Spg004109 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg004109
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	INVOLVED IN: photosynthesis; LOCATED IN: photosystem I, chloroplast, thylakoid membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages;
Location	scaffold4: 2004782 .. 2006720 (+)
RNA-Seq Expression	Spg004109
Synteny	Spg004109

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTCCATCGGCCAAAGCATTCTGATGGCTCTCGCCGTCACTCTCAACAAATTCGCTTCCTCAAACGTTCAATCTGTTCAGAAAAACAAACTCAACAGACCATCTACTGCCACCGCCGCCGCCGCCGGCGCTTCTCAAATTGGAAGAAGAGGCCTCCTCTTGTCTGCCATCGCCGCCGCCGCCGCCACCGCTCCTGAAGAAGCCGTCGACTCCAGAACCCAACTGCTAAAAAGTGTGCAGCATTCTTCTCTCTGTTATTCTTTTTTGGGTTTTTTTTTTCTTTCTTCAATTTTACTTTTATTTTTAAAATTTTCTGTTTCTGGAAATCGTTATTGCATTCTTAAATTTTAAACGTAATTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTAACTAGAAAAAGCGATGTTGAGCAAATCTGTTTTTGTGTGTGTGTGTTTTTTTTTACAAGTAGAGAGATTCGAACCACAGTCTTCTTAGTACAAGCTAGTTGAATTCTGTTATCGAATATATCAATATTTTCAAAAAGAAAAAAAAAAAAATAAACAACTACTACTTAGGGGATTAGTATATACTATATAATTTTTTTTTTTTGGTTTCTTAGAAAAATGGAAAGTTTGCTAATACGAGCATTAGTTCTTGTACTAACGACCGAGAGGTCTGTGGTTCGAGTCTTTCGACCTCCACATGTTGTTGTCAAAAAAAAAAAAAAAAAAATAGAAAGTTTCAAATAAGGTATATATCATCATGAAAAATCATATGGTGGTAGATTTACTAATCATTTTTTTTTGAAAAAAAAATCTATTTGTTTAAATAAATAATTTGATTTGAGTAATGTTATGTTTAATTTTTTTTAAACATTACATTTTATTAAAATAAAAATTATTAATAATTTATTGACTTAATAATTTTTTTGGTTAAATTATCAAAAATTCCCTTGAACTATGGGATTGGTTTCAATTATACCCTTGAACTTTTGAAAGTTTCATTTTAGCTTTTGAAGTTTGAAGTTTGTTTCAAACCGACCCTTGGAGACATTTTTCGTTAAATTTATGCATGAAGAATTATGCGTTTAGGAGTGTTTTATTGTTTTTTTCATGCTTATGCTCAAATGTGTTCACATAAGTGACAATACATATATGTAAACACATCATTTTCCTTCCATAAATTTTAGGAAAAAATGTCTCTTCAAGGGTTAGTAACATTTTTAATTGGTTCTTTTTTTTATTGTTATTTTATTTTTTTTAAGTTAATTGTTACAGTTAATCATGATAAATGTAAACTCTATATTTCTATGATTAATAATTTTTGTATTCCAAAAAAATATATATCTATAATTTTTTTTTTTTGATTTAAAATTGAATTCTTCTTAATTATGCTACACTTGTGCTCTAATGCTTCATGACTTTTCTTTCTATTCAAATATTCCTTTTGTATTAGGATACCTAAAGAAGTCTGAAGAAAACAAAGAAAAGAATGACAAAGAGGTAAAGCTTTTGTAATTTGGCCTTTATTTATATATTTTACTAAAATGTTAAAACTTTATTTTTATTTTTAGTGGTAGGAAAAAATATTCATTGTTATCGTCACAACATAATATCACTCTTATATAATTATTAGATACATGATTAAGAAATATTTCTAAATTTCTCTCCCATATATCTGATTAATGGATACAAAAAACTTGGACTCTTAACAGAGATTGGAGAGTTACTACAAGCGAAATTACAAAGATTATTTTGAGTTTGTTGAAGGATCTTTGAAGAATAAGAGTGAACTTTCAGAGTCTGAGAAAGGTATTATTGAGTGGCTTAAGCGAAACAAATGAAACTTACCTTTTTCGTATTCATTTAGATTAACTTATCTATCAATTATTTCCTCTATTACAACCATTATATATAAAAATAGTTTAAATGTAGGCTGG

mRNA sequence

ATGAGCTCCATCGGCCAAAGCATTCTGATGGCTCTCGCCGTCACTCTCAACAAATTCGCTTCCTCAAACGTTCAATCTGTTCAGAAAAACAAACTCAACAGACCATCTACTGCCACCGCCGCCGCCGCCGGCGCTTCTCAAATTGGAAGAAGAGGCCTCCTCTTGTCTGCCATCGCCGCCGCCGCCGCCACCGCTCCTGAAGAAGCCGTCGACTCCAGAACCCAACTGCTAAAAAGTGTGCAGCATTCTTCTCTCTGA

Coding sequence (CDS)

ATGAGCTCCATCGGCCAAAGCATTCTGATGGCTCTCGCCGTCACTCTCAACAAATTCGCTTCCTCAAACGTTCAATCTGTTCAGAAAAACAAACTCAACAGACCATCTACTGCCACCGCCGCCGCCGCCGGCGCTTCTCAAATTGGAAGAAGAGGCCTCCTCTTGTCTGCCATCGCCGCCGCCGCCGCCACCGCTCCTGAAGAAGCCGTCGACTCCAGAACCCAACTGCTAAAAAGTGTGCAGCATTCTTCTCTCTGA

Protein sequence

MSSIGQSILMALAVTLNKFASSNVQSVQKNKLNRPSTATAAAAGASQIGRRGLLLSAIAAAAATAPEEAVDSRTQLLKSVQHSSL

Homology

[Close]

BLAST of Spg004109 vs. NCBI nr
Match: XP_038887440.1 (uncharacterized protein LOC120077574 [Benincasa hispida])

HSP 1 Score: 103.2 bits (256), Expect = 1.1e-18
Identity = 64/78 (82.05%), Postives = 69/78 (88.46%), Query Frame = 0


Query: 1  MSSIGQSILMALAVTLNKFASSNVQSVQKNKLNRPSTATAAAAGASQIGRRGLLLSAIAA 60
          MSSIGQSILMALAVTLNKFASSNVQSVQ+N+ N+P TATA     S IGRRGLLLSA+AA
Sbjct: 1  MSSIGQSILMALAVTLNKFASSNVQSVQRNQANKPRTATATT--GSTIGRRGLLLSAVAA 60

Query: 61 AAATAPEEAVDSRTQLLK 79
          AAAT PEEAVDSRT+LLK
Sbjct: 61 AAAT-PEEAVDSRTELLK 75

[Close]

BLAST of Spg004109 vs. NCBI nr
Match: XP_008455049.1 (PREDICTED: uncharacterized protein LOC103495319 [Cucumis melo])

HSP 1 Score: 80.1 bits (196), Expect = 1.0e-11
Identity = 53/78 (67.95%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 1  MSSIGQSILMALAVTLNKFASSNVQSVQKNKLNRPSTATAAAAGASQIGRRGLLLSAIAA 60
          MSSIGQSILMALAVTLNKFASSNVQSVQ+NK        A A  +S IGRR LLLS +A 
Sbjct: 1  MSSIGQSILMALAVTLNKFASSNVQSVQRNK--------ATATVSSPIGRRDLLLSTVAP 60

Query: 61 AAATAPEEAVDSRTQLLK 79
          A+  A   AVDSRT+LLK
Sbjct: 61 ASTAAAAAAVDSRTELLK 70

[Close]

BLAST of Spg004109 vs. NCBI nr
Match: XP_004136934.1 (uncharacterized protein LOC101214221 [Cucumis sativus] >KAE8645839.1 hypothetical protein Csa_017171 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 1.0e-11
Identity = 55/78 (70.51%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 1  MSSIGQSILMALAVTLNKFASSNVQSVQKNKLNRPSTATAAAAGASQIGRRGLLLSAIAA 60
          MSSIGQSILMALAVTLNKFASSNVQSVQ+NK      ATA A  +S IGRR LLLS +A 
Sbjct: 1  MSSIGQSILMALAVTLNKFASSNVQSVQRNK------ATATATVSSPIGRRSLLLSTLAP 60

Query: 61 AAATAPEEAVDSRTQLLK 79
          A+A A    VDSRT+LLK
Sbjct: 61 ASAAA-ASTVDSRTELLK 71

[Close]

BLAST of Spg004109 vs. NCBI nr
Match: KAG6588719.1 (hypothetical protein SDJN03_17284, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-11
Identity = 51/78 (65.38%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 1  MSSIGQSILMALAVTLNKFASSNVQSVQKNKLNRPSTATAAAAGASQIGRRGLLLSAIAA 60
          MSSIGQ+ILMALA+TLN+FASSNVQSVQ+NK   P T TA  + +S I RRGL+LSA  A
Sbjct: 1  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASSDIQRRGLILSAAVA 60

Query: 61 AAATAPEEAVDSRTQLLK 79
          A       AVDSRT LLK
Sbjct: 61 A-------AVDSRTDLLK 71

[Close]

BLAST of Spg004109 vs. NCBI nr
Match: XP_022148828.1 (uncharacterized protein LOC111017388 isoform X1 [Momordica charantia])

HSP 1 Score: 77.4 bits (189), Expect = 6.6e-11
Identity = 53/78 (67.95%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 1  MSSIGQSILMALAVTLNKFASSNVQSVQKNKLNRPSTATAAAAGASQIGRRGLLLSAIAA 60
          MSSIGQSILMALAVT+NKFASSNVQSV +N+        +AAA AS IGRRGLL SA+AA
Sbjct: 1  MSSIGQSILMALAVTVNKFASSNVQSVHRNQ--------SAAAAASDIGRRGLLFSAVAA 60

Query: 61 AAATAPEEAVDSRTQLLK 79
          A A      VDSRT+LLK
Sbjct: 61 AVA-----PVDSRTELLK 65

[Close]

BLAST of Spg004109 vs. ExPASy TrEMBL
Match: A0A1S3C176 (uncharacterized protein LOC103495319 OS=Cucumis melo OX=3656 GN=LOC103495319 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.9e-12
Identity = 53/78 (67.95%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 1  MSSIGQSILMALAVTLNKFASSNVQSVQKNKLNRPSTATAAAAGASQIGRRGLLLSAIAA 60
          MSSIGQSILMALAVTLNKFASSNVQSVQ+NK        A A  +S IGRR LLLS +A 
Sbjct: 1  MSSIGQSILMALAVTLNKFASSNVQSVQRNK--------ATATVSSPIGRRDLLLSTVAP 60

Query: 61 AAATAPEEAVDSRTQLLK 79
          A+  A   AVDSRT+LLK
Sbjct: 61 ASTAAAAAAVDSRTELLK 70

[Close]

BLAST of Spg004109 vs. ExPASy TrEMBL
Match: A0A6J1D554 (uncharacterized protein LOC111017388 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111017388 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.2e-11
Identity = 53/78 (67.95%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 1  MSSIGQSILMALAVTLNKFASSNVQSVQKNKLNRPSTATAAAAGASQIGRRGLLLSAIAA 60
          MSSIGQSILMALAVT+NKFASSNVQSV +N+        +AAA AS IGRRGLL SA+AA
Sbjct: 1  MSSIGQSILMALAVTVNKFASSNVQSVHRNQ--------SAAAAASDIGRRGLLFSAVAA 60

Query: 61 AAATAPEEAVDSRTQLLK 79
          A A      VDSRT+LLK
Sbjct: 61 AVA-----PVDSRTELLK 65

[Close]

BLAST of Spg004109 vs. ExPASy TrEMBL
Match: A0A6J1D574 (uncharacterized protein LOC111017388 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017388 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.2e-11
Identity = 53/78 (67.95%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 1  MSSIGQSILMALAVTLNKFASSNVQSVQKNKLNRPSTATAAAAGASQIGRRGLLLSAIAA 60
          MSSIGQSILMALAVT+NKFASSNVQSV +N+        +AAA AS IGRRGLL SA+AA
Sbjct: 1  MSSIGQSILMALAVTVNKFASSNVQSVHRNQ--------SAAAAASDIGRRGLLFSAVAA 60

Query: 61 AAATAPEEAVDSRTQLLK 79
          A A      VDSRT+LLK
Sbjct: 61 AVA-----PVDSRTELLK 65

[Close]

BLAST of Spg004109 vs. ExPASy TrEMBL
Match: A0A6J1JNZ7 (uncharacterized protein LOC111486201 OS=Cucurbita maxima OX=3661 GN=LOC111486201 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.4e-11
Identity = 52/78 (66.67%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 1  MSSIGQSILMALAVTLNKFASSNVQSVQKNKLNRPSTATAAAAGASQIGRRGLLLSAIAA 60
          MSSIGQ+ILMALA+TLN+FASSNVQSVQ+NK   P T TA  + +S I RRGLLLSA  A
Sbjct: 1  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPT-TATTSASSDIQRRGLLLSAAVA 60

Query: 61 AAATAPEEAVDSRTQLLK 79
          A       AVDSRT+LLK
Sbjct: 61 A-------AVDSRTELLK 70

[Close]

BLAST of Spg004109 vs. ExPASy TrEMBL
Match: A0A6J1EM63 (uncharacterized protein LOC111434615 OS=Cucurbita moschata OX=3662 GN=LOC111434615 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 9.3e-11
Identity = 52/82 (63.41%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 1  MSSIGQSILMALAVTLNKFASSNVQSVQKNKLNRPSTAT----AAAAGASQIGRRGLLLS 60
          MSSIGQ+ILMALA+TLN+FASSNVQSVQ+NK   P T T    A+ + +S I RRGLLLS
Sbjct: 1  MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLLLS 60

Query: 61 AIAAAAATAPEEAVDSRTQLLK 79
          A  AA       AVDSRT+LLK
Sbjct: 61 AAVAA-------AVDSRTELLK 75

[Close]

BLAST of Spg004109 vs. TAIR 10
Match: AT1G49975.1 (INVOLVED IN: photosynthesis; LOCATED IN: photosystem I, chloroplast, thylakoid membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre subunit N (InterPro:IPR008796); Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.1 bits (118), Expect = 1.0e-06
Identity = 38/78 (48.72%), Postives = 50/78 (64.10%), Query Frame = 0


Query: 1  MSSIGQSILMALAVTLNKFASSNVQSVQKNKLNRPSTATAAAAGASQIGRRGLLLSAIAA 60
          MSSI QSILMAL VT+NK+ASSNVQ+V++N   R S      A  + +GRR +L S+ + 
Sbjct: 1  MSSISQSILMALTVTVNKYASSNVQAVRRNDTKRHS----LTAPPADLGRRNILFSSTSF 60

Query: 61 AAATAPEEAVDSRTQLLK 79
           AA     A+ S  QLL+
Sbjct: 61 IAA-----ALTSSDQLLQ 69

The following BLAST results are available for this feature:

BLAST of Spg004109 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887440.1	1.1e-18	82.05	uncharacterized protein LOC120077574 [Benincasa hispida]	[more]
XP_008455049.1	1.0e-11	67.95	PREDICTED: uncharacterized protein LOC103495319 [Cucumis melo]	[more]
XP_004136934.1	1.0e-11	70.51	uncharacterized protein LOC101214221 [Cucumis sativus] >KAE8645839.1 hypothetica...	[more]
KAG6588719.1	1.3e-11	65.38	hypothetical protein SDJN03_17284, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022148828.1	6.6e-11	67.95	uncharacterized protein LOC111017388 isoform X1 [Momordica charantia]	[more]

BLAST of Spg004109 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg004109 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C176	4.9e-12	67.95	uncharacterized protein LOC103495319 OS=Cucumis melo OX=3656 GN=LOC103495319 PE=...	[more]
A0A6J1D554	3.2e-11	67.95	uncharacterized protein LOC111017388 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1D574	3.2e-11	67.95	uncharacterized protein LOC111017388 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1JNZ7	5.4e-11	66.67	uncharacterized protein LOC111486201 OS=Cucurbita maxima OX=3661 GN=LOC111486201...	[more]
A0A6J1EM63	9.3e-11	63.41	uncharacterized protein LOC111434615 OS=Cucurbita moschata OX=3662 GN=LOC1114346...	[more]

BLAST of Spg004109 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49975.1	1.0e-06	48.72	INVOLVED IN: photosynthesis; LOCATED IN: photosystem I, chloroplast, thylakoid m...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg004109.1	Spg004109.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
cellular_component	GO:0009536	plastid