Spg004136 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg004136
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold9: 13905585 .. 13906508 (+)
RNA-Seq Expression	Spg004136
Synteny	Spg004136

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAAGAGAGATTTCCTCAATGAGAAGGGATTCTCTAACAGAGCAGGAACATTGCCAGAGTTTGTGAGCAGGATCATATCTCAATACAAGTGGCAGGAGTACTGTGCTCACCCTCAGGAGGTTGTTGTGCCTCTAGTTCGAGAGTTTTACTCCGACCTGAGGGAGGAGAGCATTAACATTAGCATTGAAACTTGTGGCCAACAAGGGGGTTCAATGGAAAGAATCACAGACCAAAGTGAAGTCTTTAGTGCCAATCGACCTAAATCCAGAATCGACAGTTTGGCTTCACTTCATCAAGAACCGTTTGAAGCCAACCACCCACGACAACACAATTTCAGTGGATAGAGTGATGCTACTCTATTGTCTTATGAAGGGGTTGGAGATCAACGTAGGGAGCATCATTAGGGATGAGATCTTAGCCTATGGATGGAAAAGGGCAAGCAAGCTTTTCTTCGGCTCACTCATCACCCAGCTCTGTCAGAGGGTGAAGATTGTGCCAGGCAAGGACGAGGAGCGCCATTTCTTTAAACCAACCATTGACTTGTCCTTGATAGGGAAGCTTCAGCAGAACAACATCCAGAGGAAGGATAAAGCCTCTACATCACAGGCACTCCTCAATCAGGGCCGAATGTGGCCTCTCCATCCCAGCACACTCCTTTTACAAGGCCTTCACCAGCATCGAAAGCCCTAGGTATGGTCCACCGCCAGTTAGATCAAATCAGGGAGAACCTGAAGACGTACTGGGTATATGCAAAGGAGAGGGATGAAGCTATTAGAGAGTTATATCTCTCTATTGCCCTTAGTATTGCTCCGGTCTTTCCAAATTTCCCTCAGTCGCTGCTGCCCCAAGAAGAAGAGGATTCTGATGAAGAGGAAGATGAAGAGAATGAAGAGAAAGAGAGTTCCTCGGATGAGGAATAG

mRNA sequence

ATGAGAAAGAGAGATTTCCTCAATGAGAAGGGATTCTCTAACAGAGCAGGAACATTGCCAGAGTTTGTGAGCAGGATCATATCTCAATACAAGTGGCAGGAGTACTGTGCTCACCCTCAGGAGGTTGTTGTGCCTCTAGTTCGAGAGTTTTACTCCGACCTGAGGGAGGAGAGCATTAACATTAGCATTGAAACTTGTGGCCAACAAGGGGGTTCAATGGAAAGAATCACAGACCAAAGTGAAGTCTTTAGTGCCAATCGACCTAAATCCAGAATCGACAGTTTGGCTTCACTTCATCAAGAACCGTTTGAAGCCAACCACCCACGACAACACAATTTCAGCACTCCTCAATCAGGGCCGAATGTGGCCTCTCCATCCCAGCACACTCCTTTTACAAGGCCTTCACCAGCATCGAAAGCCCTAGGTATGGTCCACCGCCAGTTAGATCAAATCAGGGAGAACCTGAAGACGTACTGGGTATATGCAAAGGAGAGGGATGAAGCTATTAGAGAGTTATATCTCTCTATTGCCCTTAGTATTGCTCCGGTCTTTCCAAATTTCCCTCAGTCGCTGCTGCCCCAAGAAGAAGAGGATTCTGATGAAGAGGAAGATGAAGAGAATGAAGAGAAAGAGAGTTCCTCGGATGAGGAATAG

Coding sequence (CDS)

ATGAGAAAGAGAGATTTCCTCAATGAGAAGGGATTCTCTAACAGAGCAGGAACATTGCCAGAGTTTGTGAGCAGGATCATATCTCAATACAAGTGGCAGGAGTACTGTGCTCACCCTCAGGAGGTTGTTGTGCCTCTAGTTCGAGAGTTTTACTCCGACCTGAGGGAGGAGAGCATTAACATTAGCATTGAAACTTGTGGCCAACAAGGGGGTTCAATGGAAAGAATCACAGACCAAAGTGAAGTCTTTAGTGCCAATCGACCTAAATCCAGAATCGACAGTTTGGCTTCACTTCATCAAGAACCGTTTGAAGCCAACCACCCACGACAACACAATTTCAGCACTCCTCAATCAGGGCCGAATGTGGCCTCTCCATCCCAGCACACTCCTTTTACAAGGCCTTCACCAGCATCGAAAGCCCTAGGTATGGTCCACCGCCAGTTAGATCAAATCAGGGAGAACCTGAAGACGTACTGGGTATATGCAAAGGAGAGGGATGAAGCTATTAGAGAGTTATATCTCTCTATTGCCCTTAGTATTGCTCCGGTCTTTCCAAATTTCCCTCAGTCGCTGCTGCCCCAAGAAGAAGAGGATTCTGATGAAGAGGAAGATGAAGAGAATGAAGAGAAAGAGAGTTCCTCGGATGAGGAATAG

Protein sequence

MRKRDFLNEKGFSNRAGTLPEFVSRIISQYKWQEYCAHPQEVVVPLVREFYSDLREESINISIETCGQQGGSMERITDQSEVFSANRPKSRIDSLASLHQEPFEANHPRQHNFSTPQSGPNVASPSQHTPFTRPSPASKALGMVHRQLDQIRENLKTYWVYAKERDEAIRELYLSIALSIAPVFPNFPQSLLPQEEEDSDEEEDEENEEKESSSDEE

Homology

[Close]

BLAST of Spg004136 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 60.1 bits (144), Expect = 2.8e-05
Identity = 27/64 (42.19%), Postives = 44/64 (68.75%), Query Frame = 0


Query: 1   MRKRDFLNEKGF----SNRAGTLPEFVSRIISQYKWQEYCAHPQEVVVPLVREFYSDLRE 60
           ++ R    EKGF    S   G LP F++++I+Q+ W+++CAHP++ +VPLVREFY++L +
Sbjct: 38  IQNRPLNAEKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTD 97

[Close]

BLAST of Spg004136 vs. NCBI nr
Match: PON35554.1 (hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii])

HSP 1 Score: 59.3 bits (142), Expect = 4.7e-05
Identity = 26/60 (43.33%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 1  MRKRDFLNEKGF----SNRAGTLPEFVSRIISQYKWQEYCAHPQEVVVPLVREFYSDLRE 57
          ++ R    EKGF    S   G LP F++++I+Q+ W+++CAHP++ +VPLVREFY++L +
Sbjct: 29 IQNRPLNAEKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTD 87

[Close]

BLAST of Spg004136 vs. NCBI nr
Match: PON85987.1 (hypothetical protein TorRG33x02_181920, partial [Trema orientale])

HSP 1 Score: 57.4 bits (137), Expect = 1.8e-04
Identity = 25/60 (41.67%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 1   MRKRDFLNEKGF----SNRAGTLPEFVSRIISQYKWQEYCAHPQEVVVPLVREFYSDLRE 57
           ++K+    EKGF    S   G  P F++++I+Q+ W+++CAHP++ +VPLVREFY++L +
Sbjct: 61  IQKQPLNAEKGFLLNNSETMGQQP-FIAQVINQHNWRQFCAHPEDPIVPLVREFYANLTD 119

[Close]

BLAST of Spg004136 vs. NCBI nr
Match: PON65868.1 (hypothetical protein PanWU01x14_113570 [Parasponia andersonii])

HSP 1 Score: 55.8 bits (133), Expect = 5.2e-04
Identity = 23/57 (40.35%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 1  MRKRDFLNEKGF---SNRAGTLPEFVSRIISQYKWQEYCAHPQEVVVPLVREFYSDL 55
          ++ R    EKGF   +++    P F++ +I+Q+ WQ +CAHP++ +VPLVREFY+++
Sbjct: 29 IQNRPLSAEKGFVGDNSKPLEKPPFIADVITQHNWQLFCAHPEDPIVPLVREFYANM 85

[Close]

BLAST of Spg004136 vs. NCBI nr
Match: PON42276.1 (hypothetical protein PanWU01x14_283280 [Parasponia andersonii])

HSP 1 Score: 55.1 bits (131), Expect = 8.9e-04
Identity = 22/57 (38.60%), Postives = 39/57 (68.42%), Query Frame = 0


Query: 1  MRKRDFLNEKGF---SNRAGTLPEFVSRIISQYKWQEYCAHPQEVVVPLVREFYSDL 55
          ++ R    EKGF   +++    P F+  +I+Q+ WQ +CAHP++++ PLVREFY+++
Sbjct: 29 IQNRPLSAEKGFVGDNSKPLEKPPFIEDVITQHNWQLFCAHPEDLIAPLVREFYANM 85

[Close]

BLAST of Spg004136 vs. ExPASy TrEMBL
Match: A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-05
Identity = 27/64 (42.19%), Postives = 44/64 (68.75%), Query Frame = 0


Query: 1   MRKRDFLNEKGF----SNRAGTLPEFVSRIISQYKWQEYCAHPQEVVVPLVREFYSDLRE 60
           ++ R    EKGF    S   G LP F++++I+Q+ W+++CAHP++ +VPLVREFY++L +
Sbjct: 38  IQNRPLNAEKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTD 97

[Close]

BLAST of Spg004136 vs. ExPASy TrEMBL
Match: A0A2P5AGA5 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_335450 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.3e-05
Identity = 26/60 (43.33%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 1  MRKRDFLNEKGF----SNRAGTLPEFVSRIISQYKWQEYCAHPQEVVVPLVREFYSDLRE 57
          ++ R    EKGF    S   G LP F++++I+Q+ W+++CAHP++ +VPLVREFY++L +
Sbjct: 29 IQNRPLNAEKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTD 87

[Close]

BLAST of Spg004136 vs. ExPASy TrEMBL
Match: A0A2P5EK98 (Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_181920 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.7e-05
Identity = 25/60 (41.67%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 1   MRKRDFLNEKGF----SNRAGTLPEFVSRIISQYKWQEYCAHPQEVVVPLVREFYSDLRE 57
           ++K+    EKGF    S   G  P F++++I+Q+ W+++CAHP++ +VPLVREFY++L +
Sbjct: 61  IQKQPLNAEKGFLLNNSETMGQQP-FIAQVINQHNWRQFCAHPEDPIVPLVREFYANLTD 119

[Close]

BLAST of Spg004136 vs. ExPASy TrEMBL
Match: A0A2P5CXV1 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_113570 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.5e-04
Identity = 23/57 (40.35%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 1  MRKRDFLNEKGF---SNRAGTLPEFVSRIISQYKWQEYCAHPQEVVVPLVREFYSDL 55
          ++ R    EKGF   +++    P F++ +I+Q+ WQ +CAHP++ +VPLVREFY+++
Sbjct: 29 IQNRPLSAEKGFVGDNSKPLEKPPFIADVITQHNWQLFCAHPEDPIVPLVREFYANM 85

[Close]

BLAST of Spg004136 vs. ExPASy TrEMBL
Match: A0A2P5B0K0 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_283280 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.3e-04
Identity = 22/57 (38.60%), Postives = 39/57 (68.42%), Query Frame = 0


Query: 1  MRKRDFLNEKGF---SNRAGTLPEFVSRIISQYKWQEYCAHPQEVVVPLVREFYSDL 55
          ++ R    EKGF   +++    P F+  +I+Q+ WQ +CAHP++++ PLVREFY+++
Sbjct: 29 IQNRPLSAEKGFVGDNSKPLEKPPFIEDVITQHNWQLFCAHPEDLIAPLVREFYANM 85

The following BLAST results are available for this feature:

BLAST of Spg004136 vs. NCBI nr


Match Name	E-value	Identity	Description
PON46472.1	2.8e-05	42.19	hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]	[more]
PON35554.1	4.7e-05	43.33	hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii]	[more]
PON85987.1	1.8e-04	41.67	hypothetical protein TorRG33x02_181920, partial [Trema orientale]	[more]
PON65868.1	5.2e-04	40.35	hypothetical protein PanWU01x14_113570 [Parasponia andersonii]	[more]
PON42276.1	8.9e-04	38.60	hypothetical protein PanWU01x14_283280 [Parasponia andersonii]	[more]

BLAST of Spg004136 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg004136 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5BCG4	1.3e-05	42.19	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
A0A2P5AGA5	2.3e-05	43.33	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
A0A2P5EK98	8.7e-05	41.67	Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_181...	[more]
A0A2P5CXV1	2.5e-04	40.35	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_113570 PE...	[more]
A0A2P5B0K0	4.3e-04	38.60	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_283280 PE...	[more]

BLAST of Spg004136 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 194..217
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 186..217
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg004136.1	Spg004136.1	mRNA