Spg003917 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTCCGTACGCATCACAGTTCTGGCGCTAATGGTTCTCTTCTTCATCACCTCCACGGTGGCTCAATCTCCATCGCCGTCGCCAAAGAAATCTCCGCATGCAGCCTCTCCCTCGCCGACGCCCCATTCCCCGAAGGTTTCTCACAAATCGGCGCCGTCGCCGGCCACCGCTAAGCCTCCTACCGCCTCTTCGCCGTCACCGGCCGTTTCGCCATCCTCCATCTCCTCCCCTCCCGCCGACGCTCCTGCTCCTGCCACTAACAATGCTGTTTCCTCTACTGTCACCGTCGCTGGTTATCTTTTCGCCGCCGTCTCCGTCGCTGCTTTCCTCTTCTAG ATGGCTTCCGTACGCATCACAGTTCTGGCGCTAATGGTTCTCTTCTTCATCACCTCCACGGTGGCTCAATCTCCATCGCCGTCGCCAAAGAAATCTCCGCATGCAGCCTCTCCCTCGCCGACGCCCCATTCCCCGAAGGTTTCTCACAAATCGGCGCCGTCGCCGGCCACCGCTAAGCCTCCTACCGCCTCTTCGCCGTCACCGGCCGTTTCGCCATCCTCCATCTCCTCCCCTCCCGCCGACGCTCCTGCTCCTGCCACTAACAATGCTGTTTCCTCTACTGTCACCGTCGCTGGTTATCTTTTCGCCGCCGTCTCCGTCGCTGCTTTCCTCTTCTAG ATGGCTTCCGTACGCATCACAGTTCTGGCGCTAATGGTTCTCTTCTTCATCACCTCCACGGTGGCTCAATCTCCATCGCCGTCGCCAAAGAAATCTCCGCATGCAGCCTCTCCCTCGCCGACGCCCCATTCCCCGAAGGTTTCTCACAAATCGGCGCCGTCGCCGGCCACCGCTAAGCCTCCTACCGCCTCTTCGCCGTCACCGGCCGTTTCGCCATCCTCCATCTCCTCCCCTCCCGCCGACGCTCCTGCTCCTGCCACTAACAATGCTGTTTCCTCTACTGTCACCGTCGCTGGTTATCTTTTCGCCGCCGTCTCCGTCGCTGCTTTCCTCTTCTAG MASVRITVLALMVLFFITSTVAQSPSPSPKKSPHAASPSPTPHSPKVSHKSAPSPATAKPPTASSPSPAVSPSSISSPPADAPAPATNNAVSSTVTVAGYLFAAVSVAAFLF Homology
BLAST of Spg003917 vs. NCBI nr
Match: XP_022141985.1 (classical arabinogalactan protein 1-like [Momordica charantia]) HSP 1 Score: 94.0 bits (232), Expect = 8.9e-16 Identity = 72/108 (66.67%), Postives = 77/108 (71.30%), Query Frame = 0
BLAST of Spg003917 vs. NCBI nr
Match: XP_011659718.1 (classical arabinogalactan protein 10 [Cucumis sativus] >KGN43746.1 hypothetical protein Csa_017283 [Cucumis sativus]) HSP 1 Score: 77.0 bits (188), Expect = 1.1e-10 Identity = 66/116 (56.90%), Postives = 80/116 (68.97%), Query Frame = 0
BLAST of Spg003917 vs. NCBI nr
Match: PQQ16428.1 (classical arabinogalactan protein 1 [Prunus yedoensis var. nudiflora]) HSP 1 Score: 63.2 bits (152), Expect = 1.7e-06 Identity = 58/123 (47.15%), Postives = 73/123 (59.35%), Query Frame = 0
BLAST of Spg003917 vs. NCBI nr
Match: KAF3974006.1 (hypothetical protein CMV_002619 [Castanea mollissima]) HSP 1 Score: 61.6 bits (148), Expect = 4.9e-06 Identity = 56/110 (50.91%), Postives = 72/110 (65.45%), Query Frame = 0
BLAST of Spg003917 vs. NCBI nr
Match: XP_030942551.1 (classical arabinogalactan protein 1-like [Quercus lobata]) HSP 1 Score: 59.7 bits (143), Expect = 1.9e-05 Identity = 55/110 (50.00%), Postives = 70/110 (63.64%), Query Frame = 0
BLAST of Spg003917 vs. ExPASy TrEMBL
Match: A0A6J1CJM5 (classical arabinogalactan protein 1-like OS=Momordica charantia OX=3673 GN=LOC111012223 PE=4 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 4.3e-16 Identity = 72/108 (66.67%), Postives = 77/108 (71.30%), Query Frame = 0
BLAST of Spg003917 vs. ExPASy TrEMBL
Match: A0A0A0K7F2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064070 PE=4 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 5.5e-11 Identity = 66/116 (56.90%), Postives = 80/116 (68.97%), Query Frame = 0
BLAST of Spg003917 vs. ExPASy TrEMBL
Match: A0A314ZGT3 (Classical arabinogalactan protein 1 OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_11060 PE=4 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 8.2e-07 Identity = 58/123 (47.15%), Postives = 73/123 (59.35%), Query Frame = 0
BLAST of Spg003917 vs. ExPASy TrEMBL
Match: A0A7N2MWF4 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 9.1e-06 Identity = 55/110 (50.00%), Postives = 70/110 (63.64%), Query Frame = 0
BLAST of Spg003917 vs. ExPASy TrEMBL
Match: A0A5A7V5Q9 (Classical arabinogalactan protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00230 PE=4 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 2.0e-05 Identity = 57/118 (48.31%), Postives = 72/118 (61.02%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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