLHGAGAGTSFGGELRQLGYDYFGVSKKPRKQFLCSGLNGSLFPYQNCIWKTP 60
           MALST LSLHGAGAGT FG ELRQLG+DYFGV K+PRKQ  CS  NGS FPY+NC+W+ P
Sbjct: 1   MALSTTLSLHGAGAGTLFGAELRQLGHDYFGVFKRPRKQIFCSCWNGSPFPYRNCLWRVP 60

Query: 61  SSNNFHLKSMESSPLFAVGGEAEDGFLSNMNDDTDNMYDDLFKKYGNVVFKSNDQKLPSA 120
           S NNFHLKSMESSPLFAVGGEAEDGFLSNMND+TD+MYD+LFKKYGNVVFKSNDQK PSA
Sbjct: 61  SVNNFHLKSMESSPLFAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQKPPSA 120

Query: 121 EVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180
           E+DDD+ESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI
Sbjct: 121 EIDDDSESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180

Query: 181 RDLAEKKYGRSPSGDVKPNSWTLLDFGMHYLLFNLYWGKILLQNDHRPIFDTDELRNQIA 240
           RDLAEKKYGRSPSGDVKPNSWTLLDF                                  
Sbjct: 181 RDLAEKKYGRSPSGDVKPNSWTLLDF---------------------------------- 240

Query: 241 LMFLFSGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 285
                 GDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF
Sbjct: 241 ------GDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 244

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BLAST of Spg004224 vs. NCBI nr
Match: XP_038876545.1 (protein Iojap, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 428.7 bits (1101), Expect = 3.9e-116
Identity = 223/284 (78.52%), Postives = 229/284 (80.63%), Query Frame = 0


Query: 1   MALSTILSLHGAGAGTSFGGELRQLGYDYFGVSKKPRKQFLCSGLNGSLFPYQNCIWKTP 60
           MALST LSLHGAGAGT FGGELRQLG+D F VSK+PRKQ  CS  NGS FP QNCIW  P
Sbjct: 1   MALSTTLSLHGAGAGTLFGGELRQLGHDNFRVSKRPRKQNFCSCWNGSPFPNQNCIWGMP 60

Query: 61  SSNNFHLKSMESSPLFAVGGEAEDGFLSNMNDDTDNMYDDLFKKYGNVVFKSNDQKLPSA 120
           S+NNFHLKSME SPLFAV GEAEDGFLSNMNDDTD+MYDDLFKK+GNVVFKSNDQK PSA
Sbjct: 61  SANNFHLKSMECSPLFAVEGEAEDGFLSNMNDDTDDMYDDLFKKFGNVVFKSNDQKPPSA 120

Query: 121 EVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180
           E+DDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI
Sbjct: 121 EIDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180

Query: 181 RDLAEKKYGRSPSGDVKPNSWTLLDFGMHYLLFNLYWGKILLQNDHRPIFDTDELRNQIA 240
           RDLAEKKYGRSPSGDVKPNSWTLLDF                                  
Sbjct: 181 RDLAEKKYGRSPSGDVKPNSWTLLDF---------------------------------- 240

Query: 241 LMFLFSGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 285
                 GDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF
Sbjct: 241 ------GDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 244

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BLAST of Spg004224 vs. NCBI nr
Match: XP_023524638.1 (protein Iojap, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 425.2 bits (1092), Expect = 4.3e-115
Identity = 219/284 (77.11%), Postives = 230/284 (80.99%), Query Frame = 0


Query: 1   MALSTILSLHGAGAGTSFGGELRQLGYDYFGVSKKPRKQFLCSGLNGSLFPYQNCIWKTP 60
           MALS +LSLHGAGAGTSFGG+ RQLG+DYFGVS +PRKQF CS  NGS F  +NCIWK P
Sbjct: 1   MALSIVLSLHGAGAGTSFGGQFRQLGHDYFGVSGRPRKQFWCSCWNGSSFSSRNCIWKIP 60

Query: 61  SSNNFHLKSMESSPLFAVGGEAEDGFLSNMNDDTDNMYDDLFKKYGNVVFKSNDQKLPSA 120
           SSNNFHLKSMESSPLFAVG EAED FLSNMN+DTD+MYDDLFKK+G+VVFK NDQK P+A
Sbjct: 61  SSNNFHLKSMESSPLFAVGKEAEDSFLSNMNEDTDDMYDDLFKKHGSVVFKRNDQKPPTA 120

Query: 121 EVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180
           EVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI
Sbjct: 121 EVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180

Query: 181 RDLAEKKYGRSPSGDVKPNSWTLLDFGMHYLLFNLYWGKILLQNDHRPIFDTDELRNQIA 240
           RDLAEKKYGRSPSGDVKPNSWTLLDF                                  
Sbjct: 181 RDLAEKKYGRSPSGDVKPNSWTLLDF---------------------------------- 240

Query: 241 LMFLFSGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 285
                 GDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQ+PF
Sbjct: 241 ------GDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQQPF 244

[Close]

BLAST of Spg004224 vs. NCBI nr
Match: XP_022942371.1 (protein Iojap, chloroplastic [Cucurbita moschata])

HSP 1 Score: 424.9 bits (1091), Expect = 5.6e-115
Identity = 219/284 (77.11%), Postives = 230/284 (80.99%), Query Frame = 0


Query: 1   MALSTILSLHGAGAGTSFGGELRQLGYDYFGVSKKPRKQFLCSGLNGSLFPYQNCIWKTP 60
           MALS +LSLHGAGAGTSFGG+ RQLG+DYFGVS +PRKQF CS  NGS F  QNCIWK P
Sbjct: 1   MALSIVLSLHGAGAGTSFGGQFRQLGHDYFGVSGRPRKQFWCSCWNGSSFSSQNCIWKIP 60

Query: 61  SSNNFHLKSMESSPLFAVGGEAEDGFLSNMNDDTDNMYDDLFKKYGNVVFKSNDQKLPSA 120
           SSNNFHLKSMESSPLFAVG EAED FLSNMN+DTD+MYDDLFKK+G+VVFK +DQK P+A
Sbjct: 61  SSNNFHLKSMESSPLFAVGKEAEDSFLSNMNEDTDDMYDDLFKKHGSVVFKRDDQKPPTA 120

Query: 121 EVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180
           EVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI
Sbjct: 121 EVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180

Query: 181 RDLAEKKYGRSPSGDVKPNSWTLLDFGMHYLLFNLYWGKILLQNDHRPIFDTDELRNQIA 240
           RDLAEKKYGRSPSGDVKPNSWTLLDF                                  
Sbjct: 181 RDLAEKKYGRSPSGDVKPNSWTLLDF---------------------------------- 240

Query: 241 LMFLFSGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 285
                 GDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQ+PF
Sbjct: 241 ------GDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQQPF 244

[Close]

BLAST of Spg004224 vs. NCBI nr
Match: TYK16385.1 (Oligomerization domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 424.9 bits (1091), Expect = 5.6e-115
Identity = 218/284 (76.76%), Postives = 231/284 (81.34%), Query Frame = 0


Query: 1   MALSTILSLHGAGAGTSFGGELRQLGYDYFGVSKKPRKQFLCSGLNGSLFPYQNCIWKTP 60
           MALST LSLHGAGAGT FGGEL QLG++YFGV ++PRKQ  CS  NGS FPY+NCIW+ P
Sbjct: 1   MALSTTLSLHGAGAGTLFGGELWQLGHNYFGVFRRPRKQIFCSCWNGSPFPYRNCIWRVP 60

Query: 61  SSNNFHLKSMESSPLFAVGGEAEDGFLSNMNDDTDNMYDDLFKKYGNVVFKSNDQKLPSA 120
           S+NNF+LKS+ESSPLFAV GEAEDGFLSNMNDDT++MYD+LFKKYGNVVFKSNDQK PSA
Sbjct: 61  SANNFYLKSVESSPLFAVRGEAEDGFLSNMNDDTNDMYDELFKKYGNVVFKSNDQKPPSA 120

Query: 121 EVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180
           E+DDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI
Sbjct: 121 EIDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180

Query: 181 RDLAEKKYGRSPSGDVKPNSWTLLDFGMHYLLFNLYWGKILLQNDHRPIFDTDELRNQIA 240
           RDLAEKKYGRS SGDVKPNSWTLLDF                                  
Sbjct: 181 RDLAEKKYGRSSSGDVKPNSWTLLDF---------------------------------- 240

Query: 241 LMFLFSGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 285
                 GDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF
Sbjct: 241 ------GDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 244

[Close]

BLAST of Spg004224 vs. ExPASy Swiss-Prot
Match: Q9LDY9 (Protein Iojap, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=IJ PE=2 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 3.6e-72
Identity = 155/281 (55.16%), Postives = 179/281 (63.70%), Query Frame = 0


Query: 1   MALSTILSLHGAGAGTSFGGELRQLGYDYFGVSKKPRKQFLCSGLNGSLFPYQNCIWKTP 60
           MA ST L++    AG    G+ R        + +K      C        PY NC W+  
Sbjct: 1   MASSTGLTV----AGALLAGDFRLPAVSSL-IPRKTSSSLSCLSNRDLSSPY-NCCWRL- 60

Query: 61  SSNNFHLKSMESSPLFAVGGEAEDGFLSNMNDDTDNMYDDLFKKYGNVVFKSNDQKLPSA 120
            S    L S+ +S  FAVG EAEDGFLSN+++DTD M+DDLF KYG VVF+S D K P+A
Sbjct: 61  -SRGKILTSLSNSRKFAVGKEAEDGFLSNVSEDTDEMFDDLFNKYGKVVFRSTDVKSPTA 120

Query: 121 EVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180
           EVDDDAESL+FAV +AKVASDVKA DI+VLFVKPLVYWTRFFIIATAFSRPQIDAIGSR+
Sbjct: 121 EVDDDAESLAFAVELAKVASDVKAGDIKVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRM 180

Query: 181 RDLAEKKYGRSPSGDVKPNSWTLLDFGMHYLLFNLYWGKILLQNDHRPIFDTDELRNQIA 240
           RDLAEKKYG+  +GDVKPNSWTLLDF                                  
Sbjct: 181 RDLAEKKYGKVANGDVKPNSWTLLDF---------------------------------- 233

Query: 241 LMFLFSGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQ 282
                 GDVVIH+FLP QR FYNLE+FYGNA  +ELPFE+Q
Sbjct: 241 ------GDVVIHLFLPPQRTFYNLEDFYGNAMQIELPFEDQ 233

[Close]

BLAST of Spg004224 vs. ExPASy Swiss-Prot
Match: Q41822 (Protein Iojap, chloroplastic OS=Zea mays OX=4577 GN=Ij PE=1 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 2.3e-50
Identity = 107/199 (53.77%), Postives = 127/199 (63.82%), Query Frame = 0


Query: 88  SNMN----DDTDNMYDDLFKKYGNVVFKSNDQKLPSAEVDDDAESLSFAVSMAKVASDVK 147
           SN+N    DD D + +DL K++G VV+ S     P+ E DDDAE LSFAVS+AK AS++K
Sbjct: 69  SNVNFGRGDDADKLLEDLLKQHGEVVYSSGGPPDPTVEADDDAECLSFAVSLAKAASEIK 128

Query: 148 AADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSPSGDVKPNSWTL 207
           A DIRVL V+ LVYWTRFFII TAFS  QIDAI S++RD+ EK++ +  SGD KPNSWTL
Sbjct: 129 ATDIRVLCVRRLVYWTRFFIILTAFSNAQIDAISSKMRDIGEKQFSKVASGDTKPNSWTL 188

Query: 208 LDFGMHYLLFNLYWGKILLQNDHRPIFDTDELRNQIALMFLFSGDVVIHIFLPQQRAFYN 267
           LDF                                        GDVV+HIFLPQQRAFYN
Sbjct: 189 LDF----------------------------------------GDVVVHIFLPQQRAFYN 227

Query: 268 LEEFYGNATPVELPFENQR 283
           LEEFYGNATP+ELPF+ QR
Sbjct: 249 LEEFYGNATPIELPFDTQR 227

[Close]

BLAST of Spg004224 vs. ExPASy Swiss-Prot
Match: P73658 (Ribosomal silencing factor RsfS OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rsfS PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.8e-08
Identity = 41/141 (29.08%), Postives = 62/141 (43.97%), Query Frame = 0


Query: 134 SMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGRSPS 193
           ++A+ A + KA D+ +L V  + Y   +F+I T FSR Q+ AI   I    E  +G+ P+
Sbjct: 33  TIAQAAEERKAGDLVILKVTDVSYLADYFVICTGFSRTQVRAIADNIEKQVELVHGQLPT 92

Query: 194 GDVKPNS---WTLLDFGMHYLLFNLYWGKILLQNDHRPIFDTDELRNQIALMFLFSGDVV 253
              + NS   W L DF                                        GDV+
Sbjct: 93  -HTEGNSESIWVLQDF----------------------------------------GDVL 132

Query: 254 IHIFLPQQRAFYNLEEFYGNA 272
           +H F+P++R FY LE F+G+A
Sbjct: 153 VHTFMPEEREFYKLEAFWGHA 132

[Close]

BLAST of Spg004224 vs. ExPASy Swiss-Prot
Match: Q97P97 (Ribosomal silencing factor RsfS OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) OX=170187 GN=rsfS PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 7.1e-04
Identity = 38/144 (26.39%), Postives = 59/144 (40.97%), Query Frame = 0


Query: 135 MAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRD-LAEKKY-GRSP 194
           + K A + +A DI  L V+ L   T + +I ++ +  Q+DAI + IR+ +A+  + G   
Sbjct: 10  VVKAADEKRAEDILALDVQDLTSVTDYLVITSSMNSRQLDAIAANIREKVAQAGFKGSHV 69

Query: 195 SGDVKPNSWTLLDFGMHYLLFNLYWGKILLQNDHRPIFDTDELRNQIALMFLFSGDVVIH 254
            GD     W LLD G                                         VV+H
Sbjct: 70  EGDA-AGGWVLLDLGA----------------------------------------VVVH 112

Query: 255 IFLPQQRAFYNLEEFYGNATPVEL 277
           IF  + RA YNLE+ +  A  V++
Sbjct: 130 IFSEEMRAHYNLEKLWHEANSVDI 112

[Close]

BLAST of Spg004224 vs. ExPASy TrEMBL
Match: A0A0A0KVG5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G064060 PE=3 SV=1)

HSP 1 Score: 436.0 bits (1120), Expect = 1.2e-118
Identity = 222/284 (78.17%), Postives = 232/284 (81.69%), Query Frame = 0


Query: 1   MALSTILSLHGAGAGTSFGGELRQLGYDYFGVSKKPRKQFLCSGLNGSLFPYQNCIWKTP 60
           MALST LSLHGAGAGT FG ELRQLG+DYFGV K+PRKQ  CS  NGS FPY+NC+W+ P
Sbjct: 1   MALSTTLSLHGAGAGTLFGAELRQLGHDYFGVFKRPRKQIFCSCWNGSPFPYRNCLWRVP 60

Query: 61  SSNNFHLKSMESSPLFAVGGEAEDGFLSNMNDDTDNMYDDLFKKYGNVVFKSNDQKLPSA 120
           S NNFHLKSMESSPLFAVGGEAEDGFLSNMND+TD+MYD+LFKKYGNVVFKSNDQK PSA
Sbjct: 61  SVNNFHLKSMESSPLFAVGGEAEDGFLSNMNDETDDMYDELFKKYGNVVFKSNDQKPPSA 120

Query: 121 EVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180
           E+DDD+ESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI
Sbjct: 121 EIDDDSESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180

Query: 181 RDLAEKKYGRSPSGDVKPNSWTLLDFGMHYLLFNLYWGKILLQNDHRPIFDTDELRNQIA 240
           RDLAEKKYGRSPSGDVKPNSWTLLDF                                  
Sbjct: 181 RDLAEKKYGRSPSGDVKPNSWTLLDF---------------------------------- 240

Query: 241 LMFLFSGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 285
                 GDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF
Sbjct: 241 ------GDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 244

[Close]

BLAST of Spg004224 vs. ExPASy TrEMBL
Match: A0A5D3CY15 (Oligomerization domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001790 PE=3 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 2.7e-115
Identity = 218/284 (76.76%), Postives = 231/284 (81.34%), Query Frame = 0


Query: 1   MALSTILSLHGAGAGTSFGGELRQLGYDYFGVSKKPRKQFLCSGLNGSLFPYQNCIWKTP 60
           MALST LSLHGAGAGT FGGEL QLG++YFGV ++PRKQ  CS  NGS FPY+NCIW+ P
Sbjct: 1   MALSTTLSLHGAGAGTLFGGELWQLGHNYFGVFRRPRKQIFCSCWNGSPFPYRNCIWRVP 60

Query: 61  SSNNFHLKSMESSPLFAVGGEAEDGFLSNMNDDTDNMYDDLFKKYGNVVFKSNDQKLPSA 120
           S+NNF+LKS+ESSPLFAV GEAEDGFLSNMNDDT++MYD+LFKKYGNVVFKSNDQK PSA
Sbjct: 61  SANNFYLKSVESSPLFAVRGEAEDGFLSNMNDDTNDMYDELFKKYGNVVFKSNDQKPPSA 120

Query: 121 EVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180
           E+DDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI
Sbjct: 121 EIDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180

Query: 181 RDLAEKKYGRSPSGDVKPNSWTLLDFGMHYLLFNLYWGKILLQNDHRPIFDTDELRNQIA 240
           RDLAEKKYGRS SGDVKPNSWTLLDF                                  
Sbjct: 181 RDLAEKKYGRSSSGDVKPNSWTLLDF---------------------------------- 240

Query: 241 LMFLFSGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 285
                 GDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF
Sbjct: 241 ------GDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 244

[Close]

BLAST of Spg004224 vs. ExPASy TrEMBL
Match: A0A6J1FNP0 (protein Iojap, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111447435 PE=3 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 2.7e-115
Identity = 219/284 (77.11%), Postives = 230/284 (80.99%), Query Frame = 0


Query: 1   MALSTILSLHGAGAGTSFGGELRQLGYDYFGVSKKPRKQFLCSGLNGSLFPYQNCIWKTP 60
           MALS +LSLHGAGAGTSFGG+ RQLG+DYFGVS +PRKQF CS  NGS F  QNCIWK P
Sbjct: 1   MALSIVLSLHGAGAGTSFGGQFRQLGHDYFGVSGRPRKQFWCSCWNGSSFSSQNCIWKIP 60

Query: 61  SSNNFHLKSMESSPLFAVGGEAEDGFLSNMNDDTDNMYDDLFKKYGNVVFKSNDQKLPSA 120
           SSNNFHLKSMESSPLFAVG EAED FLSNMN+DTD+MYDDLFKK+G+VVFK +DQK P+A
Sbjct: 61  SSNNFHLKSMESSPLFAVGKEAEDSFLSNMNEDTDDMYDDLFKKHGSVVFKRDDQKPPTA 120

Query: 121 EVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180
           EVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI
Sbjct: 121 EVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180

Query: 181 RDLAEKKYGRSPSGDVKPNSWTLLDFGMHYLLFNLYWGKILLQNDHRPIFDTDELRNQIA 240
           RDLAEKKYGRSPSGDVKPNSWTLLDF                                  
Sbjct: 181 RDLAEKKYGRSPSGDVKPNSWTLLDF---------------------------------- 240

Query: 241 LMFLFSGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 285
                 GDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQ+PF
Sbjct: 241 ------GDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQQPF 244

[Close]

BLAST of Spg004224 vs. ExPASy TrEMBL
Match: A0A5A7V7J6 (Oligomerization domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00520 PE=3 SV=1)

HSP 1 Score: 423.3 bits (1087), Expect = 7.9e-115
Identity = 218/284 (76.76%), Postives = 231/284 (81.34%), Query Frame = 0


Query: 1   MALSTILSLHGAGAGTSFGGELRQLGYDYFGVSKKPRKQFLCSGLNGSLFPYQNCIWKTP 60
           MALST LSLHGAGAGT FGGEL QLG++YFGV ++PRKQ   S  NGS FPY+NCIW+ P
Sbjct: 1   MALSTTLSLHGAGAGTLFGGELWQLGHNYFGVFRRPRKQIFGSCWNGSPFPYRNCIWRVP 60

Query: 61  SSNNFHLKSMESSPLFAVGGEAEDGFLSNMNDDTDNMYDDLFKKYGNVVFKSNDQKLPSA 120
           S+NNF+LKS+ESSPLFAV GEAEDGFLSNMNDDT++MYD+LFKKYGNVVFKSNDQK PSA
Sbjct: 61  SANNFYLKSVESSPLFAVRGEAEDGFLSNMNDDTNDMYDELFKKYGNVVFKSNDQKPPSA 120

Query: 121 EVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180
           E+DDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI
Sbjct: 121 EIDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180

Query: 181 RDLAEKKYGRSPSGDVKPNSWTLLDFGMHYLLFNLYWGKILLQNDHRPIFDTDELRNQIA 240
           RDLAEKKYGRSPSGDVKPNSWTLLDF                                  
Sbjct: 181 RDLAEKKYGRSPSGDVKPNSWTLLDF---------------------------------- 240

Query: 241 LMFLFSGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 285
                 GDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF
Sbjct: 241 ------GDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 244

[Close]

BLAST of Spg004224 vs. ExPASy TrEMBL
Match: A0A6J1IZC7 (protein Iojap, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481267 PE=3 SV=1)

HSP 1 Score: 418.7 bits (1075), Expect = 1.9e-113
Identity = 217/284 (76.41%), Postives = 228/284 (80.28%), Query Frame = 0


Query: 1   MALSTILSLHGAGAGTSFGGELRQLGYDYFGVSKKPRKQFLCSGLNGSLFPYQNCIWKTP 60
           MALS +LSLHGAGA TSFGGE RQLG+DYF VS +PRKQF CS  NGS F  +NCIWK P
Sbjct: 1   MALSIVLSLHGAGAVTSFGGEFRQLGHDYFRVSGRPRKQFWCSCWNGSSFSSRNCIWKIP 60

Query: 61  SSNNFHLKSMESSPLFAVGGEAEDGFLSNMNDDTDNMYDDLFKKYGNVVFKSNDQKLPSA 120
           SS+NFHLKSMESSPLF+VG EAED FLSNMN+DTD+MYDDLFKK+GNVVFK NDQK P+A
Sbjct: 61  SSHNFHLKSMESSPLFSVGKEAEDSFLSNMNEDTDDMYDDLFKKHGNVVFKRNDQKPPTA 120

Query: 121 EVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180
           EVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI
Sbjct: 121 EVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180

Query: 181 RDLAEKKYGRSPSGDVKPNSWTLLDFGMHYLLFNLYWGKILLQNDHRPIFDTDELRNQIA 240
           RDLAEKKYGRSPSGDVKPNSWTLLDF                                  
Sbjct: 181 RDLAEKKYGRSPSGDVKPNSWTLLDF---------------------------------- 240

Query: 241 LMFLFSGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQRPF 285
                 GDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQ+PF
Sbjct: 241 ------GDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQQPF 244

[Close]

BLAST of Spg004224 vs. TAIR 10
Match: AT3G12930.1 (Lojap-related protein )

HSP 1 Score: 273.1 bits (697), Expect = 2.5e-73
Identity = 155/281 (55.16%), Postives = 179/281 (63.70%), Query Frame = 0


Query: 1   MALSTILSLHGAGAGTSFGGELRQLGYDYFGVSKKPRKQFLCSGLNGSLFPYQNCIWKTP 60
           MA ST L++    AG    G+ R        + +K      C        PY NC W+  
Sbjct: 1   MASSTGLTV----AGALLAGDFRLPAVSSL-IPRKTSSSLSCLSNRDLSSPY-NCCWRL- 60

Query: 61  SSNNFHLKSMESSPLFAVGGEAEDGFLSNMNDDTDNMYDDLFKKYGNVVFKSNDQKLPSA 120
            S    L S+ +S  FAVG EAEDGFLSN+++DTD M+DDLF KYG VVF+S D K P+A
Sbjct: 61  -SRGKILTSLSNSRKFAVGKEAEDGFLSNVSEDTDEMFDDLFNKYGKVVFRSTDVKSPTA 120

Query: 121 EVDDDAESLSFAVSMAKVASDVKAADIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRI 180
           EVDDDAESL+FAV +AKVASDVKA DI+VLFVKPLVYWTRFFIIATAFSRPQIDAIGSR+
Sbjct: 121 EVDDDAESLAFAVELAKVASDVKAGDIKVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRM 180

Query: 181 RDLAEKKYGRSPSGDVKPNSWTLLDFGMHYLLFNLYWGKILLQNDHRPIFDTDELRNQIA 240
           RDLAEKKYG+  +GDVKPNSWTLLDF                                  
Sbjct: 181 RDLAEKKYGKVANGDVKPNSWTLLDF---------------------------------- 233

Query: 241 LMFLFSGDVVIHIFLPQQRAFYNLEEFYGNATPVELPFENQ 282
                 GDVVIH+FLP QR FYNLE+FYGNA  +ELPFE+Q
Sbjct: 241 ------GDVVIHLFLPPQRTFYNLEDFYGNAMQIELPFEDQ 233

The following BLAST results are available for this feature:

BLAST of Spg004224 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147757.1	2.4e-118	78.17	protein Iojap, chloroplastic [Cucumis sativus] >KGN53523.1 hypothetical protein ...	[more]
XP_038876545.1	3.9e-116	78.52	protein Iojap, chloroplastic isoform X2 [Benincasa hispida]	[more]
XP_023524638.1	4.3e-115	77.11	protein Iojap, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022942371.1	5.6e-115	77.11	protein Iojap, chloroplastic [Cucurbita moschata]	[more]
TYK16385.1	5.6e-115	76.76	Oligomerization domain-containing protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg004224 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LDY9	3.6e-72	55.16	Protein Iojap, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=IJ PE=2 SV=1	[more]
Q41822	2.3e-50	53.77	Protein Iojap, chloroplastic OS=Zea mays OX=4577 GN=Ij PE=1 SV=1	[more]
P73658	2.8e-08	29.08	Ribosomal silencing factor RsfS OS=Synechocystis sp. (strain PCC 6803 / Kazusa) ...	[more]
Q97P97	7.1e-04	26.39	Ribosomal silencing factor RsfS OS=Streptococcus pneumoniae serotype 4 (strain A...	[more]

BLAST of Spg004224 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVG5	1.2e-118	78.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G064060 PE=3 SV=1	[more]
A0A5D3CY15	2.7e-115	76.76	Oligomerization domain-containing protein OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A6J1FNP0	2.7e-115	77.11	protein Iojap, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111447435 PE=3 ...	[more]
A0A5A7V7J6	7.9e-115	76.76	Oligomerization domain-containing protein OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A6J1IZC7	1.9e-113	76.41	protein Iojap, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481267 PE=3 SV...	[more]

BLAST of Spg004224 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12930.1	2.5e-73	55.16	Lojap-related protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043519	Nucleotidyltransferase superfamily	GENE3D	3.30.460.10	Beta Polymerase, domain 2	coord: 219..277 e-value: 1.2E-5 score: 26.9
IPR043519	Nucleotidyltransferase superfamily	GENE3D	3.30.460.10	Beta Polymerase, domain 2	coord: 123..215 e-value: 2.9E-10 score: 42.0
IPR043519	Nucleotidyltransferase superfamily	SUPERFAMILY	81301	Nucleotidyltransferase	coord: 129..207
IPR043519	Nucleotidyltransferase superfamily	SUPERFAMILY	81301	Nucleotidyltransferase	coord: 247..278
None	No IPR available	PFAM	PF02410	RsfS	coord: 135..268 e-value: 1.1E-14 score: 54.7
None	No IPR available	PANTHER	PTHR21043:SF2	PROTEIN IOJAP, CHLOROPLASTIC	coord: 1..207
None	No IPR available	PANTHER	PTHR21043:SF2	PROTEIN IOJAP, CHLOROPLASTIC	coord: 242..283
IPR004394	Protein Iojap/ribosomal silencing factor RsfS	PANTHER	PTHR21043	IOJAP SUPERFAMILY ORTHOLOG	coord: 1..207
IPR004394	Protein Iojap/ribosomal silencing factor RsfS	PANTHER	PTHR21043	IOJAP SUPERFAMILY ORTHOLOG	coord: 242..283

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg004224.1	Spg004224.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090071	negative regulation of ribosome biogenesis
biological_process	GO:0017148	negative regulation of translation
cellular_component	GO:0042644	chloroplast nucleoid
cellular_component	GO:0000427	plastid-encoded plastid RNA polymerase complex
molecular_function	GO:0043023	ribosomal large subunit binding