Spg003960 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg003960
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Locationscaffold4: 1194814 .. 1204444 (+)
RNA-Seq ExpressionSpg003960
SyntenySpg003960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCTTCTAATCTCGAGGAGGATGTCAATTCACCAAACTTCTTGCTATCGAATATCTGTAATCTTGTATCGATCCGCCTTAATTCAACTGACTTTGTTCTCTGGAACTTTGAATTATCTTCCAATCTCAAGGCTCATAAACTATTTGGATTTGTTGATGGATCCAATCCTACACCTGCACAATTTCTTTCCTCCGCTTCGTCTGAGTCCTCAACTTCTAGTGATTCTCCGACTATTACTCCACCTCAAACTCGGAACAATCCAAAGTATGAGGACTGGATTGCCAAAGATCATGCTCTCATGATGTTGATCAATGCAACATTGTCTCCTGTTGCCCTATTAAGAGGCATCGTGATTATAGTGTTTTTAGATACAAGGCTCGTCCTGTGGCTAAAGGTTATCATCAAGAAGAAGTTCTTGATTATGATGAAACCTTTAGTCCTATCATTAATTAAAACCAACCGTGCGTATCATTTTATCCTTGGCTACTCAATTTGGTTGGTCATTATGTCAACTTGATGTTAGAAACAATTTTTTTTCATGGTGAACTAATAGAGGAAGTTTATATGCAACAACCTCAAGCCTTTTTTGATGCTCAGTATCTTCATTATGCTTGCAAATTATATAAATCACTCTATGGTCTTAAGCAAGCACCACGTGTTTGGTTTGAATGTTTTACCTTCCATCTTCTTACTCTTGGTTTTGTTGCTTCATTGCCTTATTCCCCCTTGTTTGTTCGAGCTGTTGATGGTTCTATTACATATTTGCTTCTATATATGGATGATATAATTGTTACTGGCATTGATCCCATTTACATTAATCATTTGATTGCTCAAGTGCAAATTTGATATGACTGATCTGGGATCCTTGAAATTTTTTGTTGGTTTGGAAATTATCGTACTTTTGCAAGCATATTTCTCAATCTAAATATGCTTGAGACTTTCTCGTTTTGGCATGGTGGTTGCTAAGGCTTGTTCAACCCCTATTGCCTTGCATATGCCCTCTGATCTTGGTGATGTTTGTTGTTCTGAGGATGGTTCAAACTATCATGCTATTATTAGGGCTCTTCATTATTTGATGTTTACACGTCCAGATATTACGTTTGCTATTAGCAAACTATCTTAGTATATGCATTCTCCATATTCTGCTCATTTGGTTGCTGCTAAGAGAGTGCTTCGATACATAAATGGCTCTCTTGGCTCTGGCATTGTTTTTCGTAAGAGTGATACTGATGCTTTTCTATTGACTGCCTTTTTGGATTTCGATTGGACAGGTGATTCTCTTGATCACCACTCTACATCTAGTTATGGTGTATTCTTCGATTGTAATCCAATTTCTTGGTCTACTACAGTCTCTAGTAGTTCAACTGAGGTTGAGTATCGGGCCTTAGCGTGTATTGCAGCTAAAGTTTTCTGGCTTCCTCAACTTCTTCAGGATCTTCGAATTTATGGTTCTCGGCCTCCTTTATTACTATGTGCCAACATGTATGCCATTCAACTTGCTAAAAATCATGTTTTTCACGGTAGAACGAAGCATGTAGAAATTGATTTCCATTATGTTCGTGAACGGGTTGTTCGAAAAGATATACAATTACAGTTTTTGCCAACAATCAGTTAGCTCGCAAATATGTTCACTAACTCATGGCTTAGTTTGTCTTTCGTTTAAGGGTCGATATTAAGTGTATTAAAAAGATTCTGTTATGTGAGCTTTTTATTCTATACATCAGGATGTATAGTTTAGTTAATCTTCCTACTATCAGATTGTGTATTTATATATTGTAATTGTTCATTATCTGGCATCAACGAGAATATCACTTTTCACAACGAGTGAAAAGTTTTAATTAGAAAGGTTTAAGGAAGATATACATTGGATATGTACCAAGTGATGTTTGGTTCCTCGTTAGATTCTATGTTTTTCTTCGGACTTCGATGACAAAGTCGTTTTGTAGTTATACTTTAGGTCTTATTTTGTATTGGAGGCCCTTTTGATAGTTTGTCTCTTCTTGTGGGCTATTTTTTTTTGTATGTCCTTGTATTCTTTCTTTTTTTTTTCTCAACGAAAGTTGTGTTTCTTATCAAATCCGTATCAAAGTTGTTTGATCTTCAAAATGGATCTAGAGCAGAGGATGTAAACAAAAAGAACAAATAGTGGAAACAAGATAGAAATTGCAAGAAGGAAGTGAATCAAATTGAGTTGTGATGCATTGAAATGAAAAACTTACACGAATTTATAGGAAAGTAAAATGGACACCCACTAACCCACTAACCTTGAAAATCTCTTCAATCAACCTTACTAAGTCACATCCCTCCAAATTAGAAGCCACTATCCTAAATAAATGCCACTAACCATTACTTTCTACACAAGTAAATTAGCTAAATCAAACTACTTGCCTACCAAGTTTGCACTAATTTTAACAGAGGAAAATATTATTGGAGATGTGATCAACGTTAAAGAAATTGGAAAAAGAGATGAAAGGAAATTGAGTACAACTAAGAAACTGCACATCAAATTGGAGAAAGGAAGAACAAGAGGAAAATAAACTAAACAAATGAAAAATGTAAGCAAAAGAAAGGTTGAAATTCCAAGGCCCGAGCAACTCAAATATAGAAAGGTTTCTTTTTAATTATTCTTTAGGTTTTTTTTTATCTTTTGAACTAGAAACCTTTTTTTTATTATTATTTTTTATAGTTAGGGTTGGCTTTTTTTGATACACTACTTCTCTCTATCCCTTTTGTATTCTTTCATTTCCTTTCCATGAAAGCTCAGTTTTTCTTTAAAAAAAAACTTAAATAAGAAAGAATATAGAAAATTTAAAAGTAACCAAAAGAATAAACAAACATATTGAGAGCATCGAAAGGGAGCGTTACTGTGTCAATTGAGTCATGAAAGATGGAAAAAAGTCTCAAATTAGGTCAATGCAATAGAAAGTTGATATCGGATGAAGCACAATCCTCAAGAATTGGTGGCACAATTAAGGAGCTTAAAGTTTGAATCAATCGTTGGACATCAAAAGTCGATTGAAGACGACACTCGCGTAAGTGAAACCAACAAACTCTTTGAGCTCAATCAAGCAATGGGATTCAAACCTTCAAATTTGATCATTGATAAGGAGGATTTGGGTTCAAATTCATCGGTCGTTATTTATTTGGAAAACAAATCAGTTCTCTCATCACCGACAATCAAGAATTTGGAGTCGGTGAATCTTTAGCCCTTGTTTAATGAGGAGGGGGAGGATGTCGGAGCTTACTATTCAAATGGTGAACTAAGCATTGAAGATTTGGTGGAGTCGTCGGAGGTTCAATTTGTGAATAAGTCTATGGGGTTCTACTCATCCATTAATGGTTCAACTAAGTCATTTTCTCCATATTTTTCTGTTCCTCAAACTATAGTGGTTGAGACTCCTTTGACTATCACAAGGGTGCAACAGGAGTATCCAGGCTCTGAGGGACCTTCTCATTTGCTTATCGAGGTAAACTTGTTGGGTTTTGTGTCCTAAAACTCATGGTTTGTAATTTTTATGCTTATCTCTTGTTCGCAATAAAGATGTTATGGTATTATTTAGTGAATTTCTTGTTTATATAACCTAAATCCTATAGATTAAAGATCCTTGGTTATAATATGAATACTCGAACTATACGTACAAACATAAACATGGATCAAGTTCTAGTATATAACCAAAATGGTCTATAGTATATGGATAAGGAGGTTGGGTACCTTATCTTCGGAACACAATTGATGCGACCTACTTTGCATTGCACATAAGGAAAACGATGTGATCCTGGATCGTTCATGTGAAGACATGCGAGTAGGGGCATCTTGTGCAATGAGTTTGCACAAGACCGGACCGAGAGATGAGTCACTCTTACTTTATAAAGTCGTTTACTGATAAGACTGATTATTTCATACGATGACCTAGGTAACTCGATCTTAATCCTGAGCTAACTATGAACTCTTGTTTGTTCAGGATTCTCCTTTGGTTTGCACGGGTGAGAGTGGCCCAACATCGCCGACTCAATAAGCCTACCATTTTGGGGATAAGACTGGATATATAGTTGGGGACATAGTCCTGCAAGATGGAATTCACTTCTACGCGTATTAGGGATAGTAGAAAAAGGTTGTTCCCTTAAAGTACTGACTCCGGGACTTGAACAAGGGGTCTCCCCCTCGCATTGGCCCGACAGAGACTCAGTTTGTTGGTTATATCACAAACCAATTGTTCATTAGAGGATAAAGAAGTGTTATAGGGGTAAAACGGACATTTGACCTAGCTATAGTTACGAACAACCTGTGAAGGATCGACTTACTAATCATGGTTATATCGAGTGGACAGAAACATATCTACAGTGAGGGGAGTGCAACTACTAGGCTATAGTAGAGTGACCTGGTAGTTAACGAATGTTGGTTAAGGTTAATGAGTTTAACCGATTAAACCTTCAATAATTGGAGCCCATGATCTGTAGGTCCATTAGGTCCCCTTGCTAGCTCGTATAGGAACAAACCTTGGAACAATATGATGGAAAGAATTCGAATTGCTCAAATTCAATTTAGGGATTATATCGGTCATATTGGATATTACCGACACATTGGTTTAATTTTGAATTAAACCTAAATTTGAGTTAGACATATTTAAATATGATTTAAATATCGAGCATGTGAATAGGAATTCATGTTTGGGAAACTACATTTCGAATATGATCGGGATTGGTTGCAAAATAATAATTTAATATTTGATATTAAATTAATATAATTAATTAATAATTATTTTAAATTAATTATGAATTAATTTTGAAAATTGAAATTCAAAATTAAAATTAGAATTTCATATTATTAATTAATTAACTAAAATTAATTTCAATTTGAATTTGGAAATTCAAAAAGAAATTAATTTTAGGAGGTGGAGTGCATGGTGACTAAACCCATGCACTCCTCCTCAATTAGCCACCAAATCCCACTTAATTGAAGCTTGTCTTGCTGTCTAATTTTGGGGCTTCAAGAGTGCATGATTTCCTTTTTAGATAGAGGAAGAATTGCTGAAGAAACTCACTGAAATGTTTAGTATTATGCTGCCAATTTAGCTTCTCAAACCCAAAAGCTCAAAACTCTTCAAAGCTTGAAATCCAAGCTCATTTCCTTCCAAATTCCATCAGTAGAGGATCCCACAATCCGTTCCAAGGCCTGAGAATAGCAATGAAGACATTTGTGGTGGTTCGTGATCAATTAGTGAGAAGAAACAACCAAGCAATCGGTCCAATTTTGAGCTACACAAAGGTTGGTACTCAAAACTTTGTTTTTGAACTTATGAACAGCATGCTTTGTATGATCAAATTGATGTTATTATGTGCCTAAGATCCAAAATTGCTTCCGCATGTTAGATATTAACACCTTCAAAACTTTGATAGATTTCCTATCCAGGTACATTTTCTTTCCTTTAATCTTTCTCCTTCCAATTCAGGTTTAGGTGAAGGGAGAGGGTTTGTCTTACCTAGGTAACTTGTCATATCCTATATCATTTTTTTAGGTGTGCCTCCTGGGGTAGGAGGCAACTGGGCTTTCTCCTTCTACTGTGTTTGTTAATTCTTTTCCTTTCTGTGGAAGTGATTTGCCTCATCCCACTATTTACTCATCTGGAGAGACAGATTCAACTTTTGCTTCTTTCTCTTATGTCTCTAGTAGTCGGGTCAAGAGGAGTAGTCAATTGTTTAGTGGAGGGTTAGTAGTGGGAGACTCTTTATTCTCAAGTAATCCTACACAAGGTTCTTCATTTAATGGGGGTGTCATTGGTAATTAGCATTTTGGTTGGTCGCCCTTGCTTCTATTGGTATCAACGCGATCTTGCCTAAGGATCTTCATTCAGTTCCGACCACCTCAGGTAAGAAAGGTAAGGTAAGGGTTCTAGCAATGGTGAAAATGAATTGAAGAAAATGGTTAGAGAGCTTAGAAATTTGACTAGTTCAGTGAACTATGATATGAAGAAAGTTTTTGTGGAATTCAGAGAGTCTGAATGTAGTTATCTGATGAATGTGATGTACTGATGAGGCTTGGGGGTAGAGGGATATACGAATTCTTGTTGAGGATGTTTTATCCCATAAGAATCTAGATATTGTTGTTTTGTTAGAAACTTAATGACAGAGGTACTGTCTTGTTTTTGTAAGAAGTCTCCAGGGCAGGAGAAGTATGGAGTGGGCATGCCTTGAATTCATAGGGGCGGGCCGATGGTATCTTTATTTTGTGGGATGGTAATTCAGTTACTCCCCTAGAGGTGGTCAAAGAAGTGATTTTAATCTCTATCTCCTTTGATATTCCTGGCTTTGGGATGGGTTGGGTCTCGGGAGTGTGTGGTCCCTAAACCCTGAGGTAGAAAGCTTTTGGAATGAGTTAGTTGATACGTTCAGTCTTTGTGGATCGTGTTGGTGTTTAGTGGGTTATTTTAATGTGATGCATTATTCCTCTAAGAATGCTTCAAGGGGTAGGACAACTTGAATTATAAGACAGTTTAATGGGTTTATTGGGGGTTGTAGCCTCGTTTGGTGAATGGGAAGTTCACTTGGGCTAATAATAGGGTTGCAGTCGTATTGGCAAATGTTTGTTATCTACAAGGTGGTTGGATACTTTTCTCATTCTGTTTGGTGTTCTATTTTTTAGGTGTTTGACTTGTAGTTTGCTAAACACAGGTCTTTGTGAGATGCTTAAGAAGTTCTTCCTCATTCGTTGTTTCGAGAGAAAGGGAAGTGTTTATGGTAGGCATGGATTTGTGTTGTCCTATGGGATTTGTGGGGTGAGAGAAATAACAGGACTTTTTAGGGGCCTTGATAGGAATCCAAGTGAAGTTTGGTCCATTGCTAGATTTCATGCTTCTCTGTGAACGTCAGTTACACGTTCATTTTGTAATTATTCTATAGGCCTATTTTACTCAATTAGAGCCCTTTTCTGTATTAGGGTTTCCTTTTGTGGGCTTGATTTTTATTTGGATGCCCTATTCTTTCTTTTTTTTTTTCTCAATGAAAGGTGGTCTTTTATCCAAAAAAAAGGGTGGTTGGACGCTTTTATGTATGTAAAACAGTTGTTCGACCCGCGAGTCACTTTAGATCATCTGTCAATTTTTCTTGCCTTATGTCCCTAAAGGTGGGGACCCTTTATTTTAGATTTGAAAACAGGTGGTTGGACCATCCGTCTTTTAAATCCTCTTTCTCGACTTGGTGGAATATAGAGGTCCCTAGAAATTGGAAAGGATACCGCTTTATGAGGAAATTGAGGCGCTTAAAAGTGTCTTAAGAAATTGGAATTGATAGATGGTTTTGGATATCAAACTCAACAAACAGGGTAAAACCAAATTTATTGATGATCTTGAAGAAGAGGTCTAGTTGGAGGTGGACTTAAGGGAAGAACGCTTAGCCCTTAAAATGGAGTTTATGGAGTTGGTTTCTTTCACAAAGTGGTGAGTGGTAGAAGAAAGCAAAAAAATTATGTGCTCTCTAGAGAACAACAGGGGGAAACAAATTAAAGGGGATAATGAGATGGAGGAGGAGGTTTTCTCTTTCTTCACTCATTTTTGTGCTCCTCATGTGGCTCCCAGACCTTAAGTTGTTGGATTGGATTGGAATCACATTTTTGGAAGTGAAAAGAGGGGCTTGGACTCTCCCTTTTCTTTGGATGAAATCAGAAAAGTGGTCTTTGATTGTGATAGGAACAAGGCCCTTAAGCCTAATGGTTTTTTCATGGTCTTCTTTTAGGACAATTGAGAGATTATTAAGGAGGATTTGATGTGGGTTTTTAGGGGGTTCTTTGCAAAGGTCATTTTGGATAGCACTTTGAATGAAACCTTTGTTTGTCTTATCCCTAAAAAGGAAAAAGCAAATAGGATTAAGGATTTTAGACTCATTAGCCTTATCACAAGGGTGTACAAGATCATTACTAAGGTGTTAGCCAACAAACTAAAAAAAGTCATTCTTTCGATGATTTTTGAGGTCCAAGGTACTTTTATTGGAGGAAAGTAAAATCTGGACTAGTTTTTATTACCAACGAGGCTATTGAGTATTATCAGTGGTGTGGTAAAGAGGGAGTTATTTTTAAGAATGACTTTGAGAAAGCTTATAACCATGTGGATTGGAACTTTCTGGTTAATGTTCTCGAGAAGAAAGGTTTGGGTTATTAATGGAGATCGTCAATGTGGAGTTGCATTGGTCCAGTATTCCATCCTCATTAATGGCACACTCAGGAGGAGAATACGAGCTACGAGATGCCTCAGACAAGGGGACCCCTTTCTCCATTTTTGTTTTTACTAGTGGTGGATGTCCTTAGTAGGATTGTTTTTAAGGGAGTGGAAAGAGATATTATCGAGGGATTTGAAGTAGACTTGGAAAAAGTTTCCCTGTCTCATCTTCAATTCGTTGATGATACTATCTTCTTATGCTCTAGCAATGAGGAGTCCTTCCTTATTCTAAACCACATTATAGGTTTCTTTGAGGACTTATTGGGGCTTAAAATCAATAGGAGAAAATATCAAATATTGGGCTTGAATTGTGATCCTGTTATGGTGTGTATAGGTGGGCGAATTTGGTGGGCTGTTGTGAGGTTGGTTCCTTTCCTTCATCACTCAGGCTTCCTCTTGGTCATAACCCAAGAACTATCATCTTTTGTGATCCTACCATAGAAAAGGTTCGTAAAAGATTTATTTCTTGGAAACGAAGCTTTTTCACTTAGGGTGGTAGATTGAACCTCATCTATTGCGTCCTAAGTGGTATGCCTATTTATTTTTCTCCCTCTTTAAAGCCTTTGGGGATGTGTGCAATTCATTAAAGAAGCATGTGAGAGATTTTCTATGAGAGGGGATTGAGGAGGGGAGAGGTACACATGAGTTGGGAGACAGTGGGAAAGCCTATGAACCTTTGGGGTTAGAGTTCAGGAAGTTAGGGACTCGTAACAGAGCCTTGCTGCCTTTGAAGGTTCCCTCTTGAATTTGTTACCTTTTGGTTAGAATTATTGTGAGTAAATATGATCTTCATTCGTTCAAGTGGGTACCGGGTGATTTCAAAGGCACTTATGGAAATCCTTGGAAAAACATCTCTACTGGGCTCCCTTTTTTTCTCTTTCCTAGTCTAGTGTTCTGTGGGTGATAGGAGGAATACTAATTTTTGGGAGGATAAGTGGGTGGGGAATAGTCCCCTCTGTGCCACGTTCCCCCCATTATATCATTTGTCCTCCATGAAAAATTGTTTCGTGGCTACTATCTTTAGTCCATTAGGGAGCTCCCTTTCCTTTTTGTTCAGTTTTCGTCGTCTATCGTTCGATATAAAAACTGTGGATATCTTGGCTCTCTTATCTTTAATAGAGGAGGTTGGTCTTAGACCGAAGGGGAGGGATGTTTGCTTTTGGGGTCCAAACTCCACTGGGGCTTTTCTTATAGCTCGTTTTTTAGTGGTTGCTAAATTCCTTTTCGGTTAGTGAGTTGGTTTTTTCACGTCTGTGGAAGGTGAAAGTTCCAAAAAAGGTTCAATTCTTTGTCTGACAGGTTATTCATGAAAGGATTAATACTTTTGATAGGCTTACAAGAAAGATGCATTCATTGATTGGATCGTTTTGCTGCATCCTTTGTTGGAAGGCGAAGGAAGATCTCGATCACTTGCTTTAA

mRNA sequence

ATGGCGTCTTCTAATCTCGAGGAGGATGTCAATTCACCAAACTTCTTGCTATCGAATATCTGTAATCTTGTATCGATCCGCCTTAATTCAACTGACTTTGTTCTCTGGAACTTTGAATTATCTTCCAATCTCAAGGCTCATAAACTATTTGGATTTGTTGATGGATCCAATCCTACACCTGCACAATTTCTTTCCTCCGCTTCGTCTGAGTCCTCAACTTCTAGTGATTCTCCGACTATTACTCCACCTCAAACTCGGAACAATCCAAAGAGTATCCAGGCTCTGAGGGACCTTCTCATTTGCTTATCGAGAAACATATCTACAGTGAGGGGAGTGCAACTACTAGGCTATAGTAGAGTGACCTGCTTCTCAAACCCAAAAGCTCAAAACTCTTCAAAGCTTGAAATCCAAGCTCATTTCCTTCCAAATTCCATCAGTAGAGGATCCCACAATCCGTTCCAAGGCCTGAGAATAGCAATGAAGACATTTGTGGTGGTTCGTGATCAATTAGTGAGAAGAAACAACCAAGCAATCGGTCCAATTTTGAGCTACACAAAGGAGGCAACTGGGCTTTCTCCTTCTACTGTGTTTGTTAATTCTTTTCCTTTCTGTGGAAGTGATTTGCCTCATCCCACTATTTACTCATCTGGAGAGACAGATTCAACTTTTGCTTCTTTCTCTTATGTCTCTAGTAGTCGGGTCAAGAGGAGTAGTCAATTGTTTAGTGGAGGGTTAGTAGTGGGAGACTCTTTATTCTCAAGTAATCCTACACAAGGTTCTTCATTTAATGGGGGTGTCATTGTTACTCCCCTAGAGGTGGTCAAAGAAGTGATTTTAATCTCTATCTCCTTTGATATTCCTGGCTTTGGGATGGGTTGGCCTCGTTTGGTGAATGGGAAGTTCACTTGGGCTAATAATAGGGTTGCAGTCGTATTGGCAAATGTTTGTCTTTGTGAGATGCTTAAGAAGTTCTTCCTCATTCGTTGTTTCGAGAGAAAGGGAAGTGTTTATGGTAGGCATGGATTTGTGTTGTCCTATGGGATTTGTGGGTTGGAGGTGGACTTAAGGGAAGAACGCTTAGCCCTTAAAATGGAGTTTATGGAGTTGGTTTCTTTCACAAAGTGGTGGGCGAATTTGGTGGGCTGTTGTGAGGTTGGTTCCTTTCCTTCATCACTCAGGCTTCCTCTTGGTCATAACCCAAGAACTATCATCTTTTGTGATCCTACCATAGAAAAGGGGATTGAGGAGGGGAGAGGTACACATGAGTTGGGAGACAGTGGGAAAGCCTATGAACCTTTGGGGTTAGAGTTCAGGAAGTTAGGGACTCGTAACAGAGCCTTGCTGCCTTTGAAGGTTATTCATGAAAGGATTAATACTTTTGATAGGCTTACAAGAAAGATGCATTCATTGATTGGATCGTTTTGCTGCATCCTTTGTTGGAAGGCGAAGGAAGATCTCGATCACTTGCTTTAA

Coding sequence (CDS)

ATGGCGTCTTCTAATCTCGAGGAGGATGTCAATTCACCAAACTTCTTGCTATCGAATATCTGTAATCTTGTATCGATCCGCCTTAATTCAACTGACTTTGTTCTCTGGAACTTTGAATTATCTTCCAATCTCAAGGCTCATAAACTATTTGGATTTGTTGATGGATCCAATCCTACACCTGCACAATTTCTTTCCTCCGCTTCGTCTGAGTCCTCAACTTCTAGTGATTCTCCGACTATTACTCCACCTCAAACTCGGAACAATCCAAAGAGTATCCAGGCTCTGAGGGACCTTCTCATTTGCTTATCGAGAAACATATCTACAGTGAGGGGAGTGCAACTACTAGGCTATAGTAGAGTGACCTGCTTCTCAAACCCAAAAGCTCAAAACTCTTCAAAGCTTGAAATCCAAGCTCATTTCCTTCCAAATTCCATCAGTAGAGGATCCCACAATCCGTTCCAAGGCCTGAGAATAGCAATGAAGACATTTGTGGTGGTTCGTGATCAATTAGTGAGAAGAAACAACCAAGCAATCGGTCCAATTTTGAGCTACACAAAGGAGGCAACTGGGCTTTCTCCTTCTACTGTGTTTGTTAATTCTTTTCCTTTCTGTGGAAGTGATTTGCCTCATCCCACTATTTACTCATCTGGAGAGACAGATTCAACTTTTGCTTCTTTCTCTTATGTCTCTAGTAGTCGGGTCAAGAGGAGTAGTCAATTGTTTAGTGGAGGGTTAGTAGTGGGAGACTCTTTATTCTCAAGTAATCCTACACAAGGTTCTTCATTTAATGGGGGTGTCATTGTTACTCCCCTAGAGGTGGTCAAAGAAGTGATTTTAATCTCTATCTCCTTTGATATTCCTGGCTTTGGGATGGGTTGGCCTCGTTTGGTGAATGGGAAGTTCACTTGGGCTAATAATAGGGTTGCAGTCGTATTGGCAAATGTTTGTCTTTGTGAGATGCTTAAGAAGTTCTTCCTCATTCGTTGTTTCGAGAGAAAGGGAAGTGTTTATGGTAGGCATGGATTTGTGTTGTCCTATGGGATTTGTGGGTTGGAGGTGGACTTAAGGGAAGAACGCTTAGCCCTTAAAATGGAGTTTATGGAGTTGGTTTCTTTCACAAAGTGGTGGGCGAATTTGGTGGGCTGTTGTGAGGTTGGTTCCTTTCCTTCATCACTCAGGCTTCCTCTTGGTCATAACCCAAGAACTATCATCTTTTGTGATCCTACCATAGAAAAGGGGATTGAGGAGGGGAGAGGTACACATGAGTTGGGAGACAGTGGGAAAGCCTATGAACCTTTGGGGTTAGAGTTCAGGAAGTTAGGGACTCGTAACAGAGCCTTGCTGCCTTTGAAGGTTATTCATGAAAGGATTAATACTTTTGATAGGCTTACAAGAAAGATGCATTCATTGATTGGATCGTTTTGCTGCATCCTTTGTTGGAAGGCGAAGGAAGATCTCGATCACTTGCTTTAA

Protein sequence

MASSNLEEDVNSPNFLLSNICNLVSIRLNSTDFVLWNFELSSNLKAHKLFGFVDGSNPTPAQFLSSASSESSTSSDSPTITPPQTRNNPKSIQALRDLLICLSRNISTVRGVQLLGYSRVTCFSNPKAQNSSKLEIQAHFLPNSISRGSHNPFQGLRIAMKTFVVVRDQLVRRNNQAIGPILSYTKEATGLSPSTVFVNSFPFCGSDLPHPTIYSSGETDSTFASFSYVSSSRVKRSSQLFSGGLVVGDSLFSSNPTQGSSFNGGVIVTPLEVVKEVILISISFDIPGFGMGWPRLVNGKFTWANNRVAVVLANVCLCEMLKKFFLIRCFERKGSVYGRHGFVLSYGICGLEVDLREERLALKMEFMELVSFTKWWANLVGCCEVGSFPSSLRLPLGHNPRTIIFCDPTIEKGIEEGRGTHELGDSGKAYEPLGLEFRKLGTRNRALLPLKVIHERINTFDRLTRKMHSLIGSFCCILCWKAKEDLDHLL
Homology
BLAST of Spg003960 vs. NCBI nr
Match: XP_022150845.1 (uncharacterized protein LOC111018892 [Momordica charantia])

HSP 1 Score: 97.4 bits (241), Expect = 3.5e-16
Identity = 50/84 (59.52%), Postives = 69/84 (82.14%), Query Frame = 0

Query: 2   ASSNLEEDVNSPNFLLSNICNLVSIRLNSTDFVLWNFELSSNLKAHKLFGFVDGSNPTPA 61
           +S+N ++D++SP FLLSNICNLVSIRL+STDF+LW F+L++ LKAHKLFGF+DGS   P+
Sbjct: 25  SSTNTKKDLHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVSAPS 84

Query: 62  QFLSSAS---SESSTSSDSPTITP 83
           QFL+S+S   S+ +T++  P I P
Sbjct: 85  QFLASSSETESQPTTTTSLPVINP 108

BLAST of Spg003960 vs. NCBI nr
Match: XP_022152754.1 (uncharacterized protein LOC111020396 isoform X4 [Momordica charantia])

HSP 1 Score: 95.9 bits (237), Expect = 1.0e-15
Identity = 49/85 (57.65%), Postives = 68/85 (80.00%), Query Frame = 0

Query: 1  MASSNLEEDVNSPNFLLSNICNLVSIRLNSTDFVLWNFELSSNLKAHKLFGFVDGSNPTP 60
          MAS  +E D+NSP FLLSNICNL+SIRL+ST+F+LW F+L++ LKAHKLF F+DGS+  P
Sbjct: 1  MASLCIENDLNSPIFLLSNICNLISIRLDSTNFILWKFQLTAILKAHKLFSFIDGSSTPP 60

Query: 61 AQFLSSASSESSTSSDSPTITPPQT 86
           +F+++++ ESS+S DS +   P T
Sbjct: 61 EKFVAASTLESSSSIDSASQMIPNT 85

BLAST of Spg003960 vs. NCBI nr
Match: XP_022152753.1 (uncharacterized protein LOC111020396 isoform X3 [Momordica charantia])

HSP 1 Score: 95.9 bits (237), Expect = 1.0e-15
Identity = 49/85 (57.65%), Postives = 68/85 (80.00%), Query Frame = 0

Query: 1  MASSNLEEDVNSPNFLLSNICNLVSIRLNSTDFVLWNFELSSNLKAHKLFGFVDGSNPTP 60
          MAS  +E D+NSP FLLSNICNL+SIRL+ST+F+LW F+L++ LKAHKLF F+DGS+  P
Sbjct: 1  MASLCIENDLNSPIFLLSNICNLISIRLDSTNFILWKFQLTAILKAHKLFSFIDGSSTPP 60

Query: 61 AQFLSSASSESSTSSDSPTITPPQT 86
           +F+++++ ESS+S DS +   P T
Sbjct: 61 EKFVAASTLESSSSIDSASQMIPNT 85

BLAST of Spg003960 vs. NCBI nr
Match: XP_022152751.1 (uncharacterized protein LOC111020396 isoform X1 [Momordica charantia])

HSP 1 Score: 95.9 bits (237), Expect = 1.0e-15
Identity = 49/85 (57.65%), Postives = 68/85 (80.00%), Query Frame = 0

Query: 1  MASSNLEEDVNSPNFLLSNICNLVSIRLNSTDFVLWNFELSSNLKAHKLFGFVDGSNPTP 60
          MAS  +E D+NSP FLLSNICNL+SIRL+ST+F+LW F+L++ LKAHKLF F+DGS+  P
Sbjct: 1  MASLCIENDLNSPIFLLSNICNLISIRLDSTNFILWKFQLTAILKAHKLFSFIDGSSTPP 60

Query: 61 AQFLSSASSESSTSSDSPTITPPQT 86
           +F+++++ ESS+S DS +   P T
Sbjct: 61 EKFVAASTLESSSSIDSASQMIPNT 85

BLAST of Spg003960 vs. NCBI nr
Match: XP_022152752.1 (uncharacterized protein LOC111020396 isoform X2 [Momordica charantia])

HSP 1 Score: 95.9 bits (237), Expect = 1.0e-15
Identity = 49/85 (57.65%), Postives = 68/85 (80.00%), Query Frame = 0

Query: 1  MASSNLEEDVNSPNFLLSNICNLVSIRLNSTDFVLWNFELSSNLKAHKLFGFVDGSNPTP 60
          MAS  +E D+NSP FLLSNICNL+SIRL+ST+F+LW F+L++ LKAHKLF F+DGS+  P
Sbjct: 1  MASLCIENDLNSPIFLLSNICNLISIRLDSTNFILWKFQLTAILKAHKLFSFIDGSSTPP 60

Query: 61 AQFLSSASSESSTSSDSPTITPPQT 86
           +F+++++ ESS+S DS +   P T
Sbjct: 61 EKFVAASTLESSSSIDSASQMIPNT 85

BLAST of Spg003960 vs. ExPASy TrEMBL
Match: A0A6J1D9L6 (uncharacterized protein LOC111018892 OS=Momordica charantia OX=3673 GN=LOC111018892 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.7e-16
Identity = 50/84 (59.52%), Postives = 69/84 (82.14%), Query Frame = 0

Query: 2   ASSNLEEDVNSPNFLLSNICNLVSIRLNSTDFVLWNFELSSNLKAHKLFGFVDGSNPTPA 61
           +S+N ++D++SP FLLSNICNLVSIRL+STDF+LW F+L++ LKAHKLFGF+DGS   P+
Sbjct: 25  SSTNTKKDLHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVSAPS 84

Query: 62  QFLSSAS---SESSTSSDSPTITP 83
           QFL+S+S   S+ +T++  P I P
Sbjct: 85  QFLASSSETESQPTTTTSLPVINP 108

BLAST of Spg003960 vs. ExPASy TrEMBL
Match: A0A6J1DFQ7 (uncharacterized protein LOC111020396 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111020396 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.0e-16
Identity = 49/85 (57.65%), Postives = 68/85 (80.00%), Query Frame = 0

Query: 1  MASSNLEEDVNSPNFLLSNICNLVSIRLNSTDFVLWNFELSSNLKAHKLFGFVDGSNPTP 60
          MAS  +E D+NSP FLLSNICNL+SIRL+ST+F+LW F+L++ LKAHKLF F+DGS+  P
Sbjct: 1  MASLCIENDLNSPIFLLSNICNLISIRLDSTNFILWKFQLTAILKAHKLFSFIDGSSTPP 60

Query: 61 AQFLSSASSESSTSSDSPTITPPQT 86
           +F+++++ ESS+S DS +   P T
Sbjct: 61 EKFVAASTLESSSSIDSASQMIPNT 85

BLAST of Spg003960 vs. ExPASy TrEMBL
Match: A0A6J1DIP4 (uncharacterized protein LOC111020396 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020396 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.0e-16
Identity = 49/85 (57.65%), Postives = 68/85 (80.00%), Query Frame = 0

Query: 1  MASSNLEEDVNSPNFLLSNICNLVSIRLNSTDFVLWNFELSSNLKAHKLFGFVDGSNPTP 60
          MAS  +E D+NSP FLLSNICNL+SIRL+ST+F+LW F+L++ LKAHKLF F+DGS+  P
Sbjct: 1  MASLCIENDLNSPIFLLSNICNLISIRLDSTNFILWKFQLTAILKAHKLFSFIDGSSTPP 60

Query: 61 AQFLSSASSESSTSSDSPTITPPQT 86
           +F+++++ ESS+S DS +   P T
Sbjct: 61 EKFVAASTLESSSSIDSASQMIPNT 85

BLAST of Spg003960 vs. ExPASy TrEMBL
Match: A0A6J1DGZ1 (uncharacterized protein LOC111020396 isoform X4 OS=Momordica charantia OX=3673 GN=LOC111020396 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.0e-16
Identity = 49/85 (57.65%), Postives = 68/85 (80.00%), Query Frame = 0

Query: 1  MASSNLEEDVNSPNFLLSNICNLVSIRLNSTDFVLWNFELSSNLKAHKLFGFVDGSNPTP 60
          MAS  +E D+NSP FLLSNICNL+SIRL+ST+F+LW F+L++ LKAHKLF F+DGS+  P
Sbjct: 1  MASLCIENDLNSPIFLLSNICNLISIRLDSTNFILWKFQLTAILKAHKLFSFIDGSSTPP 60

Query: 61 AQFLSSASSESSTSSDSPTITPPQT 86
           +F+++++ ESS+S DS +   P T
Sbjct: 61 EKFVAASTLESSSSIDSASQMIPNT 85

BLAST of Spg003960 vs. ExPASy TrEMBL
Match: A0A6J1DH48 (uncharacterized protein LOC111020396 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111020396 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.0e-16
Identity = 49/85 (57.65%), Postives = 68/85 (80.00%), Query Frame = 0

Query: 1  MASSNLEEDVNSPNFLLSNICNLVSIRLNSTDFVLWNFELSSNLKAHKLFGFVDGSNPTP 60
          MAS  +E D+NSP FLLSNICNL+SIRL+ST+F+LW F+L++ LKAHKLF F+DGS+  P
Sbjct: 1  MASLCIENDLNSPIFLLSNICNLISIRLDSTNFILWKFQLTAILKAHKLFSFIDGSSTPP 60

Query: 61 AQFLSSASSESSTSSDSPTITPPQT 86
           +F+++++ ESS+S DS +   P T
Sbjct: 61 EKFVAASTLESSSSIDSASQMIPNT 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022150845.13.5e-1659.52uncharacterized protein LOC111018892 [Momordica charantia][more]
XP_022152754.11.0e-1557.65uncharacterized protein LOC111020396 isoform X4 [Momordica charantia][more]
XP_022152753.11.0e-1557.65uncharacterized protein LOC111020396 isoform X3 [Momordica charantia][more]
XP_022152751.11.0e-1557.65uncharacterized protein LOC111020396 isoform X1 [Momordica charantia][more]
XP_022152752.11.0e-1557.65uncharacterized protein LOC111020396 isoform X2 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1D9L61.7e-1659.52uncharacterized protein LOC111018892 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A6J1DFQ75.0e-1657.65uncharacterized protein LOC111020396 isoform X3 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DIP45.0e-1657.65uncharacterized protein LOC111020396 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DGZ15.0e-1657.65uncharacterized protein LOC111020396 isoform X4 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DH485.0e-1657.65uncharacterized protein LOC111020396 isoform X2 OS=Momordica charantia OX=3673 G... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029472Retrotransposon Copia-like, N-terminalPFAMPF14244Retrotran_gag_3coord: 22..61
e-value: 4.8E-6
score: 26.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg003960.1Spg003960.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding