Spg003806 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg003806
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	40S ribosomal protein S24
Location	scaffold4: 45851979 .. 45853904 (-)
RNA-Seq Expression	Spg003806
Synteny	Spg003806

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATAGAAAGCCCAAAACCCTAAGGCTCCAATGACTTTATTAACCAGCTAGGGTTTTGCCGCCTTCTCTTTTATCATCCCAAATCAGGTCTCAGAGCTGCCGTTCCTCTGCGCCTTCGCCTTCTTCGAGCTCCAAGCTTTTCATCCTCTTCGGAGCACCTGCAGCCATGGCGGACAAAGCTGTCACTATCCGGACCAGGAAGTTCATGACCAACAGGCTCCTCTCCAGAAAGCAATTCGTGAGTTTCTCAGATCTTACTGCTTCGTTTTTGCTTTCCGCATTCCTTTTTCCTTTTCGATTTTTGTTAGCCTCCGATTATCAGTCATTCTGTGGCGTTTGGTTCTTGTCTGTGAACTTAACTTGGAACTGCACTTGTATGTTTTTTCTTTTAATTTGGGTTTTGGTATTTGAGTTTGGACTTCGTTAGACTGTGGATTCTGGGTATATTGCTGAGTTGCTTTTGTTTGATTCTGAGAATGTTTCTCTTTTGTATCATCTAAAACCCTAATGTCTTCAGTAAGTCAGAAGTTTTTAGTTTCTCTTTGATCTGGAGTTTAGGGTTTTTTGTGTTGCTGCGTCTCTAATGACCGTGAATAATTGCTTTAGGTTTGGCGATTTCTGTTTCTTGATAGCTTAGGGACTTCTATTTGATTGTTTTTTATCCTTTTAAAGTTTTTTAATGTTATAATTTTCTCCATTTTAATGGGGTTGGAAGAGGTTTTGAAGTCGTTTGTAACATTCCTGTCCCGTGTTTAATGCAGATCATTGATGTTCTTCACCCAGGACGACCCAATGTCTCAAAGGTAAACCCTTTACCAGTTCATCTTTTTTTTTGTCTTTGGTTGAATATATGTTGTTTCACTTTTCGTAAATGTCTTCAAGATGTATAACATACACAAAATTCAAATGAATACCACATGAATCCAAACAGTATGTTTGATTGTGTTCTCCCTCCAATGTAATATATTTCTGCTCCAGTTGAACAGCTTTTGTCTTTGAACCCTTCAACCAATACTCGCTTTTCTAAAATGATTCTTGGGTTTCATTTTCCTTTTTGTATTGTTCTGGCTTTCGAGCCGCTGAACTATTGTGTTTGTGTTTATGGTGCTCATAATGTTCTATGTTTCTATTTCTTGGTCTCAAGGCTGAGCTGAAGGAGAAGTTGGCCAGAATCTATGATGTGAAAGACCCAAATGCCATCTTTGTTTTCAAGTTCAGAACTCACTTTGGTGGTGGAAAATCTACTGGGTTCGGTTTGATCTATGATTCTGTCGAGAATGCGAAGAAGTATGAACCAAAATACAGGCTAATCAGGGTAATTTACAATCTCCATTTAAGCAAAATTTCTACGATTATCCTCTTAAGTTTAGCTCTCTCCATTGAATGACATTACTCAAGCTTAACTTTCCATGTGTCAGAATGGACTTGACACTAAGGTAGAAAAATCAAGGAAGCAAATGAAGGAAAGGAAGAATAGGGCCAAGAAAATCCGTGGAGTTAAGAAGGTAAATAAATATTTCTGGCTAGTTGATGATCTTGAATGATAAATTTACCTGCAAATTGAACATTACCATTTACACCACTATTTTATATCTTTTTACAGACCAAGGCTTCAGATGCTGCCAAGGGAGGAAAGAAGAAATGAGATTGTTGGAATTTTGTGCCCATCAGCAAGGATCATCTGCAGAATTGTGTTTTCTTTTTATTAGTCTCTTTTAGTTTTCTTTTTTACTCCTAAATTAAATTATGTTAATCAGTGATTTTGGTTGTTTGGTGACCAATGATATGAAAACTTAGTTCTTTGCAGAGGACAAAATTTTTGACATTACAGGAAATATATTTCCTTGTTTTTCATCTTTTGGTAGACCATCAAGTTCCATTGTTGGTTGGGATATTCCAAGTTTTATCAAACTGCTATCAGTTGTCA

mRNA sequence

ATGGCGGACAAAGCTGTCACTATCCGGACCAGGAAGTTCATGACCAACAGGCTCCTCTCCAGAAAGCAATTCACTGTGGATTCTGGGTATATTGCTGAGTTGCTTTTGTTTGATTCTGAGAATATCATTGATGTTCTTCACCCAGGACGACCCAATGTCTCAAAGGCTGAGCTGAAGGAGAAGTTGGCCAGAATCTATGATGTGAAAGACCCAAATGCCATCTTTGTTTTCAAGTTCAGAACTCACTTTGGTGGTGGAAAATCTACTGGGTTCGGTTTGATCTATGATTCTGTCGAGAATGCGAAGAAGTATGAACCAAAATACAGGCTAATCAGGAATGGACTTGACACTAAGGTAGAAAAATCAAGGAAGCAAATGAAGGAAAGGAAGAATAGGGCCAAGAAAATCCGTGGAGTTAAGAAGACCAAGGCTTCAGATGCTGCCAAGGGAGGAAAGAAGAAATGA

Coding sequence (CDS)

ATGGCGGACAAAGCTGTCACTATCCGGACCAGGAAGTTCATGACCAACAGGCTCCTCTCCAGAAAGCAATTCACTGTGGATTCTGGGTATATTGCTGAGTTGCTTTTGTTTGATTCTGAGAATATCATTGATGTTCTTCACCCAGGACGACCCAATGTCTCAAAGGCTGAGCTGAAGGAGAAGTTGGCCAGAATCTATGATGTGAAAGACCCAAATGCCATCTTTGTTTTCAAGTTCAGAACTCACTTTGGTGGTGGAAAATCTACTGGGTTCGGTTTGATCTATGATTCTGTCGAGAATGCGAAGAAGTATGAACCAAAATACAGGCTAATCAGGAATGGACTTGACACTAAGGTAGAAAAATCAAGGAAGCAAATGAAGGAAAGGAAGAATAGGGCCAAGAAAATCCGTGGAGTTAAGAAGACCAAGGCTTCAGATGCTGCCAAGGGAGGAAAGAAGAAATGA

Protein sequence

MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK

Homology

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BLAST of Spg003806 vs. NCBI nr
Match: XP_004139219.1 (40S ribosomal protein S24-1 [Cucumis sativus] >KGN60830.1 hypothetical protein Csa_019211 [Cucumis sativus])

HSP 1 Score: 248.1 bits (632), Expect = 5.1e-62
Identity = 135/154 (87.66%), Postives = 136/154 (88.31%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKE 60
           MADKAVTIRTRKFMTNRLLSRKQF                 +IDVLHPGRPNVSKAELKE
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQF-----------------VIDVLHPGRPNVSKAELKE 60

Query: 61  KLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVE 120
           KL RIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVE
Sbjct: 61  KLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVE 120

Query: 121 KSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK 155
           KSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
Sbjct: 121 KSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK 137

[Close]

BLAST of Spg003806 vs. NCBI nr
Match: XP_008455742.1 (PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo] >XP_038889626.1 40S ribosomal protein S24-1 [Benincasa hispida] >ADN33912.1 40S ribosomal protein s24 [Cucumis melo subsp. melo] >KAA0063627.1 40S ribosomal protein S24-1 [Cucumis melo var. makuwa] >TYK18399.1 40S ribosomal protein S24-1 [Cucumis melo var. makuwa])

HSP 1 Score: 247.7 bits (631), Expect = 6.7e-62
Identity = 136/154 (88.31%), Postives = 136/154 (88.31%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKE 60
           MADKAVTIRTRKFMTNRLLSRKQF                 IIDVLHPGRPNVSKAELKE
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQF-----------------IIDVLHPGRPNVSKAELKE 60

Query: 61  KLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVE 120
           KLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVE
Sbjct: 61  KLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVE 120

Query: 121 KSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK 155
           KSRKQMKERKNRAKKIRGVKKTKASDAAK GKKK
Sbjct: 121 KSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK 137

[Close]

BLAST of Spg003806 vs. NCBI nr
Match: XP_004142519.1 (40S ribosomal protein S24-1 [Cucumis sativus] >KGN66808.1 hypothetical protein Csa_007581 [Cucumis sativus])

HSP 1 Score: 246.5 bits (628), Expect = 1.5e-61
Identity = 135/154 (87.66%), Postives = 136/154 (88.31%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKE 60
           MADKAVTIRTRKFMTNRLLSRKQF                 +IDVLHPGRPNVSKAELKE
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQF-----------------VIDVLHPGRPNVSKAELKE 60

Query: 61  KLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVE 120
           KLARIYDVKD NAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVE
Sbjct: 61  KLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVE 120

Query: 121 KSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK 155
           KSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
Sbjct: 121 KSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK 137

[Close]

BLAST of Spg003806 vs. NCBI nr
Match: XP_022946610.1 (40S ribosomal protein S24-1 [Cucurbita moschata] >XP_023545845.1 40S ribosomal protein S24-1 [Cucurbita pepo subsp. pepo] >KAG6599291.1 40S ribosomal protein S24-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030289.1 40S ribosomal protein S24-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 246.1 bits (627), Expect = 1.9e-61
Identity = 134/154 (87.01%), Postives = 136/154 (88.31%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKE 60
           MADKAVTIRTRKFMTNRLLSRKQF                 +IDVLHPGRPNVSKAELKE
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQF-----------------VIDVLHPGRPNVSKAELKE 60

Query: 61  KLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVE 120
           KLARIYDVKDPN+IFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVE
Sbjct: 61  KLARIYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVE 120

Query: 121 KSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK 155
           KSRKQMKERKNRAKKIRGVKKTKASDAAK GKKK
Sbjct: 121 KSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK 137

[Close]

BLAST of Spg003806 vs. NCBI nr
Match: XP_022143165.1 (40S ribosomal protein S24-1 [Momordica charantia])

HSP 1 Score: 246.1 bits (627), Expect = 1.9e-61
Identity = 134/154 (87.01%), Postives = 136/154 (88.31%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKE 60
           MADKAVTIRTRKFMTNRLLSRKQF                 +IDVLHPGRPNVSKAELKE
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQF-----------------VIDVLHPGRPNVSKAELKE 60

Query: 61  KLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVE 120
           KL+RIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVE
Sbjct: 61  KLSRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVE 120

Query: 121 KSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK 155
           KSRKQMKERKNRAKKIRGVKKTKASDAAK GKKK
Sbjct: 121 KSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK 137

[Close]

BLAST of Spg003806 vs. ExPASy Swiss-Prot
Match: Q9SS17 (40S ribosomal protein S24-1 OS=Arabidopsis thaliana OX=3702 GN=RPS24A PE=2 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.3e-57
Identity = 119/149 (79.87%), Postives = 129/149 (86.58%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKE 60
           MA+KAVTIRTRKFMTNRLLSRKQF                 +IDVLHPGR NVSKAELKE
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQF-----------------VIDVLHPGRANVSKAELKE 60

Query: 61  KLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVE 120
           KLAR+Y+VKDPNAIFVFKFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDTK+E
Sbjct: 61  KLARMYEVKDPNAIFVFKFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIE 120

Query: 121 KSRKQMKERKNRAKKIRGVKKTKASDAAK 150
           KSRKQ+KERKNRAKKIRGVKKTKA DA K
Sbjct: 121 KSRKQIKERKNRAKKIRGVKKTKAGDAKK 132

[Close]

BLAST of Spg003806 vs. ExPASy Swiss-Prot
Match: Q8LC83 (40S ribosomal protein S24-2 OS=Arabidopsis thaliana OX=3702 GN=RPS24B PE=2 SV=2)

HSP 1 Score: 217.2 bits (552), Expect = 1.3e-55
Identity = 115/149 (77.18%), Postives = 126/149 (84.56%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKE 60
           MA+KAVTIRTR FMTNRLL+RKQF                 +IDVLHPGR NVSKAELKE
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQF-----------------VIDVLHPGRANVSKAELKE 60

Query: 61  KLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVE 120
           KLAR+Y+VKDPNAIF FKFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDTK+E
Sbjct: 61  KLARMYEVKDPNAIFCFKFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIE 120

Query: 121 KSRKQMKERKNRAKKIRGVKKTKASDAAK 150
           KSRKQ+KERKNRAKKIRGVKKTKA D  K
Sbjct: 121 KSRKQIKERKNRAKKIRGVKKTKAGDTKK 132

[Close]

BLAST of Spg003806 vs. ExPASy Swiss-Prot
Match: Q962Q6 (40S ribosomal protein S24 OS=Spodoptera frugiperda OX=7108 GN=RpS24 PE=2 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 3.8e-36
Identity = 84/149 (56.38%), Postives = 105/149 (70.47%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKE 60
           M +   TIRTRKFMTNRLL+RKQ                  + DVLHPG+P VSK E++E
Sbjct: 1   MTEGTATIRTRKFMTNRLLARKQM-----------------VCDVLHPGKPTVSKTEIRE 60

Query: 61  KLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVE 120
           KLA++Y V  P+ +FVF F+T+FGGGKSTGF LIYD+++ AKK+EPK+RL R+GL  K  
Sbjct: 61  KLAKMYKV-TPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKR 120

Query: 121 KSRKQMKERKNRAKKIRGVKKTKASDAAK 150
            +RKQ KERKNR KK+RG KK+K   AAK
Sbjct: 121 PTRKQRKERKNRMKKVRGTKKSKVGAAAK 131

[Close]

BLAST of Spg003806 vs. ExPASy Swiss-Prot
Match: Q56JU9 (40S ribosomal protein S24 OS=Bos taurus OX=9913 GN=RPS24 PE=2 SV=2)

HSP 1 Score: 144.4 bits (363), Expect = 1.0e-33
Identity = 85/149 (57.05%), Postives = 100/149 (67.11%), Query Frame = 0


Query: 6   VTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARI 65
           VTIRTRKFMTNRLL RKQ                  +IDVLHPG+  V K E++EKLA++
Sbjct: 5   VTIRTRKFMTNRLLQRKQM-----------------VIDVLHPGKATVPKTEIREKLAKM 64

Query: 66  YDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQ 125
           Y    P+ IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ
Sbjct: 65  YKT-TPDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQ 124

Query: 126 MKERKNRAKKIRGVKKTKASDAAKGGKKK 155
            KERKNR KK+RG  K         GKKK
Sbjct: 125 RKERKNRMKKVRGTAKANVG----AGKKK 131

[Close]

BLAST of Spg003806 vs. ExPASy Swiss-Prot
Match: P62847 (40S ribosomal protein S24 OS=Homo sapiens OX=9606 GN=RPS24 PE=1 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.0e-33
Identity = 82/144 (56.94%), Postives = 97/144 (67.36%), Query Frame = 0


Query: 6   VTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARI 65
           VTIRTRKFMTNRLL RKQ                  +IDVLHPG+  V K E++EKLA++
Sbjct: 5   VTIRTRKFMTNRLLQRKQM-----------------VIDVLHPGKATVPKTEIREKLAKM 64

Query: 66  YDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQ 125
           Y    P+ IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ
Sbjct: 65  YKT-TPDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQ 124

Query: 126 MKERKNRAKKIRGVKKTKASDAAK 150
            KERKNR KK+RG  K       K
Sbjct: 125 RKERKNRMKKVRGTAKANVGAGKK 130

[Close]

BLAST of Spg003806 vs. ExPASy TrEMBL
Match: A0A0A0LFK1 (40S ribosomal protein S24 OS=Cucumis sativus OX=3659 GN=Csa_2G012120 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.5e-62
Identity = 135/154 (87.66%), Postives = 136/154 (88.31%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKE 60
           MADKAVTIRTRKFMTNRLLSRKQF                 +IDVLHPGRPNVSKAELKE
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQF-----------------VIDVLHPGRPNVSKAELKE 60

Query: 61  KLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVE 120
           KL RIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVE
Sbjct: 61  KLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVE 120

Query: 121 KSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK 155
           KSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
Sbjct: 121 KSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK 137

[Close]

BLAST of Spg003806 vs. ExPASy TrEMBL
Match: A0A5D3D4C1 (40S ribosomal protein S24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001230 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 3.2e-62
Identity = 136/154 (88.31%), Postives = 136/154 (88.31%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKE 60
           MADKAVTIRTRKFMTNRLLSRKQF                 IIDVLHPGRPNVSKAELKE
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQF-----------------IIDVLHPGRPNVSKAELKE 60

Query: 61  KLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVE 120
           KLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVE
Sbjct: 61  KLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVE 120

Query: 121 KSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK 155
           KSRKQMKERKNRAKKIRGVKKTKASDAAK GKKK
Sbjct: 121 KSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK 137

[Close]

BLAST of Spg003806 vs. ExPASy TrEMBL
Match: E5GBS0 (40S ribosomal protein S24 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 3.2e-62
Identity = 136/154 (88.31%), Postives = 136/154 (88.31%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKE 60
           MADKAVTIRTRKFMTNRLLSRKQF                 IIDVLHPGRPNVSKAELKE
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQF-----------------IIDVLHPGRPNVSKAELKE 60

Query: 61  KLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVE 120
           KLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVE
Sbjct: 61  KLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVE 120

Query: 121 KSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK 155
           KSRKQMKERKNRAKKIRGVKKTKASDAAK GKKK
Sbjct: 121 KSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK 137

[Close]

BLAST of Spg003806 vs. ExPASy TrEMBL
Match: A0A1S3C1J8 (40S ribosomal protein S24 OS=Cucumis melo OX=3656 GN=LOC103495842 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 3.2e-62
Identity = 136/154 (88.31%), Postives = 136/154 (88.31%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKE 60
           MADKAVTIRTRKFMTNRLLSRKQF                 IIDVLHPGRPNVSKAELKE
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQF-----------------IIDVLHPGRPNVSKAELKE 60

Query: 61  KLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVE 120
           KLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVE
Sbjct: 61  KLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVE 120

Query: 121 KSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK 155
           KSRKQMKERKNRAKKIRGVKKTKASDAAK GKKK
Sbjct: 121 KSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK 137

[Close]

BLAST of Spg003806 vs. ExPASy TrEMBL
Match: A0A0A0LYE3 (40S ribosomal protein S24 OS=Cucumis sativus OX=3659 GN=Csa_1G696420 PE=3 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 7.2e-62
Identity = 135/154 (87.66%), Postives = 136/154 (88.31%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKE 60
           MADKAVTIRTRKFMTNRLLSRKQF                 +IDVLHPGRPNVSKAELKE
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQF-----------------VIDVLHPGRPNVSKAELKE 60

Query: 61  KLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVE 120
           KLARIYDVKD NAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVE
Sbjct: 61  KLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVE 120

Query: 121 KSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK 155
           KSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
Sbjct: 121 KSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK 137

[Close]

BLAST of Spg003806 vs. TAIR 10
Match: AT3G04920.1 (Ribosomal protein S24e family protein )

HSP 1 Score: 223.0 bits (567), Expect = 1.6e-58
Identity = 119/149 (79.87%), Postives = 129/149 (86.58%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKE 60
           MA+KAVTIRTRKFMTNRLLSRKQF                 +IDVLHPGR NVSKAELKE
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQF-----------------VIDVLHPGRANVSKAELKE 60

Query: 61  KLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVE 120
           KLAR+Y+VKDPNAIFVFKFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDTK+E
Sbjct: 61  KLARMYEVKDPNAIFVFKFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIE 120

Query: 121 KSRKQMKERKNRAKKIRGVKKTKASDAAK 150
           KSRKQ+KERKNRAKKIRGVKKTKA DA K
Sbjct: 121 KSRKQIKERKNRAKKIRGVKKTKAGDAKK 132

[Close]

BLAST of Spg003806 vs. TAIR 10
Match: AT5G28060.1 (Ribosomal protein S24e family protein )

HSP 1 Score: 217.2 bits (552), Expect = 9.0e-57
Identity = 115/149 (77.18%), Postives = 126/149 (84.56%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKE 60
           MA+KAVTIRTR FMTNRLL+RKQF                 +IDVLHPGR NVSKAELKE
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQF-----------------VIDVLHPGRANVSKAELKE 60

Query: 61  KLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVE 120
           KLAR+Y+VKDPNAIF FKFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDTK+E
Sbjct: 61  KLARMYEVKDPNAIFCFKFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIE 120

Query: 121 KSRKQMKERKNRAKKIRGVKKTKASDAAK 150
           KSRKQ+KERKNRAKKIRGVKKTKA D  K
Sbjct: 121 KSRKQIKERKNRAKKIRGVKKTKAGDTKK 132

The following BLAST results are available for this feature:

BLAST of Spg003806 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139219.1	5.1e-62	87.66	40S ribosomal protein S24-1 [Cucumis sativus] >KGN60830.1 hypothetical protein C...	[more]
XP_008455742.1	6.7e-62	88.31	PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo] >XP_038889626.1 40S riboso...	[more]
XP_004142519.1	1.5e-61	87.66	40S ribosomal protein S24-1 [Cucumis sativus] >KGN66808.1 hypothetical protein C...	[more]
XP_022946610.1	1.9e-61	87.01	40S ribosomal protein S24-1 [Cucurbita moschata] >XP_023545845.1 40S ribosomal p...	[more]
XP_022143165.1	1.9e-61	87.01	40S ribosomal protein S24-1 [Momordica charantia]	[more]

BLAST of Spg003806 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SS17	2.3e-57	79.87	40S ribosomal protein S24-1 OS=Arabidopsis thaliana OX=3702 GN=RPS24A PE=2 SV=1	[more]
Q8LC83	1.3e-55	77.18	40S ribosomal protein S24-2 OS=Arabidopsis thaliana OX=3702 GN=RPS24B PE=2 SV=2	[more]
Q962Q6	3.8e-36	56.38	40S ribosomal protein S24 OS=Spodoptera frugiperda OX=7108 GN=RpS24 PE=2 SV=1	[more]
Q56JU9	1.0e-33	57.05	40S ribosomal protein S24 OS=Bos taurus OX=9913 GN=RPS24 PE=2 SV=2	[more]
P62847	1.0e-33	56.94	40S ribosomal protein S24 OS=Homo sapiens OX=9606 GN=RPS24 PE=1 SV=1	[more]

BLAST of Spg003806 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFK1	2.5e-62	87.66	40S ribosomal protein S24 OS=Cucumis sativus OX=3659 GN=Csa_2G012120 PE=3 SV=1	[more]
A0A5D3D4C1	3.2e-62	88.31	40S ribosomal protein S24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
E5GBS0	3.2e-62	88.31	40S ribosomal protein S24 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A1S3C1J8	3.2e-62	88.31	40S ribosomal protein S24 OS=Cucumis melo OX=3656 GN=LOC103495842 PE=3 SV=1	[more]
A0A0A0LYE3	7.2e-62	87.66	40S ribosomal protein S24 OS=Cucumis sativus OX=3659 GN=Csa_1G696420 PE=3 SV=1	[more]

BLAST of Spg003806 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04920.1	1.6e-58	79.87	Ribosomal protein S24e family protein	[more]
AT5G28060.1	9.0e-57	77.18	Ribosomal protein S24e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001976	Ribosomal protein S24e	PFAM	PF01282	Ribosomal_S24e	coord: 43..120 e-value: 8.7E-36 score: 121.8
IPR001976	Ribosomal protein S24e	PANTHER	PTHR10496	40S RIBOSOMAL PROTEIN S24	coord: 32..154 coord: 1..27
IPR001976	Ribosomal protein S24e	HAMAP	MF_00545	Ribosomal_S24e	coord: 4..123 score: 18.247641
None	No IPR available	GENE3D	3.30.70.3370		coord: 1..32 e-value: 6.4E-7 score: 31.0 coord: 33..149 e-value: 1.5E-46 score: 159.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..154
None	No IPR available	PANTHER	PTHR10496:SF18	40S RIBOSOMAL PROTEIN S24	coord: 32..154
None	No IPR available	PANTHER	PTHR10496:SF18	40S RIBOSOMAL PROTEIN S24	coord: 1..27
IPR018098	Ribosomal S24e conserved site	PROSITE	PS00529	RIBOSOMAL_S24E	coord: 83..105
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 6..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg003806.1	Spg003806.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome