Spg004191 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg004191
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Photosystem II 10 kDa polypeptide, chloroplastic
Location	scaffold6: 6858368 .. 6860341 (+)
RNA-Seq Expression	Spg004191
Synteny	Spg004191

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTATCAAGCTCCGAGCTCCGTTTTGCGCCATTGCAGATTTTCGAGCGAAGAGGAAGAGGAAGAAGAAGAAGAAGAAAGAAGCTTATCGATCGGAAATGGCGGCCTCGGTGATGACCTCAGTGAGTCTCAAACCAGCTCCCTTCACCGTCGAGAAATCGGCGAGAGGTCTTCCGTCTCTGGTGAGAACTTCCGGCTCCTTCAAGGTCGAGGCCAGTGGCGGGAAGAAGATCAAGACCGACACTCCCTACGGTAAAATTAGACACCGATCGATGCGATTTTTTTTGGCTTATTGTAGATGGTTGGGGATTGGTTTTTGGTTTATGTAAGATTGTAATTCGATTTTCGATGTGATAATGCGAGTAGGAATCAACGGTTCCATGAATTTGAGGGACGGACTTGATGCATCGGGAAGGAAGGGCAAGGTTGCTGCTCTGATTTATGAATCTCCTCCTTTTATCGATGGATTTTGATGTTTTGATAGTCTTGTTTTATACTCTGTGACTGGAATTTGATAGTGTTTTTGAATTTGATTGATTTAGGGAAAGGGAGTCTACCAATTTGTCGACAAGTATGGGGCCAATGTCGATGGCTACAGGTGAACTTCGTCTTTCTTGTTTTCTGTTAGGGTTTTGGCTCTGATTTTGTTCATAGTTTTCTGGTTTGAAAATCAACCTAAATCCACAGCGTTACTGTTTATGTTCGATTTGAGAATGTTCGAATATCATCATATCAACAATCTCATGTGTATTCTGTTCTCAACTTTGCAGTCCCATCTACGACACCAAAGACTGGTCTCCAAGTGGTGATGTCTACGTTGGTGGTAAGTTCTTCCTTCACTTTTGAATCTGCAATCCTGTTTTTATTTAATCATTCATAAAATAAATACTCTGGATTACAGAATCTTTTACGTTAGTAGTTTCAATGGAATTGTAAGGATTCTTCTTCAATTTATGAGTTATGGCGTTGAAAAGTGGTTTCTAATGTTTGCTTCAGTCCAAATGATTTGTTTTTTTCAAATGAATTTCTATTATTGATTTACTTCCGTTATTGGTGGAGTTCATCTTTCTTCTCCTTTTTTTTTTTACTACATGTGAAGTGAGATTCCTGATCTCTTGGTTGTGAATACAAGTTTTATGTTGTTGACATCTTTCTTCTTCTTTTTACTTTTTTGATACGTTTGTAAATATACATGTTTTTTATTTTTATATTAAAAAAGAATCAAAGTTAATAAGTTTATTCATTAATAAAATGATTTTAATTATTTCAATCTCAAAATTAATTATTTTTGTATTATATCCTTATTTATACTTATTTCGTATGTTCAACAAGTGTTTGGTACATGCCTGACAAGTTTTGGATTTGTATTCATTTTTGTACAACTAGTGTTTTATACTCATTGATTGTGCTAAACAAGTGTACAACATGTGTCCAAAGTATCCAAACTAAAGTGTCCACTCTTCCTTAGAACATAAATCACTACTAAACTTAACAACTTAAACTATAGATTATAATAAGTATTCTTTTCATATATTCTTAACACTCTCTTTTATATATAAATTTGAATTATGGTTCAAAGTTCGAGAAATAAATTAATAATATAAAAATAAACAACATTGGTTCTATTAGAATTCAACTTTTCTTACTTCAATACCATGTTAAATTAGTGTTTGGCCCAATAACGTGCATTTGGTTTTGATTATAGAGTTAGTTTTCATATATCTATCCCTGCAGAAAACTTGCATCAAAATTATCTTAACAACAATGCCTTATGAAACATTAAGCACCAACCACTAAGGGATAGCATTGAAATATGGCCTTGCATTGGGATCAAACATGAACAAATTTGTTGATATCATTGTGGACTACATTGAATTTTAGGTACTACTGGGTTAGCCATTTGGGCAGTGACCTTGGCTGGCCTTCTTGCTGGTGGTGCTCTTCTTGTGTACAACACCAGTGCTTTGGTGCAGTAA

mRNA sequence

ATTATCAAGCTCCGAGCTCCGTTTTGCGCCATTGCAGATTTTCGAGCGAAGAGGAAGAGGAAGAAGAAGAAGAAGAAAGAAGCTTATCGATCGGAAATGGCGGCCTCGGTGATGACCTCAGTGAGTCTCAAACCAGCTCCCTTCACCGTCGAGAAATCGGCGAGAGGTCTTCCGTCTCTGGTGAGAACTTCCGGCTCCTTCAAGGTCGAGGCCAGTGGCGGGAAGAAGATCAAGACCGACACTCCCTACGATTGTAATTCGATTTTCGATGTGATAATGCGAGTAGGAATCAACGGTTCCATGAATTTGAGGGACGGACTTGATGCATCGGGAAGGAAGGGCAAGGGAAAGGGAGTCTACCAATTTGTCGACAAGTATGGGGCCAATGTCGATGGCTACAGCGTTACTGTTTATGTTCGATTTGAGAATGTTCGAATATCATCATATCAACAATCTCATGTGTATTCTGTTCTCAACTTTGCAGTCCCATCTACGACACCAAAGACTGGTCTCCAAGTGGTGATGTCTACGTTGGTGGTAAGTACTACTGGGTTAGCCATTTGGGCAGTGACCTTGGCTGGCCTTCTTGCTGGTGGTGCTCTTCTTGTGTACAACACCAGTGCTTTGGTGCAGTAA

Coding sequence (CDS)

ATTATCAAGCTCCGAGCTCCGTTTTGCGCCATTGCAGATTTTCGAGCGAAGAGGAAGAGGAAGAAGAAGAAGAAGAAAGAAGCTTATCGATCGGAAATGGCGGCCTCGGTGATGACCTCAGTGAGTCTCAAACCAGCTCCCTTCACCGTCGAGAAATCGGCGAGAGGTCTTCCGTCTCTGGTGAGAACTTCCGGCTCCTTCAAGGTCGAGGCCAGTGGCGGGAAGAAGATCAAGACCGACACTCCCTACGATTGTAATTCGATTTTCGATGTGATAATGCGAGTAGGAATCAACGGTTCCATGAATTTGAGGGACGGACTTGATGCATCGGGAAGGAAGGGCAAGGGAAAGGGAGTCTACCAATTTGTCGACAAGTATGGGGCCAATGTCGATGGCTACAGCGTTACTGTTTATGTTCGATTTGAGAATGTTCGAATATCATCATATCAACAATCTCATGTGTATTCTGTTCTCAACTTTGCAGTCCCATCTACGACACCAAAGACTGGTCTCCAAGTGGTGATGTCTACGTTGGTGGTAAGTACTACTGGGTTAGCCATTTGGGCAGTGACCTTGGCTGGCCTTCTTGCTGGTGGTGCTCTTCTTGTGTACAACACCAGTGCTTTGGTGCAGTAA

Protein sequence

IIKLRAPFCAIADFRAKRKRKKKKKKEAYRSEMAASVMTSVSLKPAPFTVEKSARGLPSLVRTSGSFKVEASGGKKIKTDTPYDCNSIFDVIMRVGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSVTVYVRFENVRISSYQQSHVYSVLNFAVPSTTPKTGLQVVMSTLVVSTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

Homology

[Close]

BLAST of Spg004191 vs. NCBI nr
Match: XP_022136536.1 (photosystem II 10 kDa polypeptide, chloroplastic [Momordica charantia])

HSP 1 Score: 194.9 bits (494), Expect = 7.0e-46
Identity = 120/179 (67.04%), Postives = 125/179 (69.83%), Query Frame = 0


Query: 33  MAASVMTSVSLKPAPFTVEKSARGLPSLVRTSGSFKVEASGGKKIKTDTPYDCNSIFDVI 92
           MAASVMTSVSLKPAPFTVEKSA+GLPSL RTS SFKVEASGGKKIKTD PY         
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSAKGLPSLARTSASFKVEASGGKKIKTDKPY--------- 60

Query: 93  MRVGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSVTVYVRFENVRISSYQQS 152
              GINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGY                  S
Sbjct: 61  ---GINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGY------------------S 120

Query: 153 HVYSVLNFAVPSTTPKTGLQVVMSTLVVSTTGLAIWAVTLAGLLAGGALLVYNTSALVQ 212
            +Y   +++ PS     G           TTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Sbjct: 121 PIYDTKDWS-PSGDVYVG----------GTTGLAIWAVTLAGLLAGGALLVYNTSALVQ 138

[Close]

BLAST of Spg004191 vs. NCBI nr
Match: XP_038876356.1 (photosystem II 10 kDa polypeptide, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 189.9 bits (481), Expect = 2.3e-44
Identity = 118/179 (65.92%), Postives = 123/179 (68.72%), Query Frame = 0


Query: 33  MAASVMTSVSLKPAPFTVEKSARGLPSLVRTSGSFKVEASGGKKIKTDTPYDCNSIFDVI 92
           MAASVMTSVSLKPAPFTVEKSA+GLPSL R S  FKVEASGGKKIKTD PY         
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSAKGLPSLARNSVPFKVEASGGKKIKTDKPY--------- 60

Query: 93  MRVGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSVTVYVRFENVRISSYQQS 152
              GINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGY                  S
Sbjct: 61  ---GINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGY------------------S 120

Query: 153 HVYSVLNFAVPSTTPKTGLQVVMSTLVVSTTGLAIWAVTLAGLLAGGALLVYNTSALVQ 212
            +Y   +++ PS     G           TTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Sbjct: 121 PIYDTKDWS-PSGDVYVG----------GTTGLAIWAVTLAGLLAGGALLVYNTSALVQ 138

[Close]

BLAST of Spg004191 vs. NCBI nr
Match: XP_023553544.1 (photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 189.5 bits (480), Expect = 2.9e-44
Identity = 116/179 (64.80%), Postives = 124/179 (69.27%), Query Frame = 0


Query: 33  MAASVMTSVSLKPAPFTVEKSARGLPSLVRTSGSFKVEASGGKKIKTDTPYDCNSIFDVI 92
           MAASVMTSVSLKPAPFTVEK+ARG+PSL R SG FKVEASGGKKIKTD PY         
Sbjct: 1   MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPY--------- 60

Query: 93  MRVGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSVTVYVRFENVRISSYQQS 152
              GINGSMNLRDG+DASGRKGKGKGVYQ+VDKYGANVDGY                  S
Sbjct: 61  ---GINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGY------------------S 120

Query: 153 HVYSVLNFAVPSTTPKTGLQVVMSTLVVSTTGLAIWAVTLAGLLAGGALLVYNTSALVQ 212
            +Y   +++ PS     G           TTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Sbjct: 121 PIYDTKDWS-PSGDVYVG----------GTTGLAIWAVTLAGLLAGGALLVYNTSALVQ 138

[Close]

BLAST of Spg004191 vs. NCBI nr
Match: XP_022931545.1 (photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita moschata] >XP_022985312.1 photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita maxima] >XP_022985313.1 photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita maxima] >KAG6577072.1 Photosystem II 10 kDa polypeptide, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015080.1 Photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.0 bits (476), Expect = 8.6e-44
Identity = 115/179 (64.25%), Postives = 123/179 (68.72%), Query Frame = 0


Query: 33  MAASVMTSVSLKPAPFTVEKSARGLPSLVRTSGSFKVEASGGKKIKTDTPYDCNSIFDVI 92
           MAASVMTSVSLKPAPFTVEK+ARG+PSL R SG FKVEASGGKKIKTD PY         
Sbjct: 1   MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPY--------- 60

Query: 93  MRVGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSVTVYVRFENVRISSYQQS 152
              GINGSMNLRDG+DASGRKGKGKGVYQ+VDKYGANVDGY                  S
Sbjct: 61  ---GINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGY------------------S 120

Query: 153 HVYSVLNFAVPSTTPKTGLQVVMSTLVVSTTGLAIWAVTLAGLLAGGALLVYNTSALVQ 212
            +Y   +++ PS     G           TTGLAIWAVTLAGLLAGGALLVYNTSAL Q
Sbjct: 121 PIYDTKDWS-PSGDVYVG----------GTTGLAIWAVTLAGLLAGGALLVYNTSALAQ 138

[Close]

BLAST of Spg004191 vs. NCBI nr
Match: XP_008451826.1 (PREDICTED: photosystem II 10 kDa polypeptide, chloroplastic [Cucumis melo] >TYK16392.1 photosystem II 10 kDa polypeptide [Cucumis melo var. makuwa])

HSP 1 Score: 186.8 bits (473), Expect = 1.9e-43
Identity = 117/179 (65.36%), Postives = 122/179 (68.16%), Query Frame = 0


Query: 33  MAASVMTSVSLKPAPFTVEKSARGLPSLVRTSGSFKVEASGGKKIKTDTPYDCNSIFDVI 92
           MAASVMTSVSLKPAPFTVEKSARGLPSL R S SFKV ASGGKKIKTD PY         
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPY--------- 60

Query: 93  MRVGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSVTVYVRFENVRISSYQQS 152
              GINGSMNLRDG+DASGRK KGKGVYQFVDKYGANVDGY                  S
Sbjct: 61  ---GINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY------------------S 120

Query: 153 HVYSVLNFAVPSTTPKTGLQVVMSTLVVSTTGLAIWAVTLAGLLAGGALLVYNTSALVQ 212
            +Y   +++       TG        V  TTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Sbjct: 121 PIYDTKDWS------PTG-----DVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ 138

[Close]

BLAST of Spg004191 vs. ExPASy Swiss-Prot
Match: P27202 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBR PE=1 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 8.1e-37
Identity = 102/181 (56.35%), Postives = 117/181 (64.64%), Query Frame = 0


Query: 33  MAASVM-TSVSLKPAPFTVEK-SARGLPSLVRTSGSFKVEASGGKKIKTDTPYDCNSIFD 92
           MAASVM +SV+LKPA FTVEK +ARGLPSL R   SFK+ ASG KKIKTD P+       
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPF------- 60

Query: 93  VIMRVGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSVTVYVRFENVRISSYQ 152
                GINGSM+LRDG+DASGRKGKG GVY++VDKYGANVDGY                 
Sbjct: 61  -----GINGSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGY----------------- 120

Query: 153 QSHVYSVLNFAVPSTTPKTGLQVVMSTLVVSTTGLAIWAVTLAGLLAGGALLVYNTSALV 212
            S +Y+   ++      K G+           TGLAIWAVTLAG+LAGGALLVYNTSAL 
Sbjct: 121 -SPIYNENEWSASGDVYKGGV-----------TGLAIWAVTLAGILAGGALLVYNTSALA 140

[Close]

BLAST of Spg004191 vs. ExPASy Swiss-Prot
Match: Q40519 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum OX=4097 GN=PSBR PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 8.1e-37
Identity = 101/180 (56.11%), Postives = 119/180 (66.11%), Query Frame = 0


Query: 33  MAASVMTSVSLKPAPFTVEKSA-RGLPSLVRTSGSFKVEASGGKKIKTDTPYDCNSIFDV 92
           MA++VM   SLKPAPF+VEK+A +GLPSL R+S SF+V+ASG KK+KTD PY        
Sbjct: 1   MASTVM---SLKPAPFSVEKTAVKGLPSLARSSSSFRVQASGVKKLKTDKPY-------- 60

Query: 93  IMRVGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSVTVYVRFENVRISSYQQ 152
               GINGSM+LRDG+DASGRK KGKGVYQFVDKYGANVDGY                  
Sbjct: 61  ----GINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGY------------------ 120

Query: 153 SHVYSVLNFAVPSTTPKTGLQVVMSTLVVSTTGLAIWAVTLAGLLAGGALLVYNTSALVQ 212
           S +Y+  +++ PS     G           TTGLAIWAVTL G+LAGGALLV+NTSAL Q
Sbjct: 121 SPIYNTDDWS-PSGDVYVG----------GTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136

[Close]

BLAST of Spg004191 vs. ExPASy Swiss-Prot
Match: P49108 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris OX=3711 GN=PSBR PE=2 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.4e-36
Identity = 103/182 (56.59%), Postives = 118/182 (64.84%), Query Frame = 0


Query: 33  MAASVM-TSVSLKPAPFTVEK-SARGLPSLVRTS-GSFKVEASGGKKIKTDTPYDCNSIF 92
           MAASVM +SV+LKPA FTVEK SARGLPSL R S  SF++ ASG KKIKTD P+      
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPF------ 60

Query: 93  DVIMRVGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSVTVYVRFENVRISSY 152
                 G+NGSM+LRDG+DASGRKGKG GVY+FVDKYGANVDGY                
Sbjct: 61  ------GVNGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGY---------------- 120

Query: 153 QQSHVYSVLNFAVPSTTPKTGLQVVMSTLVVSTTGLAIWAVTLAGLLAGGALLVYNTSAL 212
             S +Y+   ++      K G+           TGLAIWAVTLAG+LAGGALLVYNTSAL
Sbjct: 121 --SPIYNEDEWSASGDVYKGGV-----------TGLAIWAVTLAGILAGGALLVYNTSAL 141

[Close]

BLAST of Spg004191 vs. ExPASy Swiss-Prot
Match: P06183 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum OX=4113 GN=PSBR PE=2 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 5.2e-36
Identity = 101/180 (56.11%), Postives = 116/180 (64.44%), Query Frame = 0


Query: 33  MAASVMTSVSLKPAPFTVEK-SARGLPSLVRTSGSFKVEASGGKKIKTDTPYDCNSIFDV 92
           MA++VM+S+SLKP  FT+EK S +GLPSL R+S SFKV ASG KK+KTD PY        
Sbjct: 1   MASTVMSSLSLKPT-FTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPY-------- 60

Query: 93  IMRVGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSVTVYVRFENVRISSYQQ 152
               GINGSM LRDG+DASGRK KGKGVYQ+VDKYGANVDGY                  
Sbjct: 61  ----GINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGY------------------ 120

Query: 153 SHVYSVLNFAVPSTTPKTGLQVVMSTLVVSTTGLAIWAVTLAGLLAGGALLVYNTSALVQ 212
           S +Y+   ++ PS     G           TTGLAIWAVTL G+LAGGALLVYNTSAL Q
Sbjct: 121 SPIYNTDEWS-PSGDVYVG----------GTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138

[Close]

BLAST of Spg004191 vs. ExPASy Swiss-Prot
Match: Q40163 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum OX=4081 GN=PSBR PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 6.8e-36
Identity = 101/180 (56.11%), Postives = 116/180 (64.44%), Query Frame = 0


Query: 33  MAASVMTSVSLKPAPFTVEK-SARGLPSLVRTSGSFKVEASGGKKIKTDTPYDCNSIFDV 92
           MA++VM+S+SLKP  FT+EK S +GLPSL R+S SFKV ASG KK+KTD PY        
Sbjct: 1   MASTVMSSLSLKPT-FTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPY-------- 60

Query: 93  IMRVGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSVTVYVRFENVRISSYQQ 152
               GINGSM LRDG+DASGRK KGKGVYQ+VDKYGANVDGY                  
Sbjct: 61  ----GINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGY------------------ 120

Query: 153 SHVYSVLNFAVPSTTPKTGLQVVMSTLVVSTTGLAIWAVTLAGLLAGGALLVYNTSALVQ 212
           S +Y+   ++ PS     G           TTGLAIWAVTL G+LAGGALLVYNTSAL Q
Sbjct: 121 SPIYNTDEWS-PSGDVYVG----------GTTGLAIWAVTLLGILAGGALLVYNTSALAQ 138

[Close]

BLAST of Spg004191 vs. ExPASy TrEMBL
Match: A0A6J1C3S3 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008214 PE=3 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 3.4e-46
Identity = 120/179 (67.04%), Postives = 125/179 (69.83%), Query Frame = 0


Query: 33  MAASVMTSVSLKPAPFTVEKSARGLPSLVRTSGSFKVEASGGKKIKTDTPYDCNSIFDVI 92
           MAASVMTSVSLKPAPFTVEKSA+GLPSL RTS SFKVEASGGKKIKTD PY         
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSAKGLPSLARTSASFKVEASGGKKIKTDKPY--------- 60

Query: 93  MRVGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSVTVYVRFENVRISSYQQS 152
              GINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGY                  S
Sbjct: 61  ---GINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGY------------------S 120

Query: 153 HVYSVLNFAVPSTTPKTGLQVVMSTLVVSTTGLAIWAVTLAGLLAGGALLVYNTSALVQ 212
            +Y   +++ PS     G           TTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Sbjct: 121 PIYDTKDWS-PSGDVYVG----------GTTGLAIWAVTLAGLLAGGALLVYNTSALVQ 138

[Close]

BLAST of Spg004191 vs. ExPASy TrEMBL
Match: A0A6J1JDA0 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111483357 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 4.2e-44
Identity = 115/179 (64.25%), Postives = 123/179 (68.72%), Query Frame = 0


Query: 33  MAASVMTSVSLKPAPFTVEKSARGLPSLVRTSGSFKVEASGGKKIKTDTPYDCNSIFDVI 92
           MAASVMTSVSLKPAPFTVEK+ARG+PSL R SG FKVEASGGKKIKTD PY         
Sbjct: 1   MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPY--------- 60

Query: 93  MRVGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSVTVYVRFENVRISSYQQS 152
              GINGSMNLRDG+DASGRKGKGKGVYQ+VDKYGANVDGY                  S
Sbjct: 61  ---GINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGY------------------S 120

Query: 153 HVYSVLNFAVPSTTPKTGLQVVMSTLVVSTTGLAIWAVTLAGLLAGGALLVYNTSALVQ 212
            +Y   +++ PS     G           TTGLAIWAVTLAGLLAGGALLVYNTSAL Q
Sbjct: 121 PIYDTKDWS-PSGDVYVG----------GTTGLAIWAVTLAGLLAGGALLVYNTSALAQ 138

[Close]

BLAST of Spg004191 vs. ExPASy TrEMBL
Match: A0A6J1EZP8 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111437690 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 4.2e-44
Identity = 115/179 (64.25%), Postives = 123/179 (68.72%), Query Frame = 0


Query: 33  MAASVMTSVSLKPAPFTVEKSARGLPSLVRTSGSFKVEASGGKKIKTDTPYDCNSIFDVI 92
           MAASVMTSVSLKPAPFTVEK+ARG+PSL R SG FKVEASGGKKIKTD PY         
Sbjct: 1   MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPY--------- 60

Query: 93  MRVGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSVTVYVRFENVRISSYQQS 152
              GINGSMNLRDG+DASGRKGKGKGVYQ+VDKYGANVDGY                  S
Sbjct: 61  ---GINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGY------------------S 120

Query: 153 HVYSVLNFAVPSTTPKTGLQVVMSTLVVSTTGLAIWAVTLAGLLAGGALLVYNTSALVQ 212
            +Y   +++ PS     G           TTGLAIWAVTLAGLLAGGALLVYNTSAL Q
Sbjct: 121 PIYDTKDWS-PSGDVYVG----------GTTGLAIWAVTLAGLLAGGALLVYNTSALAQ 138

[Close]

BLAST of Spg004191 vs. ExPASy TrEMBL
Match: A0A5D3CXX1 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001860 PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 9.3e-44
Identity = 117/179 (65.36%), Postives = 122/179 (68.16%), Query Frame = 0


Query: 33  MAASVMTSVSLKPAPFTVEKSARGLPSLVRTSGSFKVEASGGKKIKTDTPYDCNSIFDVI 92
           MAASVMTSVSLKPAPFTVEKSARGLPSL R S SFKV ASGGKKIKTD PY         
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPY--------- 60

Query: 93  MRVGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSVTVYVRFENVRISSYQQS 152
              GINGSMNLRDG+DASGRK KGKGVYQFVDKYGANVDGY                  S
Sbjct: 61  ---GINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY------------------S 120

Query: 153 HVYSVLNFAVPSTTPKTGLQVVMSTLVVSTTGLAIWAVTLAGLLAGGALLVYNTSALVQ 212
            +Y   +++       TG        V  TTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Sbjct: 121 PIYDTKDWS------PTG-----DVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ 138

[Close]

BLAST of Spg004191 vs. ExPASy TrEMBL
Match: A0A1S3BSD1 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492995 PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 9.3e-44
Identity = 117/179 (65.36%), Postives = 122/179 (68.16%), Query Frame = 0


Query: 33  MAASVMTSVSLKPAPFTVEKSARGLPSLVRTSGSFKVEASGGKKIKTDTPYDCNSIFDVI 92
           MAASVMTSVSLKPAPFTVEKSARGLPSL R S SFKV ASGGKKIKTD PY         
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPY--------- 60

Query: 93  MRVGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSVTVYVRFENVRISSYQQS 152
              GINGSMNLRDG+DASGRK KGKGVYQFVDKYGANVDGY                  S
Sbjct: 61  ---GINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGY------------------S 120

Query: 153 HVYSVLNFAVPSTTPKTGLQVVMSTLVVSTTGLAIWAVTLAGLLAGGALLVYNTSALVQ 212
            +Y   +++       TG        V  TTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Sbjct: 121 PIYDTKDWS------PTG-----DVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ 138

[Close]

BLAST of Spg004191 vs. TAIR 10
Match: AT1G79040.1 (photosystem II subunit R )

HSP 1 Score: 155.2 bits (391), Expect = 5.7e-38
Identity = 102/181 (56.35%), Postives = 117/181 (64.64%), Query Frame = 0


Query: 33  MAASVM-TSVSLKPAPFTVEK-SARGLPSLVRTSGSFKVEASGGKKIKTDTPYDCNSIFD 92
           MAASVM +SV+LKPA FTVEK +ARGLPSL R   SFK+ ASG KKIKTD P+       
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPF------- 60

Query: 93  VIMRVGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSVTVYVRFENVRISSYQ 152
                GINGSM+LRDG+DASGRKGKG GVY++VDKYGANVDGY                 
Sbjct: 61  -----GINGSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGY----------------- 120

Query: 153 QSHVYSVLNFAVPSTTPKTGLQVVMSTLVVSTTGLAIWAVTLAGLLAGGALLVYNTSALV 212
            S +Y+   ++      K G+           TGLAIWAVTLAG+LAGGALLVYNTSAL 
Sbjct: 121 -SPIYNENEWSASGDVYKGGV-----------TGLAIWAVTLAGILAGGALLVYNTSALA 140

The following BLAST results are available for this feature:

BLAST of Spg004191 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136536.1	7.0e-46	67.04	photosystem II 10 kDa polypeptide, chloroplastic [Momordica charantia]	[more]
XP_038876356.1	2.3e-44	65.92	photosystem II 10 kDa polypeptide, chloroplastic-like [Benincasa hispida]	[more]
XP_023553544.1	2.9e-44	64.80	photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022931545.1	8.6e-44	64.25	photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita moschata] >XP_022985...	[more]
XP_008451826.1	1.9e-43	65.36	PREDICTED: photosystem II 10 kDa polypeptide, chloroplastic [Cucumis melo] >TYK1...	[more]

BLAST of Spg004191 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27202	8.1e-37	56.35	Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q40519	8.1e-37	56.11	Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum OX=4097 GN...	[more]
P49108	2.4e-36	56.59	Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris OX=3711 ...	[more]
P06183	5.2e-36	56.11	Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum OX=4113 GN...	[more]
Q40163	6.8e-36	56.11	Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum OX=4081...	[more]

BLAST of Spg004191 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C3S3	3.4e-46	67.04	Photosystem II 10 kDa polypeptide, chloroplastic OS=Momordica charantia OX=3673 ...	[more]
A0A6J1JDA0	4.2e-44	64.25	Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1EZP8	4.2e-44	64.25	Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucurbita moschata OX=3662 G...	[more]
A0A5D3CXX1	9.3e-44	65.36	Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3BSD1	9.3e-44	65.36	Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1...	[more]

BLAST of Spg004191 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79040.1	5.7e-38	56.35	photosystem II subunit R	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006814	Photosystem II PsbR	PFAM	PF04725	PsbR	coord: 179..209 e-value: 7.8E-8 score: 32.6 coord: 72..135 e-value: 2.9E-20 score: 72.4
IPR006814	Photosystem II PsbR	PANTHER	PTHR34369	PHOTOSYSTEM II 10 KDA POLYPEPTIDE, CHLOROPLASTIC	coord: 33..210

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg004191.1	Spg004191.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009536	plastid
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0042651	thylakoid membrane