Spg003877 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg003877
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Locationscaffold8: 21948805 .. 21953326 (-)
RNA-Seq ExpressionSpg003877
SyntenySpg003877
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGTGGGCCGTATCACATAGTGTCACCAGGATAAGGTACCCAGCCTTATCCCTATACTATAGACCATTTAGGTTGTTACTTGGACACTGATCCCCGTATGTCCCCACATACTAGTCCAAGTTTCATTTAAACAACCTTGGATCTTAGTTTATTGGATTTAGGGTTTATTAATGCAAACTCGATTATTCAATAACCAAATTACTGAATTACTCAAATAACACTTTATTGAGATCGATTAATTTGTTTCATTTACTATCTATGAGTTTTAGGGAATAAAACCCAAGACCAAAGACCCACAAGCCTAAAGTCTATGTTTTGCAAACCACTTTCTTTTTAAATTGGTGACTAATCACACCCTAATAATGGTTGGTGGCGACTCCAAACCTCTTTACCATAAACCCCACCTTTTTAGAGGATGTTGGCCAGCTTCGCATTGCGATATGATAGTGATTCTAACCCTTTTTTCTTCTCATCTCCTTCTTCTATGTTTTCCTCTCTGTAATTTTGCTGCCTGTTCTTCTTCTTATCATTTGTTTCTCGATTTCTTTCCTATATGGCTCGTGTCTTCTTCTCGATTTCTTTCACTATAGTTTATTCTCCCATGGTGATTCTCAAATTTCACTCTCTCAAATTTCACCAATCGTAGGTTCCCATGGAAGCTTTAAAAACTTGAAAAAAAGATGTTCTCTCAGTGGCTTTCAAGTTTATTCTAGTGGGTGGAATATCTTGGTCTGTAAGATATTCAAATAGAGAGTTTGTGGGATGTGTGAAGTGTGTTTGAGTGATTGTGTGATTGTGTGATATTTTAAGTGAGCTTCAATGAGTTTGACATGTTGTTTGCTTTGTTTTTGATTTTTTTTTAGCTTTTAAATGTTATGTTTGGATGAGTTTGTGGGATTCGAAACATGTTTGAGTGAGTTTATGGGATGTGGGTTGAGTTTGATTAAATTAAGAACTTTTGGGTGAGTTTTTGGGCTTTAAAAATTGTTTGGATAAGTTAGGCATGTATTTGTTGGCTTTTAACGGTCAATTTATGTGCGATTGTAAGCTTTGAAGTGTGTTTGAGTGAGTTTGGAGTGAGTTAGACACGTTAGAGTGAATTTGTGAAATTTGAAGTGTGTTGAGGTGAATTTGTTGGATTTGGGAGGGTGATTGCATGATTTTGTTGAATTTATAAAGTGTGGGCACTTTTAGGCCACTTAGAATGTTTAACTTCTTCTAGTATGATGTGATAATGAACTTTAAGATGTATTTTAAACTTATTGGTCAAGGAGGAGACTTTATGGTAATGTGGTTGCTACCCTTTGATAGGACCAAAATAGTCCTATTTTATTACCTCTAATTTAAGCTTGTTAGAGGAATTTTATGTTTTATTTGTCTTACTTACAGGTACTTCGAGCTTAGGCGATGTCGGGAGCCAGCCACGCAAATTGGTGTTAATTCGGGCCAATTATGGAGTTTTGGAGCCATCTCGGTGTTCTTGGACGGTGAGATGGTGAAAAGACCCAAGTGAATTTAAGCGAGCTTGAAGAACGACACCAAGAATCAAAGGTTGAAGCCCCATACCGAGAAATAACGAGACAAAACTGAGAAAAAAGGCAGCAAGGCTCAGATTAGGGATGGCGTCGAGACGTTGCCCCTAATGTCTCGACGCCGATGCGATCTCGACACATAATGCAAAGTTTGTGGCGTCGAGACGCCGAGGCTGGTGTCTTGACGCTACGACATTTTCTATAAATATAGTGTTGGGTTTTATGCCCTAAAACTCGTAGATAGTGAATGTAAAACAAATTGTATACTTGTTTCAATAAAGTGTTATTGAGTTTCTACAATAAAGTGTTATTGTTAAATATTGCACAATTTGACCCAAATCCAATAAACTAAGATCCAAGGTTGTTTGTATGTAATTTGAAACTAGTATGTGGGGACATACGGGGATTGATGTTCAAGTAACAACCTAAAAGGTCTATAGTACAAGGATAAGGTTGGGTGCCTTATCCTGGTAACACTATGAGATACGACCCGCTTTGAAATTTGATACAGATGTATTGATCCAAAACGTCCATATAGTAGACATGCAAGCGGGGGTATCCTATGCAATGAGTTTGCATAAGACCGGACCACGAAATAGTCAACCATTAGTTATAACACCGTTAACTAGTTAGGTTACTGTTTCAATAGGATGACCTAGGTAACTCAGTCTTAATCTTGAGTGTGTCATGAACTCCTTCTCATGAGGGATTTTCCTTTGATTAGCACGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGATAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGAAATTCACTCCTTCCCGCTTCTAGGAGAAGTAGATGAGTGTTCCCTTAAGTGGTGACTCCAGGACTTGAACAAAGGGATCCCGCCCTCTCATTGGCCCGATAGGGACTTTCTGTTTAAAGGTTGGACCATAAACAGGTTGTTCATTAGAGGAGCGCCGGTACTTAAGGAGACAGATGTAACACAGGGGTAAAACGGTAATTTGACCCAGCTGTGATTACGAACACTCGTGAAGGATTGACTTACCGGCATAGGTCTACATCCATGGACACAGAAATGTTCTACAATGAGAAGAGTTCAGCTGTGGGTCTTTAGTGGAATGACCCACAGTTAATGAATATTGGTTAACTTGATTAATGAGTTTAATCAGTTAACCTCATATCATTGGAGCTTCTGATCTGTAGGTCCATTAGGTCCCCTGCTAGCTCATAAAGAGTAATTAGGAACAAATATATCTTGAGAGAATTTGAATAGTTCAAATTCATATTGGGAATTAAGTTAATTGTTTGAGATACAAATTAATATAATGTATAGTGATGCATTAAAATATAAATCTAATTTGAAATTAAACTTTATTATATTGAGAGATTGATATATTTGAAAGAGTTCAAATATATGTCTAATTAAATATATGGTATTTAATTAGAAGATGAATTAATTAATTATTCAATTTAGTTTAAATTAAATGAGATTTAGTTAAACTATAGTCTATGAGGGAATTATTAGAATATGATTCTAATATGTAATTAATTGAATATGGGAGATATTTAATTAATTGTAAAATTAATTAATTATTGAAATTACTTAATTGATTAGTTTAATTGAATTAATTAAATGTGATTTAATTAAAAAATATTTTGTGAGGAAATTACATTTAAATAAGATTTAAATGTGCATGAGATGAATTAATTAATATGATTAATTAATTAACATTTAATATGATTAGTTAATTATCATTTAATTAATTGATTTAATCAATTAATTAATTGATCTTGATCTAACGGTCAAGATTGTTTCCTAACCTCACATTAGGGTTTCGTCTCTTATAAAAGGAAAGGTTATGAGAACCCTAGCCCTCAGGTCTCATTCTAGCCTCCCTCACATATTCTCTCAAGAACTCTAGAGAGAAATTTTCTCTCTTAGAGTTTTTTCCAATCAAGATTAGTGGTCCCACAACTACGTTCCTAATCTCAGAGAATAGCAGGGTAGCCTCGTGGTGGTGTCCGTTGAAGTATTCAGAGTCGTCAACGGAGGTATGTTTTTCACCGCTTAACCTTTTGCCAATGTATTGGTATTTTGTAGAACAAAATTAATTTACGAACGGTCCAATTGCTTCCGCTGTAACGGAATTGGGGAATTCCAATCCTTCAATTGGTATCAGAGCCGATCGTATGCTTGATTTTGTTTTACAAAAATTGCGTTGGTTTTTGGTGGGATCGATTTGCATTATGAATGTGGTTTGCTTTAAAGACTGTTTTGGTATTTTTTGGCATTAGATTTACAAATTTCCTATGATTTGATCATGTAAGGGCCCATGTTTTTGGGGCAAAATTGTTGTAAATCGAGTCTTATAAGTCCGTGTCTAGAGATTTAGGATCAATTTGTTGATCGGTGTTCGAATCGGGGTTGAAATCGAAGAAGAACGACTGCTGGAATCGAAGACAGTATGCTGCCCAGAGGCGTAGTGTCGCGACCCTACTCAACAGAGTCGCAACGCTAAGGAACAGGCGTTGGAAAAATTGGGTCAGCGTCGGGACGCTGTGCCTTCAACGTCTCGAAGCTGGCGACAATGCGGTCAATTACGCGTGAGGTTTCCAAAGGTTACGAATAAATAAATATATTTTTGCGTTCATCAATGATCGAACACAGGGTGTTGGAGCAGGTGGTTCGCGCACTTGTCTAGCATCCGTTTGGGCACGAGTTTGAGCTGGTACTGAGACGTTTTTTTTTAAATCCGCGTCCAGCTGCTAAGTGGTTAGTTTTGGTTCGGTTCAGGTGGTTAGCGGCCCGGTTCATGATGGTTCGGTCCGGTTCTCTGAGCAGTTGGTCTGGTTCGAGAGTTGTGGTTCCGGTTTGGGCCATTCTGACACGGTTTGGGCTTGTTTTGAGCGGTTCGAGGCGGTTTAG

mRNA sequence

ATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGTGGGCCGTATCACATAGTGTCACCAGGATAAGGTACTTCGAGCTTAGGCGATGTCGGGAGCCAGCCACGCAAATTGGTGTTAATTCGGGCCAATTATGGAGTTTTGGAGCCATCTCGGTGTTCTTGGACGCACGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGATAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGAAATTCACTCCTTCCCGCTTCTAGGAGAAGTAGATGAGTCTGTGATTACGAACACTCGTGAAGGATTGACTTACCGGCATAGGTCTACATCCATGGACACAGAAATGTTCTACAATGAGAAGAGTTCAGCTGGTAGCCTCGTGGTGGTGTCCGTTGAAGTATTCAGAGTCGTCAACGGAGCGTCGGGACGCTGTGCCTTCAACGTCTCGAAGCTGGCGACAATGCGGTCAATTACGCGTGAGGTGGTTAGCGGCCCGGTTCATGATGGTTCGGTCCGGTTCTCTGAGCAGTTGGTCTGGTTCGAGAGTTGTGGTTCCGGTTTGGGCCATTCTGACACGGTTTGGGCTTGTTTTGAGCGGTTCGAGGCGGTTTAG

Coding sequence (CDS)

ATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGTGGGCCGTATCACATAGTGTCACCAGGATAAGGTACTTCGAGCTTAGGCGATGTCGGGAGCCAGCCACGCAAATTGGTGTTAATTCGGGCCAATTATGGAGTTTTGGAGCCATCTCGGTGTTCTTGGACGCACGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGATAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGAAATTCACTCCTTCCCGCTTCTAGGAGAAGTAGATGAGTCTGTGATTACGAACACTCGTGAAGGATTGACTTACCGGCATAGGTCTACATCCATGGACACAGAAATGTTCTACAATGAGAAGAGTTCAGCTGGTAGCCTCGTGGTGGTGTCCGTTGAAGTATTCAGAGTCGTCAACGGAGCGTCGGGACGCTGTGCCTTCAACGTCTCGAAGCTGGCGACAATGCGGTCAATTACGCGTGAGGTGGTTAGCGGCCCGGTTCATGATGGTTCGGTCCGGTTCTCTGAGCAGTTGGTCTGGTTCGAGAGTTGTGGTTCCGGTTTGGGCCATTCTGACACGGTTTGGGCTTGTTTTGAGCGGTTCGAGGCGGTTTAG

Protein sequence

MSPTWMLWIIASVSNTRWAVSHSVTRIRYFELRRCREPATQIGVNSGQLWSFGAISVFLDARVRVANTPTQYAFLFGDKTEWEAGDMTTQEEIHSFPLLGEVDESVITNTREGLTYRHRSTSMDTEMFYNEKSSAGSLVVVSVEVFRVVNGASGRCAFNVSKLATMRSITREVVSGPVHDGSVRFSEQLVWFESCGSGLGHSDTVWACFERFEAV
Homology
[Close]
BLAST of Spg003877 vs. NCBI nr
Match: KAA0065950.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK30278.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-06
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 0 

Query: 62  RVRVANTPTQYAFLFGDKTEWEAGDMTTQEEIHSFPLLG 101
           +VRVA  PTQYA+ FGDKTEW AG++ TQ+ IHSFPLLG
Sbjct: 96  KVRVARLPTQYAYHFGDKTEWGAGNIITQDGIHSFPLLG 134

[Close]
BLAST of Spg003877 vs. NCBI nr
Match: KAA0040839.1 (uncharacterized protein E6C27_scaffold333G00600 [Cucumis melo var. makuwa] >TYK17815.1 uncharacterized protein E5676_scaffold306G00640 [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 4.2e-06
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 0 

Query: 62  RVRVANTPTQYAFLFGDKTEWEAGDMTTQEEIHSFPLLGEVDES 106
           +VRVA  PTQYA+ FGDKT+W AG++ TQ+EIHSF  LG +  S
Sbjct: 25  KVRVAKLPTQYAYHFGDKTKWGAGNIITQDEIHSFATLGSIKSS 68

[Close]
BLAST of Spg003877 vs. NCBI nr
Match: KAA0043328.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-05
Identity = 31/59 (52.54%), Postives = 37/59 (62.71%), Query Frame = 0 

Query: 44  VNSGQLWSFGAISVFLDARVRVANTPTQYAFLFGDKTEWEAGDMTTQEEIHSFPLLGEV 103
           V  G L S G      D  +RVA  PTQYA+ F DKTEW AG++ TQ+ IHSFP LG +
Sbjct: 154 VFEGHLESLG----LRDMYIRVAKLPTQYAYHFEDKTEWGAGNIITQDGIHSFPPLGSI 208

[Close]
BLAST of Spg003877 vs. NCBI nr
Match: KAA0025994.1 (retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 2.7e-05
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 63  VRVANTPTQYAFLFGDKTEWEAGDMTTQEEIHSFPLLG 101
           VRVA  PTQYA+ FGDKTEW AG+  TQ+ IHSFP LG
Sbjct: 223 VRVARLPTQYAYHFGDKTEWGAGNTITQDGIHSFPPLG 260

[Close]
BLAST of Spg003877 vs. NCBI nr
Match: TYK27885.1 (retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 4.7e-05
Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 0 

Query: 60  DARVRVANTPTQYAFLFGDKTEWEAGDMTTQEEIHSFPLLGEVDE 105
           D  +RVA  PTQYA+ F DKTEW AG++ TQ+ IH FP LG VD+
Sbjct: 81  DMYIRVAKFPTQYAYHFEDKTEWGAGNIITQDGIHFFPPLGYVDK 125

[Close]
BLAST of Spg003877 vs. ExPASy TrEMBL
Match: A0A5A7VFG5 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold344G00390 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.4e-07
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 0 

Query: 62  RVRVANTPTQYAFLFGDKTEWEAGDMTTQEEIHSFPLLG 101
           +VRVA  PTQYA+ FGDKTEW AG++ TQ+ IHSFPLLG
Sbjct: 96  KVRVARLPTQYAYHFGDKTEWGAGNIITQDGIHSFPLLG 134

[Close]
BLAST of Spg003877 vs. ExPASy TrEMBL
Match: A0A5A7THR9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00640 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.1e-06
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 0 

Query: 62  RVRVANTPTQYAFLFGDKTEWEAGDMTTQEEIHSFPLLGEVDES 106
           +VRVA  PTQYA+ FGDKT+W AG++ TQ+EIHSF  LG +  S
Sbjct: 25  KVRVAKLPTQYAYHFGDKTKWGAGNIITQDEIHSFATLGSIKSS 68

[Close]
BLAST of Spg003877 vs. ExPASy TrEMBL
Match: A0A5A7TKJ4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G002390 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.0e-06
Identity = 31/59 (52.54%), Postives = 37/59 (62.71%), Query Frame = 0 

Query: 44  VNSGQLWSFGAISVFLDARVRVANTPTQYAFLFGDKTEWEAGDMTTQEEIHSFPLLGEV 103
           V  G L S G      D  +RVA  PTQYA+ F DKTEW AG++ TQ+ IHSFP LG +
Sbjct: 154 VFEGHLESLG----LRDMYIRVAKLPTQYAYHFEDKTEWGAGNIITQDGIHSFPPLGSI 208

[Close]
BLAST of Spg003877 vs. ExPASy TrEMBL
Match: A0A5A7SJY0 (Retrotransposon protein putative ty3-gypsy sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G003160 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-05
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 63  VRVANTPTQYAFLFGDKTEWEAGDMTTQEEIHSFPLLG 101
           VRVA  PTQYA+ FGDKTEW AG+  TQ+ IHSFP LG
Sbjct: 223 VRVARLPTQYAYHFGDKTEWGAGNTITQDGIHSFPPLG 260

[Close]
BLAST of Spg003877 vs. ExPASy TrEMBL
Match: A0A5D3DX33 (Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00690 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.3e-05
Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 0 

Query: 60  DARVRVANTPTQYAFLFGDKTEWEAGDMTTQEEIHSFPLLGEVDE 105
           D  +RVA  PTQYA+ F DKTEW AG++ TQ+ IH FP LG VD+
Sbjct: 81  DMYIRVAKFPTQYAYHFEDKTEWGAGNIITQDGIHFFPPLGYVDK 125

The following BLAST results are available for this feature:
BLAST of Spg003877 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0065950.11.1e-0671.79ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK30278.1 ty1-cop... [more]
KAA0040839.14.2e-0661.36uncharacterized protein E6C27_scaffold333G00600 [Cucumis melo var. makuwa] >TYK1... [more]
KAA0043328.11.2e-0552.54gag/pol protein [Cucumis melo var. makuwa][more]
KAA0025994.12.7e-0571.05retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa][more]
TYK27885.14.7e-0560.00retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. m... [more]
BLAST of Spg003877 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg003877 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VFG55.4e-0771.79Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7THR92.1e-0661.36Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TKJ46.0e-0652.54Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G0023... [more]
A0A5A7SJY01.3e-0571.05Retrotransposon protein putative ty3-gypsy sub-class OS=Cucumis melo var. makuwa... [more]
A0A5D3DX332.3e-0560.00Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var.... [more]
BLAST of Spg003877 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg003877.1Spg003877.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding