Spg003917 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg003917
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionclassical arabinogalactan protein 1-like
Locationscaffold4: 1029482 .. 1029820 (+)
RNA-Seq ExpressionSpg003917
SyntenySpg003917
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCGTACGCATCACAGTTCTGGCGCTAATGGTTCTCTTCTTCATCACCTCCACGGTGGCTCAATCTCCATCGCCGTCGCCAAAGAAATCTCCGCATGCAGCCTCTCCCTCGCCGACGCCCCATTCCCCGAAGGTTTCTCACAAATCGGCGCCGTCGCCGGCCACCGCTAAGCCTCCTACCGCCTCTTCGCCGTCACCGGCCGTTTCGCCATCCTCCATCTCCTCCCCTCCCGCCGACGCTCCTGCTCCTGCCACTAACAATGCTGTTTCCTCTACTGTCACCGTCGCTGGTTATCTTTTCGCCGCCGTCTCCGTCGCTGCTTTCCTCTTCTAG

mRNA sequence

ATGGCTTCCGTACGCATCACAGTTCTGGCGCTAATGGTTCTCTTCTTCATCACCTCCACGGTGGCTCAATCTCCATCGCCGTCGCCAAAGAAATCTCCGCATGCAGCCTCTCCCTCGCCGACGCCCCATTCCCCGAAGGTTTCTCACAAATCGGCGCCGTCGCCGGCCACCGCTAAGCCTCCTACCGCCTCTTCGCCGTCACCGGCCGTTTCGCCATCCTCCATCTCCTCCCCTCCCGCCGACGCTCCTGCTCCTGCCACTAACAATGCTGTTTCCTCTACTGTCACCGTCGCTGGTTATCTTTTCGCCGCCGTCTCCGTCGCTGCTTTCCTCTTCTAG

Coding sequence (CDS)

ATGGCTTCCGTACGCATCACAGTTCTGGCGCTAATGGTTCTCTTCTTCATCACCTCCACGGTGGCTCAATCTCCATCGCCGTCGCCAAAGAAATCTCCGCATGCAGCCTCTCCCTCGCCGACGCCCCATTCCCCGAAGGTTTCTCACAAATCGGCGCCGTCGCCGGCCACCGCTAAGCCTCCTACCGCCTCTTCGCCGTCACCGGCCGTTTCGCCATCCTCCATCTCCTCCCCTCCCGCCGACGCTCCTGCTCCTGCCACTAACAATGCTGTTTCCTCTACTGTCACCGTCGCTGGTTATCTTTTCGCCGCCGTCTCCGTCGCTGCTTTCCTCTTCTAG

Protein sequence

MASVRITVLALMVLFFITSTVAQSPSPSPKKSPHAASPSPTPHSPKVSHKSAPSPATAKPPTASSPSPAVSPSSISSPPADAPAPATNNAVSSTVTVAGYLFAAVSVAAFLF
Homology
BLAST of Spg003917 vs. NCBI nr
Match: XP_022141985.1 (classical arabinogalactan protein 1-like [Momordica charantia])

HSP 1 Score: 94.0 bits (232), Expect = 8.9e-16
Identity = 72/108 (66.67%), Postives = 77/108 (71.30%), Query Frame = 0

Query: 1   MASVRITVLALMVLFFITSTVAQSPSPSPKKSPHAASPSPTPHSPKVSHKSAPSPATAK- 60
           MASVR TVLALM L  ITS  AQ    SPKK  HAASPSP   SP+VS KSAPSPAT K 
Sbjct: 1   MASVRFTVLALMALILITSAAAQ----SPKKHSHAASPSPAADSPRVSPKSAPSPATGKH 60

Query: 61  ---PPTASSPSPAVSPSSISSPPADAPAPATNNAVSSTVTVAGYLFAA 105
               P +SSPSPA+ PSSISSPPADAPA A N A S++  VAG LFAA
Sbjct: 61  SLAGPPSSSPSPALPPSSISSPPADAPAAAGNTAASNSFAVAGSLFAA 104

BLAST of Spg003917 vs. NCBI nr
Match: XP_011659718.1 (classical arabinogalactan protein 10 [Cucumis sativus] >KGN43746.1 hypothetical protein Csa_017283 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-10
Identity = 66/116 (56.90%), Postives = 80/116 (68.97%), Query Frame = 0

Query: 1   MASVRITVLALMVLFFITSTVAQSPSPSPKKSPHAASPSPTPH-SPKVSHKSAPSPATAK 60
           MAS+ IT++AL  LF ITST AQSP+PSPKKS H  S SP+PH SP +SHKS  SP    
Sbjct: 1   MASLPITLMALTALFLITSTFAQSPAPSPKKSHHPHSHSPSPHNSPILSHKSVSSP---- 60

Query: 61  PPTASSPSPAVSP-SSISSPPADAPAPAT--NNAVSSTVTVAGYLFAAVSVAAFLF 113
                SPSP+ SP +S S PPA+A APA   N+A+++T  V+  LF AVS AAFLF
Sbjct: 61  -----SPSPSPSPVASSSLPPANALAPALLFNDAITNTFAVSASLFTAVSAAAFLF 107

BLAST of Spg003917 vs. NCBI nr
Match: PQQ16428.1 (classical arabinogalactan protein 1 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-06
Identity = 58/123 (47.15%), Postives = 73/123 (59.35%), Query Frame = 0

Query: 1   MASVRITVLALMVLFFITSTVAQSPSPSPKKSP-----HAASPSPTPHSPKVS------- 60
           MA     VL LM    + ST AQSP+ SP KSP     HAA+PSP+   PK S       
Sbjct: 1   MARFSSVVLVLMASLLLASTRAQSPTSSPAKSPALSPKHAAAPSPSSTPPKASPSPLSTP 60

Query: 61  HKSAPSPATAKPPTASSPSPAVSPSSISSPPADAPAPATNNAVSSTVTVAGYL----FAA 108
             +APS +   PP+AS  SPA+ PSS+S PP++APAPATN AV +  + AG++    FAA
Sbjct: 61  PSAAPSHSPPSPPSASPESPAIPPSSVSVPPSEAPAPATNGAVLNRFSAAGFVAVGFFAA 120

BLAST of Spg003917 vs. NCBI nr
Match: KAF3974006.1 (hypothetical protein CMV_002619 [Castanea mollissima])

HSP 1 Score: 61.6 bits (148), Expect = 4.9e-06
Identity = 56/110 (50.91%), Postives = 72/110 (65.45%), Query Frame = 0

Query: 2   ASVRITVLALMVLFFITSTVAQSPSPSPKKSPHAASPSPTPHSPKVSHKSAPSPATAKPP 61
           +S+ I +LA++V+  I  + A SP  SPKKSP A+SP          H SAPSPAT K P
Sbjct: 5   SSIVILLLAMLVVSAIAQSPATSPVASPKKSP-ASSP----------HASAPSPATVKSP 64

Query: 62  TASSPSPAVSPSSISSPPADAPAPATNNAVSSTVTVAGYLFAAVSVAAFL 112
              SPSPA +PSSIS PP++APAPA N AVS++  +AG + A V+ A FL
Sbjct: 65  --PSPSPATTPSSISGPPSEAPAPAQNGAVSNSFALAGSV-AVVAFAGFL 100

BLAST of Spg003917 vs. NCBI nr
Match: XP_030942551.1 (classical arabinogalactan protein 1-like [Quercus lobata])

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-05
Identity = 55/110 (50.00%), Postives = 70/110 (63.64%), Query Frame = 0

Query: 2   ASVRITVLALMVLFFITSTVAQSPSPSPKKSPHAASPSPTPHSPKVSHKSAPSPATAKPP 61
           +S+ I +LA++V+  I  + A SP  SPKKSP A SP          H SAPSPAT K P
Sbjct: 5   SSIVILLLAMLVVSAIAQSPASSPVASPKKSP-ALSP----------HASAPSPATVKSP 64

Query: 62  TASSPSPAVSPSSISSPPADAPAPATNNAVSSTVTVAGYLFAAVSVAAFL 112
              SPSP  +PSSIS PP++APAPA N AVS++  +AG + A V+ A FL
Sbjct: 65  --PSPSPVTTPSSISGPPSEAPAPAQNGAVSNSFALAGSV-AVVAFAGFL 100

BLAST of Spg003917 vs. ExPASy TrEMBL
Match: A0A6J1CJM5 (classical arabinogalactan protein 1-like OS=Momordica charantia OX=3673 GN=LOC111012223 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.3e-16
Identity = 72/108 (66.67%), Postives = 77/108 (71.30%), Query Frame = 0

Query: 1   MASVRITVLALMVLFFITSTVAQSPSPSPKKSPHAASPSPTPHSPKVSHKSAPSPATAK- 60
           MASVR TVLALM L  ITS  AQ    SPKK  HAASPSP   SP+VS KSAPSPAT K 
Sbjct: 1   MASVRFTVLALMALILITSAAAQ----SPKKHSHAASPSPAADSPRVSPKSAPSPATGKH 60

Query: 61  ---PPTASSPSPAVSPSSISSPPADAPAPATNNAVSSTVTVAGYLFAA 105
               P +SSPSPA+ PSSISSPPADAPA A N A S++  VAG LFAA
Sbjct: 61  SLAGPPSSSPSPALPPSSISSPPADAPAAAGNTAASNSFAVAGSLFAA 104

BLAST of Spg003917 vs. ExPASy TrEMBL
Match: A0A0A0K7F2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064070 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.5e-11
Identity = 66/116 (56.90%), Postives = 80/116 (68.97%), Query Frame = 0

Query: 1   MASVRITVLALMVLFFITSTVAQSPSPSPKKSPHAASPSPTPH-SPKVSHKSAPSPATAK 60
           MAS+ IT++AL  LF ITST AQSP+PSPKKS H  S SP+PH SP +SHKS  SP    
Sbjct: 1   MASLPITLMALTALFLITSTFAQSPAPSPKKSHHPHSHSPSPHNSPILSHKSVSSP---- 60

Query: 61  PPTASSPSPAVSP-SSISSPPADAPAPAT--NNAVSSTVTVAGYLFAAVSVAAFLF 113
                SPSP+ SP +S S PPA+A APA   N+A+++T  V+  LF AVS AAFLF
Sbjct: 61  -----SPSPSPSPVASSSLPPANALAPALLFNDAITNTFAVSASLFTAVSAAAFLF 107

BLAST of Spg003917 vs. ExPASy TrEMBL
Match: A0A314ZGT3 (Classical arabinogalactan protein 1 OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_11060 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 8.2e-07
Identity = 58/123 (47.15%), Postives = 73/123 (59.35%), Query Frame = 0

Query: 1   MASVRITVLALMVLFFITSTVAQSPSPSPKKSP-----HAASPSPTPHSPKVS------- 60
           MA     VL LM    + ST AQSP+ SP KSP     HAA+PSP+   PK S       
Sbjct: 1   MARFSSVVLVLMASLLLASTRAQSPTSSPAKSPALSPKHAAAPSPSSTPPKASPSPLSTP 60

Query: 61  HKSAPSPATAKPPTASSPSPAVSPSSISSPPADAPAPATNNAVSSTVTVAGYL----FAA 108
             +APS +   PP+AS  SPA+ PSS+S PP++APAPATN AV +  + AG++    FAA
Sbjct: 61  PSAAPSHSPPSPPSASPESPAIPPSSVSVPPSEAPAPATNGAVLNRFSAAGFVAVGFFAA 120

BLAST of Spg003917 vs. ExPASy TrEMBL
Match: A0A7N2MWF4 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 9.1e-06
Identity = 55/110 (50.00%), Postives = 70/110 (63.64%), Query Frame = 0

Query: 2   ASVRITVLALMVLFFITSTVAQSPSPSPKKSPHAASPSPTPHSPKVSHKSAPSPATAKPP 61
           +S+ I +LA++V+  I  + A SP  SPKKSP A SP          H SAPSPAT K P
Sbjct: 5   SSIVILLLAMLVVSAIAQSPASSPVASPKKSP-ALSP----------HASAPSPATVKSP 64

Query: 62  TASSPSPAVSPSSISSPPADAPAPATNNAVSSTVTVAGYLFAAVSVAAFL 112
              SPSP  +PSSIS PP++APAPA N AVS++  +AG + A V+ A FL
Sbjct: 65  --PSPSPVTTPSSISGPPSEAPAPAQNGAVSNSFALAGSV-AVVAFAGFL 100

BLAST of Spg003917 vs. ExPASy TrEMBL
Match: A0A5A7V5Q9 (Classical arabinogalactan protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00230 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.0e-05
Identity = 57/118 (48.31%), Postives = 72/118 (61.02%), Query Frame = 0

Query: 3   SVRITVLALMVLFFITSTVAQSPSPSPKKSPHAASPSPTPHSPKVSHKSAPSPATAKPP- 62
           ++R  V  ++V F I S  AQSP+ SP K+P   S SP+  SPK S   AP+P++ K P 
Sbjct: 2   AIRSLVAMILVSFLIASAFAQSPTQSPSKAP---SVSPSVKSPKSSPALAPTPSSLKSPP 61

Query: 63  ----------TASSPSPAVSPSSISSPPADAPAPATNNAVSSTVTVAGYLFAAVSVAA 110
                      +SSPSPA SPSSISSPPADAPAP+ N A S T +V G   AAV++ A
Sbjct: 62  SPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLG--SAAVALYA 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022141985.18.9e-1666.67classical arabinogalactan protein 1-like [Momordica charantia][more]
XP_011659718.11.1e-1056.90classical arabinogalactan protein 10 [Cucumis sativus] >KGN43746.1 hypothetical ... [more]
PQQ16428.11.7e-0647.15classical arabinogalactan protein 1 [Prunus yedoensis var. nudiflora][more]
KAF3974006.14.9e-0650.91hypothetical protein CMV_002619 [Castanea mollissima][more]
XP_030942551.11.9e-0550.00classical arabinogalactan protein 1-like [Quercus lobata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CJM54.3e-1666.67classical arabinogalactan protein 1-like OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A0A0K7F25.5e-1156.90Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064070 PE=4 SV=1[more]
A0A314ZGT38.2e-0747.15Classical arabinogalactan protein 1 OS=Prunus yedoensis var. nudiflora OX=209455... [more]
A0A7N2MWF49.1e-0650.00Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A5A7V5Q92.0e-0548.31Classical arabinogalactan protein 1-like OS=Cucumis melo var. makuwa OX=1194695 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..58
NoneNo IPR availablePANTHERPTHR36321:SF2CLASSICAL ARABINOGALACTAN PROTEIN 1coord: 1..111
IPR044959Classical arabinogalactan proteinPANTHERPTHR36321CLASSICAL ARABINOGALACTAN PROTEIN 9coord: 1..111

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg003917.1Spg003917.1mRNA