Spg003748 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg003748
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RNase H domain-containing protein
Location	scaffold4: 46750056 .. 46752800 (+)
RNA-Seq Expression	Spg003748
Synteny	Spg003748

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGACTCTGCTGCCCGGTCCAAGACGGAGAACCTGCCTAGTCCGAGGCCTTGGATCCCTCCCCTCTTTGATGCGTGGAAGATCAATTCCGATGCTTCTTGGTCGGAAGAGAAGAAGCATGGTGGTTTGGGGTGGATAGCGCGCGACTCGACATGTTCTTTGATCTATGCAGGGTTCAAGCAAGTTAGCAGGAGATGGTCGATTAAGTGTTTAGAGTTGGAGGCCATGGCAGTGGGTTTGAGGAACTTACTGAATAACATGCAGAGGCCGTTCCCCCAGATCATTGTGGAGGCGGACTCGTCTGAAGCCATCGCCATCCTTAATCATCAGTCTGATGACAATTCGGAAGCCAGTGTCTTGGCTTCGAACGTCGCCGTTGTTGCCAGTCAGATTGGGGAGATCTCGTTTTCGTTCAGCCCTCGATCGACTAATTTGGAAGCGCATTCGTTGGCGCGTTTTGCCGTTGACCCCTCCCTGTCGGGGCATCATATCGTTTTTTTGGATTCTTCCAATTCGGAAGATGGTTTTTTTTGTGTTGAGGCTCTGCCTCCCTCTTTAGACTCTTCAATTCTTAGGAAGAGTAGTTGTATGTCGCTGTTGGTGTTTAATGCATTTATTCCTTTTCAAAAAAAAAAAAAAAATTAAGAATACGCATGGTAAGATATTTTTTTTTAACCATCATAAATAATCACGTCACACTCAATAAGAAAATCCATGTGATAAGGTTCCATTTTTATAGTACACTACTTTAAAATGTCACACCATTATTCTACTATTCAATTTCAATTTCATAATTAAGTAGAAATTCTATTGAAAAAACCTTGAAGTATTATAAATGAAACATTTTGAAAAGACTAAAAAATAAAATATACTTCGATATACTATGCCTTAATTTCATCAAAAGGATCTATACAATAATTTTATTTTTTGTAATCCACTCTCAAACTTTTTTGAAAACGGAAAGATGCAGTCTTCCAAAAATCTAATTTTTGTTCTTTATTAATATTTTAATTTAAATGAAGAAAATATAGATATATGCAATTTTCATAACTCCAAACTTTTGTTTTAAAAAGTAGATTCATCCTCAAATGGTGTTGTACAATTTAGATTAGATTTGTTTTTTTGGTTTAAATATTATTTTAGTCCCTCTCCTTTTTGTTTTTTCACTTTGATTCCTTTCAAAACGTACATTGGTTTATTTTCAAAACGTCCATTTTCTACTTTGATTTATTTTGGTTAATTACTTTCAAAGTGTTCGTTTTTGTCCCTGTACTTTTAAAAAGTGACCAATTCGGTCTCTATTTGTAAAATTGAAGTGCAAATTCTATACACAATGAAAACCCTTTAATACAAATTTATGACAATATTTCAAGGAATTTAATTAGTGAAACGTGCTATTAAAATTATAATTGACAAAATGTGAAAAAAAATGAAAATGATGATACCAAACGGGACGTTTTAAAAAGTATAAAGACCAAAATCAACATAGTGAAAATACATGGATAAAAAGGAACTAAACCATCAAAATTTATGATAATGAATTACACTTTTTCGTTATAAATTGTGAAAAATATACCATCTTTTTTTTTTTTTTGAGACAAAATATACCATCTCTTCTTATGTAATCATTTTATTTTTAAAAGAATAAAATACAAATGACATAATATATTATAAATTATAATAGTGTAAAATAGCAATTATACAAAATTATACAAAATTTATAATAAAATGTAGGTTCATAAATTAATTAATAAAATTTAATATTCAACCAAATATTTAATTAATAATTAGGTTAAAAATCACTTTTGGTCCCTAAACTTTCATAAAAGTAAAACCTTTGATTTGTAACGATTTAATCATTGTACTTTCAATTTTGTAACAATTTAGTCTCTTAACTTTAATAAGTAACAATTTAGTCCATATACTTTCAAATTTGTATCAATTTAGTTTCTATACTTTCAAATTAGTAACAATTTAATCCAAAAAAATTCATCAAAATTAAATGTCTATTTTTATTATTTAATGATTAAACTTTGTAGCTTATAAATATATTGGGTCCCAAATTAGTTAATTAATATATCTAGGTAAGAAATTTCATTAAATCTTTACATTAAATTTTCATGATAGGGACCAAATCGTTACAAAATTGAAACTACAGGAACTAAATTATTACTTATTAAAATTTAGGGACTAAATTGTTACGAGATCAAAAGCACAAGGACTAAATCGTTACAAATTAAAAATATAAAGACTAAATCATTATAAATGAAAGTTCAGGGACTAAATTGTTACTTTTATGAAAGTTTAGGAACTAAAATGATTTTTAACCTAATAACTATCACTATTTTATTGTATAAGAATATCCCGTTCAATTCACTTTTTCTTTTTGCCGAAGAAGGAACAGAAAAACCCTAAAAATGAGAGTATAAAAAAAAAAAAAAAACAACGTCATCCGAAGATTAGGGGGGGCATAAGAGTAATTTCAAATCCAAAATCCACTATATAAGTTTAAAGGCGGTTTTAATTCAGAAGAGAGCAGAAACGAAGAAAATCAGAAAAAAACAGAGAGAAAAAAAGAAAATCAGCAAATCGCCGATCGGAAATTGTAGGGTTTCAGAACTCTGCAGGGAATGCGGAGAGATGAAATTGGCTGCGTTGATTCAGTCTGAGTTGATCGGAAGATCCAAAACCTTCATCATCGGCGGCAGAAATTGCCACCGGAAACACGTCGAAGACGGGTGA

mRNA sequence

ATGAACGACTCTGCTGCCCGGTCCAAGACGGAGAACCTGCCTAGTCCGAGGCCTTGGATCCCTCCCCTCTTTGATGCGTGGAAGATCAATTCCGATGCTTCTTGGTCGGAAGAGAAGAAGCATGGTGGTTTGGGGTGGATAGCGCGCGACTCGACATGTTCTTTGATCTATGCAGGGTTCAAGCAAGTTAGCAGGAGATGGTCGATTAAGTGTTTAGAGTTGGAGGCCATGGCAGTGGGTTTGAGGAACTTACTGAATAACATGCAGAGGCCGTTCCCCCAGATCATTGTGGAGGCGGACTCGTCTGAAGCCATCGCCATCCTTAATCATCAGTCTGATGACAATTCGGAAGCCAGTGTCTTGGCTTCGAACGTCGCCGTTGTTGCCAGTCAGATTGGGGAGATCTCGTTTTCGTTCAGCCCTCGATCGACTAATTTGGAAGCGCATTCGTTGGCGCGTTTTGCCGTTGACCCCTCCCTGTCGGGGCATCATATCGTTTTTTTGGATTCTTCCAATTCGGAAGATGGTTTTTTTTGTGTTGAGGCTCTGCCTCCCTCTTTAGACTCTTCAATTCTTAGGAAGAGTAGTTAA

Coding sequence (CDS)

ATGAACGACTCTGCTGCCCGGTCCAAGACGGAGAACCTGCCTAGTCCGAGGCCTTGGATCCCTCCCCTCTTTGATGCGTGGAAGATCAATTCCGATGCTTCTTGGTCGGAAGAGAAGAAGCATGGTGGTTTGGGGTGGATAGCGCGCGACTCGACATGTTCTTTGATCTATGCAGGGTTCAAGCAAGTTAGCAGGAGATGGTCGATTAAGTGTTTAGAGTTGGAGGCCATGGCAGTGGGTTTGAGGAACTTACTGAATAACATGCAGAGGCCGTTCCCCCAGATCATTGTGGAGGCGGACTCGTCTGAAGCCATCGCCATCCTTAATCATCAGTCTGATGACAATTCGGAAGCCAGTGTCTTGGCTTCGAACGTCGCCGTTGTTGCCAGTCAGATTGGGGAGATCTCGTTTTCGTTCAGCCCTCGATCGACTAATTTGGAAGCGCATTCGTTGGCGCGTTTTGCCGTTGACCCCTCCCTGTCGGGGCATCATATCGTTTTTTTGGATTCTTCCAATTCGGAAGATGGTTTTTTTTGTGTTGAGGCTCTGCCTCCCTCTTTAGACTCTTCAATTCTTAGGAAGAGTAGTTAA

Protein sequence

MNDSAARSKTENLPSPRPWIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMAVGLRNLLNNMQRPFPQIIVEADSSEAIAILNHQSDDNSEASVLASNVAVVASQIGEISFSFSPRSTNLEAHSLARFAVDPSLSGHHIVFLDSSNSEDGFFCVEALPPSLDSSILRKSS

Homology

[Close]

BLAST of Spg003748 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 85.1 bits (209), Expect = 7.3e-13
Identity = 50/147 (34.01%), Postives = 75/147 (51.02%), Query Frame = 0


Query: 19  WIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMA 78
           W PP  ++WK+N+DA+W  +   GG+GWI RD    +I A  + +    +I  LE+ A+ 
Sbjct: 79  WKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAIC 138

Query: 79  VGLRNLLNNMQRPFPQ-----IIVEADSSEAIAILNHQSDDNSEASVLASNVAVVASQIG 138
            GLR +     RP  Q     I +E+DS EAI +L+ Q  D +E   L   +  +   + 
Sbjct: 139 EGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMK 198

Query: 139 EISFSFSPRSTNLEAHSLARFAVDPSL 161
            +S     R  N  AH LAR A++  L
Sbjct: 199 IVSMRHISREANKVAHDLARRAMENDL 225

[Close]

BLAST of Spg003748 vs. NCBI nr
Match: CAB4274760.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 84.7 bits (208), Expect = 9.5e-13
Identity = 51/152 (33.55%), Postives = 80/152 (52.63%), Query Frame = 0


Query: 14   PSPRPWIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLE 73
            P+P  W  P     K+N DA+WS ++  GG+GW+ RDS   L+ AG +      S   +E
Sbjct: 1122 PAPLSWCKPSLGLLKVNCDAAWSAQRMGGGVGWVIRDSFGLLLCAGGQGDLHGSSAIMME 1181

Query: 74   LEAMAVGLRNLLNNMQRPFPQIIVEADSSEAIAILNHQSDDNSEASVLASNVAVVASQIG 133
            L A+   L    N        IIVE+DS + I +LN ++  +S+   +  ++  + + + 
Sbjct: 1182 LLAIRHALSECAN---FHLTDIIVESDSQKGILMLNGRATVDSDLEGIVFDIRQLVASLS 1241

Query: 134  EISFSFSPRSTNLEAHSLARFAVDPSLSGHHI 166
             +SF F+PRS N  AHS+A FA      G+H+
Sbjct: 1242 RVSFVFAPRSCNQAAHSVAGFA--SKQGGNHV 1268

[Close]

BLAST of Spg003748 vs. NCBI nr
Match: CAB4274761.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 84.7 bits (208), Expect = 9.5e-13
Identity = 51/152 (33.55%), Postives = 80/152 (52.63%), Query Frame = 0


Query: 14  PSPRPWIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLE 73
           P+P  W  P     K+N DA+WS ++  GG+GW+ RDS   L+ AG +      S   +E
Sbjct: 254 PAPLSWCKPSLGLLKVNCDAAWSAQRMGGGVGWVIRDSFGLLLCAGGQGDLHGSSAIMME 313

Query: 74  LEAMAVGLRNLLNNMQRPFPQIIVEADSSEAIAILNHQSDDNSEASVLASNVAVVASQIG 133
           L A+   L    N        IIVE+DS + I +LN ++  +S+   +  ++  + + + 
Sbjct: 314 LLAIRHALSECAN---FHLTDIIVESDSQKGILMLNGRATVDSDLEGIVFDIRQLVASLS 373

Query: 134 EISFSFSPRSTNLEAHSLARFAVDPSLSGHHI 166
            +SF F+PRS N  AHS+A FA      G+H+
Sbjct: 374 RVSFVFAPRSCNQAAHSVAGFA--SKQGGNHV 400

[Close]

BLAST of Spg003748 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 83.2 bits (204), Expect = 2.8e-12
Identity = 48/138 (34.78%), Postives = 75/138 (54.35%), Query Frame = 0


Query: 19  WIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMA 78
           W PP    W +N+DASWS+    GG+GWI R     ++ AG + V    ++K LE  A+ 
Sbjct: 71  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAIL 130

Query: 79  VGLRNLLN-NMQRPFPQIIVEADSSEAIAILNHQSDDNSEASVLASNVAVVASQIGEISF 138
            GLRNL N  + RP   + +E DS+E  ++LN + +D ++   +   +  +      ++F
Sbjct: 131 EGLRNLTNLGVLRP---LHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAF 190

Query: 139 SFSPRSTNLEAHSLARFA 156
           +   R TN  AHSLA+ A
Sbjct: 191 AKVGRETNGCAHSLAQRA 205

[Close]

BLAST of Spg003748 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 82.8 bits (203), Expect = 3.6e-12
Identity = 48/142 (33.80%), Postives = 74/142 (52.11%), Query Frame = 0


Query: 19  WIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMA 78
           W PP  ++WK+N++A+W  +   GG+GWI RD    +I A  + +    +I  LE+ A+ 
Sbjct: 79  WKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAIC 138

Query: 79  VGLRNLLNNMQRPFPQIIVEADSSEAIAILNHQSDDNSEASVLASNVAVVASQIGEISFS 138
            GLR +     RP   I +E+DS EAI +L+ Q  D +E   L   +  +   +  +S  
Sbjct: 139 EGLRAIRQEHCRP---IHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDMEIVSMR 198

Query: 139 FSPRSTNLEAHSLARFAVDPSL 161
              R  N  AH LAR A++  L
Sbjct: 199 HISREANKVAHGLARRAMENDL 217

[Close]

BLAST of Spg003748 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.5e-13
Identity = 50/147 (34.01%), Postives = 75/147 (51.02%), Query Frame = 0


Query: 19  WIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMA 78
           W PP  ++WK+N+DA+W  +   GG+GWI RD    +I A  + +    +I  LE+ A+ 
Sbjct: 79  WKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAIC 138

Query: 79  VGLRNLLNNMQRPFPQ-----IIVEADSSEAIAILNHQSDDNSEASVLASNVAVVASQIG 138
            GLR +     RP  Q     I +E+DS EAI +L+ Q  D +E   L   +  +   + 
Sbjct: 139 EGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMK 198

Query: 139 EISFSFSPRSTNLEAHSLARFAVDPSL 161
            +S     R  N  AH LAR A++  L
Sbjct: 199 IVSMRHISREANKVAHDLARRAMENDL 225

[Close]

BLAST of Spg003748 vs. ExPASy TrEMBL
Match: A0A6J5UE59 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23353 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.6e-13
Identity = 51/152 (33.55%), Postives = 80/152 (52.63%), Query Frame = 0


Query: 14   PSPRPWIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLE 73
            P+P  W  P     K+N DA+WS ++  GG+GW+ RDS   L+ AG +      S   +E
Sbjct: 1122 PAPLSWCKPSLGLLKVNCDAAWSAQRMGGGVGWVIRDSFGLLLCAGGQGDLHGSSAIMME 1181

Query: 74   LEAMAVGLRNLLNNMQRPFPQIIVEADSSEAIAILNHQSDDNSEASVLASNVAVVASQIG 133
            L A+   L    N        IIVE+DS + I +LN ++  +S+   +  ++  + + + 
Sbjct: 1182 LLAIRHALSECAN---FHLTDIIVESDSQKGILMLNGRATVDSDLEGIVFDIRQLVASLS 1241

Query: 134  EISFSFSPRSTNLEAHSLARFAVDPSLSGHHI 166
             +SF F+PRS N  AHS+A FA      G+H+
Sbjct: 1242 RVSFVFAPRSCNQAAHSVAGFA--SKQGGNHV 1268

[Close]

BLAST of Spg003748 vs. ExPASy TrEMBL
Match: A0A6J5UF50 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23354 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.6e-13
Identity = 51/152 (33.55%), Postives = 80/152 (52.63%), Query Frame = 0


Query: 14  PSPRPWIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLE 73
           P+P  W  P     K+N DA+WS ++  GG+GW+ RDS   L+ AG +      S   +E
Sbjct: 254 PAPLSWCKPSLGLLKVNCDAAWSAQRMGGGVGWVIRDSFGLLLCAGGQGDLHGSSAIMME 313

Query: 74  LEAMAVGLRNLLNNMQRPFPQIIVEADSSEAIAILNHQSDDNSEASVLASNVAVVASQIG 133
           L A+   L    N        IIVE+DS + I +LN ++  +S+   +  ++  + + + 
Sbjct: 314 LLAIRHALSECAN---FHLTDIIVESDSQKGILMLNGRATVDSDLEGIVFDIRQLVASLS 373

Query: 134 EISFSFSPRSTNLEAHSLARFAVDPSLSGHHI 166
            +SF F+PRS N  AHS+A FA      G+H+
Sbjct: 374 RVSFVFAPRSCNQAAHSVAGFA--SKQGGNHV 400

[Close]

BLAST of Spg003748 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-12
Identity = 48/138 (34.78%), Postives = 75/138 (54.35%), Query Frame = 0


Query: 19  WIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMA 78
           W PP    W +N+DASWS+    GG+GWI R     ++ AG + V    ++K LE  A+ 
Sbjct: 71  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAIL 130

Query: 79  VGLRNLLN-NMQRPFPQIIVEADSSEAIAILNHQSDDNSEASVLASNVAVVASQIGEISF 138
            GLRNL N  + RP   + +E DS+E  ++LN + +D ++   +   +  +      ++F
Sbjct: 131 EGLRNLTNLGVLRP---LHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAF 190

Query: 139 SFSPRSTNLEAHSLARFA 156
           +   R TN  AHSLA+ A
Sbjct: 191 AKVGRETNGCAHSLAQRA 205

[Close]

BLAST of Spg003748 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.7e-12
Identity = 48/142 (33.80%), Postives = 74/142 (52.11%), Query Frame = 0


Query: 19  WIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMA 78
           W PP  ++WK+N++A+W  +   GG+GWI RD    +I A  + +    +I  LE+ A+ 
Sbjct: 79  WKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAIC 138

Query: 79  VGLRNLLNNMQRPFPQIIVEADSSEAIAILNHQSDDNSEASVLASNVAVVASQIGEISFS 138
            GLR +     RP   I +E+DS EAI +L+ Q  D +E   L   +  +   +  +S  
Sbjct: 139 EGLRAIRQEHCRP---IHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDMEIVSMR 198

Query: 139 FSPRSTNLEAHSLARFAVDPSL 161
              R  N  AH LAR A++  L
Sbjct: 199 HISREANKVAHGLARRAMENDL 217

[Close]

BLAST of Spg003748 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-09
Identity = 43/151 (28.48%), Postives = 71/151 (47.02%), Query Frame = 0


Query: 3   DSAARSKTENLPSPRPWIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQ 62
           +S       N  S   W PP     K N+DA+W+ + +  G+GW+ R+    + + G + 
Sbjct: 404 ESCGTKPQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARA 463

Query: 63  VSRRWSIKCLELEAMAVGLRNLLNNMQRPFPQIIVEADSSEAIAILNHQSDDNSEASVLA 122
           + +  S+   ELEAM   + +L    +  +  +I E+DS   I ILN+     S    + 
Sbjct: 464 LPKLKSVLEAELEAMRWAVLSL---SRFQYNYVIFESDSQVLIEILNNDEIWPSLKPTI- 523

Query: 123 SNVAVVASQIGEISFSFSPRSTNLEAHSLAR 154
            ++  + SQ  E+ F F PR  N  A  +AR
Sbjct: 524 QDLQRLLSQFTEVKFVFIPREGNTLAERVAR 550

[Close]

BLAST of Spg003748 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 58.5 bits (140), Expect = 6.8e-09
Identity = 44/149 (29.53%), Postives = 72/149 (48.32%), Query Frame = 0


Query: 19  WIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMA 78
           W  P +   K N+DA+W  E    G+GWI R+ +  +++ G + + R  ++   ELEA  
Sbjct: 137 WKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELEA-- 196

Query: 79  VGLRNLLNNMQR-PFPQIIVEADSSEAIAILNHQSDDN-SEASVLASNVAVVASQIGEIS 138
             LR  +  M R  + +II E+D+   + +LN  SDD          ++  +     E+ 
Sbjct: 197 --LRWAVLTMSRFNYKRIIFESDAQALVNLLN--SDDFWPTLQPALEDIQQLLHHFEEVK 256

Query: 139 FSFSPRSTNLEAHSLARFAV-----DPSL 161
           F F+PR  N  A  +AR ++     DP L
Sbjct: 257 FEFTPRGGNKVADRIARESISFSNYDPKL 279

[Close]

BLAST of Spg003748 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 45.4 bits (106), Expect = 5.9e-05
Identity = 37/138 (26.81%), Postives = 56/138 (40.58%), Query Frame = 0


Query: 19  WIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMA 78
           W PP  D  K N DAS  E     GLGWI R+S  ++I  G  +   R + +  E   + 
Sbjct: 105 WSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECSTLI 164

Query: 79  VGLRNLLNNMQRPFPQIIVEADSSEAIAILNHQSDDNSEASVLASNVAVVASQIGEISFS 138
             ++       +   ++I E D+     ++N +S  N         +         I FS
Sbjct: 165 WAIQASYGFGHK---KVIFEGDNQTITRMINTKS-SNPRLQHFLDTIQSWIPSFESIEFS 224

Query: 139 FSPRSTNLEAHSLARFAV 157
           F  R  N  A  LA+ A+
Sbjct: 225 FKHREQNGCADFLAKQAI 238

The following BLAST results are available for this feature:

BLAST of Spg003748 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156777.1	7.3e-13	34.01	uncharacterized protein LOC111023608 [Momordica charantia]	[more]
CAB4274760.1	9.5e-13	33.55	unnamed protein product [Prunus armeniaca]	[more]
CAB4274761.1	9.5e-13	33.55	unnamed protein product [Prunus armeniaca]	[more]
XP_022155262.1	2.8e-12	34.78	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
XP_022143535.1	3.6e-12	33.80	uncharacterized protein LOC111013412 [Momordica charantia]	[more]

BLAST of Spg003748 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg003748 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DSV1	3.5e-13	34.01	uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J5UE59	4.6e-13	33.55	Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=...	[more]
A0A6J5UF50	4.6e-13	33.55	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23354 PE=4 S...	[more]
A0A6J1DNV9	1.3e-12	34.78	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1CP26	1.7e-12	33.80	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]

BLAST of Spg003748 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29090.1	1.8e-09	28.48	Ribonuclease H-like superfamily protein	[more]
AT2G34320.1	6.8e-09	29.53	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G65005.1	5.9e-05	26.81	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 26..160 e-value: 7.8E-12 score: 47.3
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 30..155 e-value: 3.8E-16 score: 59.0
None	No IPR available	PANTHER	PTHR33033:SF67	SUBFAMILY NOT NAMED	coord: 19..158
None	No IPR available	PANTHER	PTHR33033	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 19..158
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 29..153 e-value: 1.22752E-16 score: 70.4208
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 26..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg003748.1	Spg003748.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity