Spg003936 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg003936
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotran_gag_3 domain-containing protein
Location	scaffold4: 1319274 .. 1324648 (+)
RNA-Seq Expression	Spg003936
Synteny	Spg003936

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCTGAAATGCAGAAAGATCTTAATTCTCCTATTTTTCTTCTTTCAAACATCTGTAATCTCGTCTCAATCTGTCTTGAATTGTCAAATTTTATTCTCTGGAAGTTTCAATTAACTTCTATTCTCAAGGCGCACAAGCTATTTGGATTCGTTGATGGATCTTTGATGTCTCCTCCAAAAGTTCTCCTGTCTGAAGCACCTGGTTCTGAAGAAACTCAACCGAATCCGAAATTTGATGATTGGATCGCTAAGGATCATGCTCTCATGACGCTAATTAACGTCTGTCGCCGGCAGCTCTTGCATATGTTGTTGGATGCAAGATTTCAAAAGAGGTATGGGATGCTCTTGAGAAGCATTATTCTTCTACTTCGCGTACTAATGTTGTTAATTTGAAGTCCGATTTACAGTCTATCTCTAAGAAATCTATTGTCAATTGATTATGTGAAGAGAATTATGGAAATTAAAGATAAGTTAGCGAATGTGTCTTTTGTGGTTAATGATGAAGACTTGTTTATCTACACCTTAAATGGCCTGTCATCCGATTATAATACTTTCAAGACCTCACTACGTACTCGTTCACAACCTCCATCTTTTGTCAAATTACATGTTCTTCTAAAATCTGAGGCATCAGCTCTTGAGAAACAAAATCGTGTTGATGATTCTACTATTCAGCCTACTGCTATGTTAGCTAATGCCCAGTCTGGTGCTTCTCGAGGTCAAAATTCTGTTAATTCGTTTCGTGGACGGTCTCAAGGTCGAGGGCGTAATCAAGGTAGACTAGAGGTTGATCCTCCTTTTTTCCTTAAGGCAAAGGACATGGATCACTTTTTTCTCTTGTTTCTCCATTTTCCCCTTAATCGGCTACTTCAGGTCATGTTGTTTGTCATATTTGCCTTCGACCCGATCATTCAGCTTTGGATTGCTATAATAGGATGAATTATAGCTTTCAAGGAATGCATCCACCTGTTAAGAAATGTGTCTTGTGTGGAGACAAAACTTGAAGACTTCACTCTAACCTCTTGGAGCACAAGTAAGAAGGGCTTGGTGTGCATAGAAGAAACTCACCAAACTTGGTGTGCAAGGATGAAAATCACCACCTTGGTGTACAAGGAAGAATGAAGATGGAGCCTTGGGCATTAAGGCTCTCATTACCTATATATATGTGTGTTTGTCTTTTGAAGAGAGCAAGAAAAAGAGAGTGATCTTTTCTTCTTTTGTAGTGTGGGAGAGAGAGAGATAAGAGTGTTTCTCTTCTCGGGTTGAGGGTCTTTTCTTGTTGTTTATCCCAAGCTATCAGATTGTGATACTTGGTAGTCAATAGCCATTACTGGTCTATTGAGGGATAGGTTGAGGTGTTGTTCTTGAAGGCTTCTTGTAATCTCCCTGGAGTTTTAGTGGAACCTGCATCGATAACAGAGAACTGGACGTAGCCCACATTGGGTGAACCAGTATAAAACTCGGTGTCAATTTCTCTTCCCTTCTCTTTTATTCATTATTGTTCTTGTTGCTTAGAACTTAGGTTGGTTTATCTATTCTTCTAAGCTTTTAGTTTCAAATTATTTATTCTGCATTGTATTTGGAACCATAACCTGATCTAGGAATTGCGATAAATATATATTGTCTGAATTTGGTTGATCGAATTTAGATTGGGACTATTTTATCGCCTAACACCACCTGCACAACTTGCTGCTCTTGTGGCTTCTCACAATTCAATTTATTCTACTGTCAATCCTGTTACTTTAACTTGGTTGACGAACTTGGGCTGTAATGCTCATATCACTGTTGATCTAAACAATTTGTCTACTACATCTTAATACAATGGGATGAACAAGTTTCAGTTAGTAATGGTCAATCTCCCTCGATAACTCATCAAGGTAGTGGTACTCTCCATACATCTCAGTCTACCTTTTCTCTTTTAATCCTCATCCATGTCCCTACTATTGCTTCTAATCTACTTTATGTTCACCAACTATGTGTTGATAATAATTGTATCAAATACTTCTTCCTTATACCCTTTGGAATTGATACACATTGATGTATAGGGTCCTGCCCCTTAAATTTCTATTAATGGATACAAATACTATGTTGATATGTCTAAATACACTTGGTTATTTCCTATTGTTAGAAAGGCTGATGTCTTCTCTGTTTTTGTCAAGTTTAAGGCTCCTGTGGAGAATATATTTTCTACCAAAATCAAAATCTTACGCAGTGATGTGGCAGTGAATTTGTCAATCATCAACTAACCTATTTTCTCTCTTCTCATGGAATCCTCCATCAAAAATCGTGCCCTTATACACCTCAACAAAATGGCGTTGTCAAGCGTAAACATCATCACATTATTGAGGTTGTTCTTACTCTTATCTCTAAATATGCCTTACCTCTTCATTTCTGGACTTATGCCTTTAATATTGTTGTTTTTGTTATCAATCGCCTTCTTTCACCAACTCTTAATAATATGTCTCCTTTTGAATGTCTTTTCCAACGTTCTCCTAATTATTCTCACTTAAAGACTTTTGGTAGTACGTGTTTTCCTTTGCTTCGACCTTATAATGATCATAAACTTCAACCACGCACTTCTCAACATGTATTCCTTAGCTATCCTCTAGATTACAATCGCTATATTTGTTACAACATGAGCAGTGGAAAATTCCTAACCTTTCGTCATGTTCTCTTTGATGAAACTACTTTTCCATTTACTACTTCTTCTTGTTCTGTTTCCTCAAAACCCTCTTTGTCCTCTTATTCTCCTCCATTTTCTTTACTTCTCAAGGCCTTTTGGGTACCAAAATCCTTTGATGATGTTAATACTTTGGCTACTAACAATTCTACCTCTTCAATTTATGTTGATTCTGCCGCCTGCAGGTTTACATGAGCATTTATCTTCTGCAACTAATATTGTTGATCATTCTGATGTTGTTATTGCTCCCACAAACGTTGATGTTGTTATTGATTCTACTGCCCCTAATGTTACTTGTGATCAGCCAACATCTGGTACCCATATTACTTCTACTATTGGTACCAATACTACTAATGTTCCTCTTGTGCACAACAGTCATCCAATGCAGACTCATGGGAAATCTGGCGTAAATTTTTGTTGCTTCTGTCCAACAAGATAATCTTGAGCCCACATGTTTTTCTAAGGCTTCTCACTTACCTGTTTGGCAACAAGCCATGACTGATGAGTATGATGCTCTTATTAAACACTTGGGAGTTGTAGCCTTTACCTCCTGGTAAAACAGCTATCGATTGTAAGTGGGTTTATTGCATAAAGCGTAATCCAGATGGCAATATTGCTAGACATAAAGCTTGTCTCATCTCATTGCCAAAGGGTACCATCAAGAAGAGGGTATTGACTATGACGAAACTTTCAGCCCCGTTGTTAAAATGACTATTGTGTGTGTTGTTCTATCTTTTGCTACTCAACATGGTTGGTCTCTTGGTCAGCTAGACGTCAAAAATGCCTTGTTGCATGGTCATCTCCATGAGGAAGTCTATATGCATCAGCCACGAGATTTTGTTCATCCATCTTTTTCTAATTATGCTTGCAAGTTGTTGAAATCTCTATATAGTCTTAAGCAAGCACCAAGGGCTTGGTTTGAGTGTTTCACATCTCGTCTTTTGACTCTTGGTTTTGTTGCTTCTGTGGCTGGTTCTTCATTACTTGTTCGAATTCCTAATGGCTCAATTACTTATCCACTGCTTTATGTCGATGACATTATCCTTACTAGAAGTCATTCTTCATATCTAAATTCTTTAATGGTTCAACTTCGTGAAAAGTTTGATATGTCTGATCTTGGTTGTTTGAAGATTTTTCTTGGCTTGGAAGTCGATTATTCCAGCAAGGGCATATTTGTTTCTCGAACTAAATACACTTGAGATCTTCTATTTCGCTTTGGTATGGCGGGGCAAAGCCTTGTTCTACCCCTATGGCATTAAAAGCTTCTAATGATGATGGAACCATGTGTTCTCCTGAAGATGCTTCTCATTTTCAATCCCTTATTGGTGTTTTGCATTATTTGACTTTTACACGGCCGGATATTGCCTTCTCTATAAGTAAGCTCTCTCAATTTTTGCATCGCCCGATTGGGCCGATTCTGGTTCATCTTATTGCTGCCAAGCATATTTTGCGCTATCTTTTTGGTAGTCCTTCTACTGGTATTCTCTTTCATTGTAGTTCTACTAATATTTTTAAACTTCGTGCTTTTTTGGATTTCGACTAGGTTGGTGATTCTATTGATCGTCGATCAACTACTAGTTTTGTTCTCTTTCTTGGAGCTAATTCTATTTCTTAGCCTGCTAAAAAATAGAGTGTGGTGTCTCGTAGCTCCACGGAAGCTGAGTATCGCGCATTAGCTGCAATTGCTGCTGAGTTGTTTTGGGTTCAACAGCTCCTTCGTGATCTTCATATATTTCCCATCCACCTTCACAATGGTGTGATAATTCTTCGGCCATACAACTTGCTAAGAATCCGGTCTTTCATGGCCACATGAAACATGTTGAAATCGACTTCCATTTTGTTCGAGAACGGGTTGTGCACAAGGACATTCTTCTACATTATATGCCCACTCAGTTTCAAGTTGCAGATTTGTTCACAAAACCATTTACCTGTGATCGTCTTCAGTTTTTGAAGGCCAAACTCATGTCCTAAATGGTCATTCGTTTGAGGGGAGATATTTGAGGATTATTGTCTTATCTATTAATCTTGTATTGTCAGTGGTTAATTTGTGATTTGTTAATTAGTTAATTCTTTAGTTAAGTCCTGTCGGCTTATAAATACAATGCATCAGTATTCTTTTGAGCAATGTGAATGACATTTTCCTTCATTCTGTTAGAGGAAAGTTTCATAGCAAACGAGATAATCGGCAGACGGACAATCTTAATCATTTATCCCAAGTTCCCAACTATCCTTCCTCTCACAATAACTTCTCCACATAGTAGAATATTGTCTCCTAGTCCTTCCAAATCCTATAGTTCTCATTCGAATACTGTCTTGAATCTCGTCGCTCAGAACCGAAACGATTGCATTCACGCCTCCCAAAAACAAAAAACCAAGCAGTTCCTGTTTCCAATAACTATCAAACCAACCAAACAAACACAGACTACACCACAATCATCCATGGCGGTTGAAGAGAAGTAATAGAAGTAAGTTACTCACAGCATTCGAGGAACTGATACTTGGTAACGGAAGAGTTCCTGCGGGCAGAAAACTTGCCGAGCAAGCTTCGAGAGACTTTCTCGACGCGATCGTCCTCTTCGCTGAAATCGAATACGGCGAATCTCTTGCTTCCGCCGTCACCTTTTCCTCTGTCCTTGCTGCTTCTCGAGGAAGAGGGCTTGGAAGTCCGAGTCATACTGCCACTGGCATCGCTTAG

mRNA sequence

ATGGCATCTGAAATGCAGAAAGATCTTAATTCTCCTATTTTTCTTCTTTCAAACATCTGTAATCTCGTCTCAATCTGTCTTGAATTGTCAAATTTTATTCTCTGGAAGTTTCAATTAACTTCTATTCTCAAGGCGCACAAGCTATTTGGATTCGTTGATGGATCTTTGATGTCTCCTCCAAAAGTTCTCCTGTCTGAAGCACCTGGTTCTGAAGAAACTCAACCGAATCCGAAATTTGATGATTGGATCGCTAAGGATCATGCTCTCATGACGCTAATTAACGTCTGTCGCCGGCAGCTCTTGCATATGTTGTTGGATGCAAGATTTCAAAAGAGTCTATCTCTAAGAAATCTATTGTCAATTGATTATGTGAAGAGAATTATGGAAATTAAAGATAAGTTAGCGAATGTGTCTTTTGTGGTTAATGATGAAGACTTGTTTATCTACACCTTAAATGGCCTGTCATCCGATTATAATACTTTCAAGACCTCACTACGTACTCGTTCACAACCTCCATCTTTTGTCAAATTACATGTTCTTCTAAAATCTGAGGCATCAGCTCTTGAGAAACAAAATCGTGTTGATGATTCTACTATTCAGCCTACTGCTATGTTAGCTAATGCCCAGTCTGGTGCTTCTCGAGGTCAAAATTCTGTTAATTCGTTTCGTGGACGGTCTCAAGGTCGAGGGCGTAATCAAGGTTTACATGAGCATTTATCTTCTGCAACTAATATTGTTGATCATTCTGATGTTGTTATTGCTCCCACAAACGTTGATGTTGTTATTGATTCTACTGCCCCTAATGTTACTTGTGATCAGCCAACATCTGGTACCCATATTACTTCTACTATTGGTACCAATACTACTAATAGAAGTAATAGAAGTAAGTTACTCACAGCATTCGAGGAACTGATACTTGGTAACGGAAGAGTTCCTGCGGGCAGAAAACTTGCCGAGCAAGCTTCGAGAGACTTTCTCGACGCGATCGTCCTCTTCGCTGAAATCGAATACGGCGAATCTCTTGCTTCCGCCGTCACCTTTTCCTCTGTCCTTGCTGCTTCTCGAGGAAGAGGGCTTGGAAGTCCGAGTCATACTGCCACTGGCATCGCTTAG

Coding sequence (CDS)

ATGGCATCTGAAATGCAGAAAGATCTTAATTCTCCTATTTTTCTTCTTTCAAACATCTGTAATCTCGTCTCAATCTGTCTTGAATTGTCAAATTTTATTCTCTGGAAGTTTCAATTAACTTCTATTCTCAAGGCGCACAAGCTATTTGGATTCGTTGATGGATCTTTGATGTCTCCTCCAAAAGTTCTCCTGTCTGAAGCACCTGGTTCTGAAGAAACTCAACCGAATCCGAAATTTGATGATTGGATCGCTAAGGATCATGCTCTCATGACGCTAATTAACGTCTGTCGCCGGCAGCTCTTGCATATGTTGTTGGATGCAAGATTTCAAAAGAGTCTATCTCTAAGAAATCTATTGTCAATTGATTATGTGAAGAGAATTATGGAAATTAAAGATAAGTTAGCGAATGTGTCTTTTGTGGTTAATGATGAAGACTTGTTTATCTACACCTTAAATGGCCTGTCATCCGATTATAATACTTTCAAGACCTCACTACGTACTCGTTCACAACCTCCATCTTTTGTCAAATTACATGTTCTTCTAAAATCTGAGGCATCAGCTCTTGAGAAACAAAATCGTGTTGATGATTCTACTATTCAGCCTACTGCTATGTTAGCTAATGCCCAGTCTGGTGCTTCTCGAGGTCAAAATTCTGTTAATTCGTTTCGTGGACGGTCTCAAGGTCGAGGGCGTAATCAAGGTTTACATGAGCATTTATCTTCTGCAACTAATATTGTTGATCATTCTGATGTTGTTATTGCTCCCACAAACGTTGATGTTGTTATTGATTCTACTGCCCCTAATGTTACTTGTGATCAGCCAACATCTGGTACCCATATTACTTCTACTATTGGTACCAATACTACTAATAGAAGTAATAGAAGTAAGTTACTCACAGCATTCGAGGAACTGATACTTGGTAACGGAAGAGTTCCTGCGGGCAGAAAACTTGCCGAGCAAGCTTCGAGAGACTTTCTCGACGCGATCGTCCTCTTCGCTGAAATCGAATACGGCGAATCTCTTGCTTCCGCCGTCACCTTTTCCTCTGTCCTTGCTGCTTCTCGAGGAAGAGGGCTTGGAAGTCCGAGTCATACTGCCACTGGCATCGCTTAG

Protein sequence

MASEMQKDLNSPIFLLSNICNLVSICLELSNFILWKFQLTSILKAHKLFGFVDGSLMSPPKVLLSEAPGSEETQPNPKFDDWIAKDHALMTLINVCRRQLLHMLLDARFQKSLSLRNLLSIDYVKRIMEIKDKLANVSFVVNDEDLFIYTLNGLSSDYNTFKTSLRTRSQPPSFVKLHVLLKSEASALEKQNRVDDSTIQPTAMLANAQSGASRGQNSVNSFRGRSQGRGRNQGLHEHLSSATNIVDHSDVVIAPTNVDVVIDSTAPNVTCDQPTSGTHITSTIGTNTTNRSNRSKLLTAFEELILGNGRVPAGRKLAEQASRDFLDAIVLFAEIEYGESLASAVTFSSVLAASRGRGLGSPSHTATGIA

Homology

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BLAST of Spg003936 vs. NCBI nr
Match: XP_008448007.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo])

HSP 1 Score: 211.5 bits (537), Expect = 1.3e-50
Identity = 128/263 (48.67%), Postives = 171/263 (65.02%), Query Frame = 0


Query: 2   ASEMQKDLNSPIFLLSNICNLVSICLELSNFILWKFQLTSILKAHKLFGFVDGSLMSPPK 61
           +S  +KD  SPIFLLSNICNL+S+ L+ +NF+LWKFQLT+ILKAHKL+GF+DG+   PP+
Sbjct: 9   SSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPPR 68

Query: 62  VLLSEAPGSEETQPNPKFDDWIAKDHALMTLIN--------------VCRRQLLHMLLDA 121
              S +  +   Q NP ++DWIAKD ALMT+IN                 +Q+  +L  A
Sbjct: 69  TNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVL--A 128

Query: 122 RFQKSLSLRNLL---------------SID-YVKRIMEIKDKLANVSFVVNDEDLFIYTL 181
           +   S S  N++               SID Y+KRI EIKDKLANVS  +N+EDL IY L
Sbjct: 129 KLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLLIYAL 188

Query: 182 NGLSSDYNTFKTSLRTRSQPPSFVKLHVLLKSEASALEKQNRVDDSTIQPTAMLANAQSG 235
           NGL ++YNTF+TS+RTRSQP +F +LHVLL++E SAL KQ++ DDS  QPT +L+++QS 
Sbjct: 189 NGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLLSSSQSL 248

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BLAST of Spg003936 vs. NCBI nr
Match: XP_008448008.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo])

HSP 1 Score: 211.5 bits (537), Expect = 1.3e-50
Identity = 128/263 (48.67%), Postives = 171/263 (65.02%), Query Frame = 0


Query: 2   ASEMQKDLNSPIFLLSNICNLVSICLELSNFILWKFQLTSILKAHKLFGFVDGSLMSPPK 61
           +S  +KD  SPIFLLSNICNL+S+ L+ +NF+LWKFQLT+ILKAHKL+GF+DG+   PP+
Sbjct: 9   SSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPPR 68

Query: 62  VLLSEAPGSEETQPNPKFDDWIAKDHALMTLIN--------------VCRRQLLHMLLDA 121
              S +  +   Q NP ++DWIAKD ALMT+IN                 +Q+  +L  A
Sbjct: 69  TNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVL--A 128

Query: 122 RFQKSLSLRNLL---------------SID-YVKRIMEIKDKLANVSFVVNDEDLFIYTL 181
           +   S S  N++               SID Y+KRI EIKDKLANVS  +N+EDL IY L
Sbjct: 129 KLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLLIYAL 188

Query: 182 NGLSSDYNTFKTSLRTRSQPPSFVKLHVLLKSEASALEKQNRVDDSTIQPTAMLANAQSG 235
           NGL ++YNTF+TS+RTRSQP +F +LHVLL++E SAL KQ++ DDS  QPT +L+++QS 
Sbjct: 189 NGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLLSSSQSL 248

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BLAST of Spg003936 vs. NCBI nr
Match: KAA0049700.1 (T4.5 [Cucumis melo var. makuwa] >TYK12172.1 T4.5 [Cucumis melo var. makuwa])

HSP 1 Score: 211.5 bits (537), Expect = 1.3e-50
Identity = 128/263 (48.67%), Postives = 171/263 (65.02%), Query Frame = 0


Query: 2   ASEMQKDLNSPIFLLSNICNLVSICLELSNFILWKFQLTSILKAHKLFGFVDGSLMSPPK 61
           +S  +KD  SPIFLLSNICNL+S+ L+ +NF+LWKFQLT+ILKAHKL+GF+DG+   PP+
Sbjct: 9   SSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPPR 68

Query: 62  VLLSEAPGSEETQPNPKFDDWIAKDHALMTLIN--------------VCRRQLLHMLLDA 121
              S +  +   Q NP ++DWIAKD ALMT+IN                 +Q+  +L  A
Sbjct: 69  TNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVL--A 128

Query: 122 RFQKSLSLRNLL---------------SID-YVKRIMEIKDKLANVSFVVNDEDLFIYTL 181
           +   S S  N++               SID Y+KRI EIKDKLANVS  +N+EDL IY L
Sbjct: 129 KLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLLIYAL 188

Query: 182 NGLSSDYNTFKTSLRTRSQPPSFVKLHVLLKSEASALEKQNRVDDSTIQPTAMLANAQSG 235
           NGL ++YNTF+TS+RTRSQP +F +LHVLL++E SAL KQ++ DDS  QPT +L+++QS 
Sbjct: 189 NGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLLSSSQSL 248

[Close]

BLAST of Spg003936 vs. NCBI nr
Match: XP_016900446.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X1 [Cucumis melo])

HSP 1 Score: 211.5 bits (537), Expect = 1.3e-50
Identity = 128/263 (48.67%), Postives = 171/263 (65.02%), Query Frame = 0


Query: 2   ASEMQKDLNSPIFLLSNICNLVSICLELSNFILWKFQLTSILKAHKLFGFVDGSLMSPPK 61
           +S  +KD  SPIFLLSNICNL+S+ L+ +NF+LWKFQLT+ILKAHKL+GF+DG+   PP+
Sbjct: 9   SSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPPR 68

Query: 62  VLLSEAPGSEETQPNPKFDDWIAKDHALMTLIN--------------VCRRQLLHMLLDA 121
              S +  +   Q NP ++DWIAKD ALMT+IN                 +Q+  +L  A
Sbjct: 69  TNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVL--A 128

Query: 122 RFQKSLSLRNLL---------------SID-YVKRIMEIKDKLANVSFVVNDEDLFIYTL 181
           +   S S  N++               SID Y+KRI EIKDKLANVS  +N+EDL IY L
Sbjct: 129 KLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLLIYAL 188

Query: 182 NGLSSDYNTFKTSLRTRSQPPSFVKLHVLLKSEASALEKQNRVDDSTIQPTAMLANAQSG 235
           NGL ++YNTF+TS+RTRSQP +F +LHVLL++E SAL KQ++ DDS  QPT +L+++QS 
Sbjct: 189 NGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLLSSSQSL 248

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BLAST of Spg003936 vs. NCBI nr
Match: KAE8645659.1 (hypothetical protein Csa_020439 [Cucumis sativus])

HSP 1 Score: 206.5 bits (524), Expect = 4.1e-49
Identity = 131/266 (49.25%), Postives = 170/266 (63.91%), Query Frame = 0


Query: 2   ASEMQKDLNSPIFLLSNICNLVSICLELSNFILWKFQLTSILKAHKLFGFVDGSLMSPPK 61
           +S  +KD  SPIFLLSNICNL+S+ L+ +NF+LWKFQLT+ILKAHKLFGFVDG+   P  
Sbjct: 9   SSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLFGFVDGTNPCP-- 68

Query: 62  VLLSEAPGSEETQP---NPKFDDWIAKDHALMTLIN--------------VCRRQLLHML 121
                +P +  T P   NP ++DWIAKD ALMT+IN                 +Q+  +L
Sbjct: 69  ---QTSPSTTSTVPPQTNPLYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVL 128

Query: 122 LDARFQKSLSLRNLL---------------SID-YVKRIMEIKDKLANVSFVVNDEDLFI 181
             A+   S S  N++               SID Y+KRI EIKDKLANVS  +N+EDL I
Sbjct: 129 --AKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLLI 188

Query: 182 YTLNGLSSDYNTFKTSLRTRSQPPSFVKLHVLLKSEASALEKQNRVDDSTIQPTAMLANA 235
           Y LNGL ++YNTF+TS+RTRSQP +F +LHVLL++E SAL KQ++ DDS  QPT +L+++
Sbjct: 189 YALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKCDDSYNQPTVLLSSS 248

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BLAST of Spg003936 vs. ExPASy TrEMBL
Match: A0A5D3CLI6 (T4.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001120 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 6.2e-51
Identity = 128/263 (48.67%), Postives = 171/263 (65.02%), Query Frame = 0


Query: 2   ASEMQKDLNSPIFLLSNICNLVSICLELSNFILWKFQLTSILKAHKLFGFVDGSLMSPPK 61
           +S  +KD  SPIFLLSNICNL+S+ L+ +NF+LWKFQLT+ILKAHKL+GF+DG+   PP+
Sbjct: 9   SSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPPR 68

Query: 62  VLLSEAPGSEETQPNPKFDDWIAKDHALMTLIN--------------VCRRQLLHMLLDA 121
              S +  +   Q NP ++DWIAKD ALMT+IN                 +Q+  +L  A
Sbjct: 69  TNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVL--A 128

Query: 122 RFQKSLSLRNLL---------------SID-YVKRIMEIKDKLANVSFVVNDEDLFIYTL 181
           +   S S  N++               SID Y+KRI EIKDKLANVS  +N+EDL IY L
Sbjct: 129 KLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLLIYAL 188

Query: 182 NGLSSDYNTFKTSLRTRSQPPSFVKLHVLLKSEASALEKQNRVDDSTIQPTAMLANAQSG 235
           NGL ++YNTF+TS+RTRSQP +F +LHVLL++E SAL KQ++ DDS  QPT +L+++QS 
Sbjct: 189 NGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLLSSSQSL 248

[Close]

BLAST of Spg003936 vs. ExPASy TrEMBL
Match: A0A1S3BI58 (uncharacterized protein LOC103490319 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 6.2e-51
Identity = 128/263 (48.67%), Postives = 171/263 (65.02%), Query Frame = 0


Query: 2   ASEMQKDLNSPIFLLSNICNLVSICLELSNFILWKFQLTSILKAHKLFGFVDGSLMSPPK 61
           +S  +KD  SPIFLLSNICNL+S+ L+ +NF+LWKFQLT+ILKAHKL+GF+DG+   PP+
Sbjct: 9   SSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPPR 68

Query: 62  VLLSEAPGSEETQPNPKFDDWIAKDHALMTLIN--------------VCRRQLLHMLLDA 121
              S +  +   Q NP ++DWIAKD ALMT+IN                 +Q+  +L  A
Sbjct: 69  TNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVL--A 128

Query: 122 RFQKSLSLRNLL---------------SID-YVKRIMEIKDKLANVSFVVNDEDLFIYTL 181
           +   S S  N++               SID Y+KRI EIKDKLANVS  +N+EDL IY L
Sbjct: 129 KLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLLIYAL 188

Query: 182 NGLSSDYNTFKTSLRTRSQPPSFVKLHVLLKSEASALEKQNRVDDSTIQPTAMLANAQSG 235
           NGL ++YNTF+TS+RTRSQP +F +LHVLL++E SAL KQ++ DDS  QPT +L+++QS 
Sbjct: 189 NGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLLSSSQSL 248

[Close]

BLAST of Spg003936 vs. ExPASy TrEMBL
Match: A0A1S4DWT9 (uncharacterized protein LOC103490319 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 6.2e-51
Identity = 128/263 (48.67%), Postives = 171/263 (65.02%), Query Frame = 0


Query: 2   ASEMQKDLNSPIFLLSNICNLVSICLELSNFILWKFQLTSILKAHKLFGFVDGSLMSPPK 61
           +S  +KD  SPIFLLSNICNL+S+ L+ +NF+LWKFQLT+ILKAHKL+GF+DG+   PP+
Sbjct: 9   SSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPPR 68

Query: 62  VLLSEAPGSEETQPNPKFDDWIAKDHALMTLIN--------------VCRRQLLHMLLDA 121
              S +  +   Q NP ++DWIAKD ALMT+IN                 +Q+  +L  A
Sbjct: 69  TNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVL--A 128

Query: 122 RFQKSLSLRNLL---------------SID-YVKRIMEIKDKLANVSFVVNDEDLFIYTL 181
           +   S S  N++               SID Y+KRI EIKDKLANVS  +N+EDL IY L
Sbjct: 129 KLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLLIYAL 188

Query: 182 NGLSSDYNTFKTSLRTRSQPPSFVKLHVLLKSEASALEKQNRVDDSTIQPTAMLANAQSG 235
           NGL ++YNTF+TS+RTRSQP +F +LHVLL++E SAL KQ++ DDS  QPT +L+++QS 
Sbjct: 189 NGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLLSSSQSL 248

[Close]

BLAST of Spg003936 vs. ExPASy TrEMBL
Match: A0A1S3BIR3 (uncharacterized protein LOC103490319 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 6.2e-51
Identity = 128/263 (48.67%), Postives = 171/263 (65.02%), Query Frame = 0


Query: 2   ASEMQKDLNSPIFLLSNICNLVSICLELSNFILWKFQLTSILKAHKLFGFVDGSLMSPPK 61
           +S  +KD  SPIFLLSNICNL+S+ L+ +NF+LWKFQLT+ILKAHKL+GF+DG+   PP+
Sbjct: 9   SSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPPR 68

Query: 62  VLLSEAPGSEETQPNPKFDDWIAKDHALMTLIN--------------VCRRQLLHMLLDA 121
              S +  +   Q NP ++DWIAKD ALMT+IN                 +Q+  +L  A
Sbjct: 69  TNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVL--A 128

Query: 122 RFQKSLSLRNLL---------------SID-YVKRIMEIKDKLANVSFVVNDEDLFIYTL 181
           +   S S  N++               SID Y+KRI EIKDKLANVS  +N+EDL IY L
Sbjct: 129 KLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLLIYAL 188

Query: 182 NGLSSDYNTFKTSLRTRSQPPSFVKLHVLLKSEASALEKQNRVDDSTIQPTAMLANAQSG 235
           NGL ++YNTF+TS+RTRSQP +F +LHVLL++E SAL KQ++ DDS  QPT +L+++QS 
Sbjct: 189 NGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLLSSSQSL 248

[Close]

BLAST of Spg003936 vs. ExPASy TrEMBL
Match: A0A6J1D9L6 (uncharacterized protein LOC111018892 OS=Momordica charantia OX=3673 GN=LOC111018892 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 9.8e-49
Identity = 129/272 (47.43%), Postives = 170/272 (62.50%), Query Frame = 0


Query: 2   ASEMQKDLNSPIFLLSNICNLVSICLELSNFILWKFQLTSILKAHKLFGFVDGSLMSPPK 61
           ++  +KDL+SPIFLLSNICNLVSI L+ ++FILWKFQLT+ILKAHKLFGF+DGS+ +P +
Sbjct: 26  STNTKKDLHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVSAPSQ 85

Query: 62  VLLSEAPGSEETQP---------NPKFDDWIAKDHALMTLINV--------------CRR 121
            L S +    E+QP         NP F+DWIAKD ALMTLIN                 +
Sbjct: 86  FLASSS--ETESQPTTTTSLPVINPHFEDWIAKDQALMTLINATLSAEALAYVVRSGTSK 145

Query: 122 QLLHMLLDARFQKSLSLRNLL---------------SID-YVKRIMEIKDKLANVSFVVN 181
           Q+  +L   +   S S  N++               SID YVKRI EIKDK ANVS  +N
Sbjct: 146 QVWEVL--EKHYSSNSRTNVVNLKSDLQSIVKKTEESIDAYVKRIKEIKDKFANVSITIN 205

Query: 182 DEDLFIYTLNGLSSDYNTFKTSLRTRSQPPSFVKLHVLLKSEASALEKQNRVDDSTIQPT 235
           DE L IY LNGLS++YNT  TS+RTR+Q  SF +LHV +KSE SA+EKQ + +D   QP 
Sbjct: 206 DEYLLIYALNGLSTEYNTLSTSMRTRAQSVSFEELHVFMKSEESAIEKQMKREDLVTQPN 265

[Close]

BLAST of Spg003936 vs. TAIR 10
Match: AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 5.6e-04
Identity = 31/116 (26.72%), Postives = 53/116 (45.69%), Query Frame = 0


Query: 122 DYVKRIMEIKDKLANVSFVVNDEDLFIYTLNGLSSDYNTFKTSLRTRSQPPSFVKLHVLL 181
           DY +++ ++ D L NV   V D +L +Y LNGL+  ++     ++ R   PSF     +L
Sbjct: 133 DYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDDAATML 192

Query: 182 KSEASALEK-----QNRVDDSTIQPTAMLANAQSGASRGQNSVNSFRGRSQGRGRN 233
           + E   L++        VD S+       + A    +  ++  N    R +GRG N
Sbjct: 193 QEEEDRLKRAIKPNPTHVDHSSSSTVLACSEAPPVTNFQRSGGNQMGYRGRGRGNN 248

The following BLAST results are available for this feature:

BLAST of Spg003936 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448007.1	1.3e-50	48.67	PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]	[more]
XP_008448008.1	1.3e-50	48.67	PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]	[more]
KAA0049700.1	1.3e-50	48.67	T4.5 [Cucumis melo var. makuwa] >TYK12172.1 T4.5 [Cucumis melo var. makuwa]	[more]
XP_016900446.1	1.3e-50	48.67	PREDICTED: uncharacterized protein LOC103490319 isoform X1 [Cucumis melo]	[more]
KAE8645659.1	4.1e-49	49.25	hypothetical protein Csa_020439 [Cucumis sativus]	[more]

BLAST of Spg003936 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg003936 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CLI6	6.2e-51	48.67	T4.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001120 PE=4 SV=...	[more]
A0A1S3BI58	6.2e-51	48.67	uncharacterized protein LOC103490319 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4DWT9	6.2e-51	48.67	uncharacterized protein LOC103490319 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3BIR3	6.2e-51	48.67	uncharacterized protein LOC103490319 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1D9L6	9.8e-49	47.43	uncharacterized protein LOC111018892 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]

BLAST of Spg003936 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G34070.1	5.6e-04	26.72	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029472	Retrotransposon Copia-like, N-terminal	PFAM	PF14244	Retrotran_gag_3	coord: 21..60 e-value: 9.3E-8 score: 31.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 207..234
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 24..281
None	No IPR available	PANTHER	PTHR34222:SF48	SUBFAMILY NOT NAMED	coord: 24..281

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg003936.1	Spg003936.1	mRNA