Spg003723 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg003723
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	E3 ubiquitin-protein ligase RING1-like
Location	scaffold4: 48539574 .. 48539939 (-)
RNA-Seq Expression	Spg003723
Synteny	Spg003723

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCTGCCTTGCCTGAAACAACAACATCAGCTTCTGCAGCGAGCTACATCATGGACATCGAGTCGATGTTCGACCTCGACACGGTCCTCACCGGAGCCGATGACTTCTACTACGATAAGACCGTCACACCGCCGCCATCGGTGGTGGTTACCGACTTGCCGACGGTGGCAGCTGACGACGTATGTGCGGTTTGCATGGAGGATTTCCGGCCGGACGAAGGTGGTAAAATGATCCCCTGCGGCCACGTGTACCATCAAACTTGTCTATCCTCATGGCTCTCCGTCGGCGACTTTTGCCCTCTCTGCCGCCGCCATGTCTCCTCCGGCGACAAGACGGAGGCGCCGAAGACCGTACAAGTTTAG

mRNA sequence

ATGGCCGCTGCCTTGCCTGAAACAACAACATCAGCTTCTGCAGCGAGCTACATCATGGACATCGAGTCGATGTTCGACCTCGACACGGTCCTCACCGGAGCCGATGACTTCTACTACGATAAGACCGTCACACCGCCGCCATCGGTGGTGGTTACCGACTTGCCGACGGTGGCAGCTGACGACGTATGTGCGGTTTGCATGGAGGATTTCCGGCCGGACGAAGGTGGTAAAATGATCCCCTGCGGCCACGTGTACCATCAAACTTGTCTATCCTCATGGCTCTCCGTCGGCGACTTTTGCCCTCTCTGCCGCCGCCATGTCTCCTCCGGCGACAAGACGGAGGCGCCGAAGACCGTACAAGTTTAG

Coding sequence (CDS)

ATGGCCGCTGCCTTGCCTGAAACAACAACATCAGCTTCTGCAGCGAGCTACATCATGGACATCGAGTCGATGTTCGACCTCGACACGGTCCTCACCGGAGCCGATGACTTCTACTACGATAAGACCGTCACACCGCCGCCATCGGTGGTGGTTACCGACTTGCCGACGGTGGCAGCTGACGACGTATGTGCGGTTTGCATGGAGGATTTCCGGCCGGACGAAGGTGGTAAAATGATCCCCTGCGGCCACGTGTACCATCAAACTTGTCTATCCTCATGGCTCTCCGTCGGCGACTTTTGCCCTCTCTGCCGCCGCCATGTCTCCTCCGGCGACAAGACGGAGGCGCCGAAGACCGTACAAGTTTAG

Protein sequence

MAAALPETTTSASAASYIMDIESMFDLDTVLTGADDFYYDKTVTPPPSVVVTDLPTVAADDVCAVCMEDFRPDEGGKMIPCGHVYHQTCLSSWLSVGDFCPLCRRHVSSGDKTEAPKTVQV

Homology

[Close]

BLAST of Spg003723 vs. NCBI nr
Match: XP_023537996.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 199.9 bits (507), Expect = 1.3e-47
Identity = 95/121 (78.51%), Postives = 103/121 (85.12%), Query Frame = 0


Query: 1   MAAALPETTTSASAASYIMDIESMFDLDTVLTGADDFYYDKTVTPPPSVVVTDLPTVAAD 60
           MAA LPE T SA AASYIMD+ESMFDLDTVLTGADD+Y D+ +T PPSVVV DLPTV  D
Sbjct: 1   MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTD 60

Query: 61  DVCAVCMEDFRPDEGGKMIPCGHVYHQTCLSSWLSVGDFCPLCRRHVSSGDKTEAPKTVQ 120
           DVCAVCME+FR DEGGK IPCGHVYHQTC+SSWLSVGD CPLCR HVSS +K+E  K VQ
Sbjct: 61  DVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGDCCPLCRCHVSSDNKSETAKPVQ 120

Query: 121 V 122
           V
Sbjct: 121 V 121

[Close]

BLAST of Spg003723 vs. NCBI nr
Match: XP_038877426.1 (E3 ubiquitin-protein ligase RNF126-like [Benincasa hispida])

HSP 1 Score: 198.4 bits (503), Expect = 3.6e-47
Identity = 96/121 (79.34%), Postives = 103/121 (85.12%), Query Frame = 0


Query: 1   MAAALPETTTSASAASYIMDIESMFDLDTVLTGADDFYYDKTVTPPPSVVVTDLPTVAAD 60
           MA  LPE TTSA AASYIMDIESMFDLDTVLTGADDFYY+KTV  PP VVV DLPTVA  
Sbjct: 1   MATVLPE-TTSAYAASYIMDIESMFDLDTVLTGADDFYYNKTVVAPPPVVVADLPTVAGK 60

Query: 61  DVCAVCMEDFRPDEGGKMIPCGHVYHQTCLSSWLSVGDFCPLCRRHVSSGDKTEAPKTVQ 120
           DVCAVC+EDF PDE GK IPCGHVYHQ+CLSSWLSVGD CPLCRRH++S ++ EAPKT  
Sbjct: 61  DVCAVCIEDFLPDESGKQIPCGHVYHQSCLSSWLSVGDSCPLCRRHIASDEEMEAPKTET 120

Query: 121 V 122
           V
Sbjct: 121 V 120

[Close]

BLAST of Spg003723 vs. NCBI nr
Match: KAG7021303.1 (E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 195.3 bits (495), Expect = 3.1e-46
Identity = 95/122 (77.87%), Postives = 103/122 (84.43%), Query Frame = 0


Query: 1   MAAALPETTTSASAASYIMDIESMFDLDTVLTGADDFYYDKTVTPPPSVVVTDLPTVAAD 60
           MAA LPE T SA AASYIMD+ESMFDLDTVLTGADD+Y D+ +T PPSVVV DLPTV  D
Sbjct: 1   MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTD 60

Query: 61  DVCAVCMEDFRPDEGGKMIPCGHVYHQTCLSSWLSV-GDFCPLCRRHVSSGDKTEAPKTV 120
           DVCAVCME+FR DEGGK IPCGHVYHQTC+SSWLSV GD CPLCR HVSS +K+E  K V
Sbjct: 61  DVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRCHVSSDNKSETAKPV 120

Query: 121 QV 122
           QV
Sbjct: 121 QV 122

[Close]

BLAST of Spg003723 vs. NCBI nr
Match: KAG6586449.1 (E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 193.7 bits (491), Expect = 9.0e-46
Identity = 94/122 (77.05%), Postives = 102/122 (83.61%), Query Frame = 0


Query: 1   MAAALPETTTSASAASYIMDIESMFDLDTVLTGADDFYYDKTVTPPPSVVVTDLPTVAAD 60
           MAA LPE T SA AASYIMD+ESMFDLDTVLTGADD+Y D+ +T PPSVVV D PTV  D
Sbjct: 1   MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADFPTVVTD 60

Query: 61  DVCAVCMEDFRPDEGGKMIPCGHVYHQTCLSSWLSV-GDFCPLCRRHVSSGDKTEAPKTV 120
           DVCAVCME+FR DEGGK IPCGHVYHQTC+SSWLSV GD CPLCR HVSS +K+E  K V
Sbjct: 61  DVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRCHVSSDNKSETAKPV 120

Query: 121 QV 122
           QV
Sbjct: 121 QV 122

[Close]

BLAST of Spg003723 vs. NCBI nr
Match: XP_022965415.1 (E3 ubiquitin-protein ligase RNF181-like [Cucurbita maxima])

HSP 1 Score: 193.4 bits (490), Expect = 1.2e-45
Identity = 94/122 (77.05%), Postives = 103/122 (84.43%), Query Frame = 0


Query: 1   MAAALPETTTSASAASYIMDIESMFDLDTVLTGADDFYYDK-TVTPPPSVVVTDLPTVAA 60
           MAA LPE T SA AASYIMD+ESMFDLDTVLTGADD+Y D+  +T PPSVVV+DLPTV  
Sbjct: 1   MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQMIITEPPSVVVSDLPTVVT 60

Query: 61  DDVCAVCMEDFRPDEGGKMIPCGHVYHQTCLSSWLSVGDFCPLCRRHVSSGDKTEAPKTV 120
           DDVCAVCME+FR DEGGK IPCGHVYHQ+C+SSWLSVGD CPLCR HVSS +K E  K V
Sbjct: 61  DDVCAVCMEEFRADEGGKQIPCGHVYHQSCISSWLSVGDCCPLCRCHVSSDNKLETTKPV 120

Query: 121 QV 122
           QV
Sbjct: 121 QV 122

[Close]

BLAST of Spg003723 vs. ExPASy Swiss-Prot
Match: Q9Y4L5 (E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens OX=9606 GN=RNF115 PE=1 SV=2)

HSP 1 Score: 65.9 bits (159), Expect = 3.7e-10
Identity = 28/85 (32.94%), Postives = 45/85 (52.94%), Query Frame = 0


Query: 45  PPPS--VVVTDLPTVAADD-------VCAVCMEDFRPDEGGKMIPCGHVYHQTCLSSWLS 104
           PPP+    +T LPTV            C VC ED+  +E  + +PC H +H +C+  WL 
Sbjct: 201 PPPADKEKITSLPTVTVTQEQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLE 260

Query: 105 VGDFCPLCRRHVSSGDKTEAPKTVQ 121
           + D CP+CR+ ++  D T   ++ +
Sbjct: 261 LHDTCPVCRKSLNGEDSTRQSQSTE 285

[Close]

BLAST of Spg003723 vs. ExPASy Swiss-Prot
Match: Q9D0C1 (E3 ubiquitin-protein ligase RNF115 OS=Mus musculus OX=10090 GN=Rnf115 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.2e-10
Identity = 28/78 (35.90%), Postives = 42/78 (53.85%), Query Frame = 0


Query: 45  PPPS--VVVTDLPTVAADD-------VCAVCMEDFRPDEGGKMIPCGHVYHQTCLSSWLS 104
           PPP+    +T LPTV            C VC ED+  +E  + +PC H +H +C+  WL 
Sbjct: 202 PPPADKEKITSLPTVTVTQEQVNTGLECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLE 261

Query: 105 VGDFCPLCRRHVSSGDKT 114
           + D CP+CR+ ++  D T
Sbjct: 262 LHDTCPVCRKSLNGEDST 279

[Close]

BLAST of Spg003723 vs. ExPASy Swiss-Prot
Match: Q9M622 (Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=RMR1 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-09
Identity = 30/85 (35.29%), Postives = 45/85 (52.94%), Query Frame = 0


Query: 41  KTVTPPPSVVVTDLPTVAADDVCAVCMEDFRPDEGGKMIPCGHVYHQTCLSSWLSV-GDF 100
           K V   P    TD     A + CA+C+ED+R  E  +++PC H +H  C+ SWL+  G  
Sbjct: 210 KLVHTLPCFTFTDSAHHKAGETCAICLEDYRFGESLRLLPCQHAFHLNCIDSWLTKWGTS 269

Query: 101 CPLCRRHV------SSGDKTEAPKT 119
           CP+C+  +      S   K E+P+T
Sbjct: 270 CPVCKHDIRTETMSSEVHKRESPRT 294

[Close]

BLAST of Spg003723 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.1e-09
Identity = 31/77 (40.26%), Postives = 41/77 (53.25%), Query Frame = 0


Query: 44  TPPPSVVVTD-LPTVAAD--------DVCAVCMEDFRPDEGGKMIPCGHVYHQTCLSSWL 103
           TPP S    D LPTV           + CAVCM++F      K +PC HV+HQ CL  WL
Sbjct: 188 TPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWL 247

Query: 104 SVGDFCPLCRRHVSSGD 112
            + + CP+CR  + + D
Sbjct: 248 ELHNSCPVCRFELPTDD 264

[Close]

BLAST of Spg003723 vs. ExPASy Swiss-Prot
Match: Q9VHI7 (E3 ubiquitin-protein ligase Iruka OS=Drosophila melanogaster OX=7227 GN=Iru PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.3e-09
Identity = 30/91 (32.97%), Postives = 54/91 (59.34%), Query Frame = 0


Query: 27  LDTVLTGADDFYYDKTVTPPP--SVVVTDLPTVA--ADDV-----CAVCMEDFRPDEGGK 86
           LDT++T        +T  PPP  +  + ++P V   A++V     C++C +DF+ DE  +
Sbjct: 210 LDTIVT--QMLNQMETSGPPPLSAQRINEIPNVQINAEEVNRKIQCSICWDDFKIDETVR 269

Query: 87  MIPCGHVYHQTCLSSWLSVGDFCPLCRRHVS 109
            +PC H+YH+ C+  WL++   CP+CR+ ++
Sbjct: 270 KLPCSHLYHENCIVPWLNLHSTCPICRKSLA 298

[Close]

BLAST of Spg003723 vs. ExPASy TrEMBL
Match: A0A6J1HNM2 (E3 ubiquitin-protein ligase RNF181-like OS=Cucurbita maxima OX=3661 GN=LOC111465331 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 5.7e-46
Identity = 94/122 (77.05%), Postives = 103/122 (84.43%), Query Frame = 0


Query: 1   MAAALPETTTSASAASYIMDIESMFDLDTVLTGADDFYYDK-TVTPPPSVVVTDLPTVAA 60
           MAA LPE T SA AASYIMD+ESMFDLDTVLTGADD+Y D+  +T PPSVVV+DLPTV  
Sbjct: 1   MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQMIITEPPSVVVSDLPTVVT 60

Query: 61  DDVCAVCMEDFRPDEGGKMIPCGHVYHQTCLSSWLSVGDFCPLCRRHVSSGDKTEAPKTV 120
           DDVCAVCME+FR DEGGK IPCGHVYHQ+C+SSWLSVGD CPLCR HVSS +K E  K V
Sbjct: 61  DDVCAVCMEEFRADEGGKQIPCGHVYHQSCISSWLSVGDCCPLCRCHVSSDNKLETTKPV 120

Query: 121 QV 122
           QV
Sbjct: 121 QV 122

[Close]

BLAST of Spg003723 vs. ExPASy TrEMBL
Match: A0A6J1FDN7 (E3 ubiquitin-protein ligase RING1-like OS=Cucurbita moschata OX=3662 GN=LOC111444430 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 5.7e-46
Identity = 94/122 (77.05%), Postives = 102/122 (83.61%), Query Frame = 0


Query: 1   MAAALPETTTSASAASYIMDIESMFDLDTVLTGADDFYYDKTVTPPPSVVVTDLPTVAAD 60
           MAA LPE T SA AA YIMD+ESMFDLDTVLTGADD+Y D+ +T PPSVVV DLPTV  D
Sbjct: 1   MAAVLPEATRSAFAARYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTD 60

Query: 61  DVCAVCMEDFRPDEGGKMIPCGHVYHQTCLSSWLSV-GDFCPLCRRHVSSGDKTEAPKTV 120
           DVCAVCME+FR DEGGK IPCGHVYHQTC+SSWLSV GD CPLCR HVSS +K+E  K V
Sbjct: 61  DVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRCHVSSDNKSETAKPV 120

Query: 121 QV 122
           QV
Sbjct: 121 QV 122

[Close]

BLAST of Spg003723 vs. ExPASy TrEMBL
Match: A0A5A7V793 (RING-H2 finger protein ATL5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00900 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.2e-45
Identity = 88/113 (77.88%), Postives = 95/113 (84.07%), Query Frame = 0


Query: 9   TTSASAASYIMDIESMFDLDTVLTGADDFYYDKTVTPPPSVVVTDLPTVAADDVCAVCME 68
           T++  AA YIMDIESMFDLDTVL+GADDFYY  T   PP VVV DLPTVA DD CAVCME
Sbjct: 3   TSANHAARYIMDIESMFDLDTVLSGADDFYYFHTAVAPPPVVVADLPTVATDDACAVCME 62

Query: 69  DFRPDEGGKMIPCGHVYHQTCLSSWLSVGDFCPLCRRHVSSGDKTEAPKTVQV 122
           DF PDEGGK IPCGHVYHQ+C+SSWLSVGD CPLCRRH++ GDKTE  KTVQV
Sbjct: 63  DFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHIAPGDKTETSKTVQV 115

[Close]

BLAST of Spg003723 vs. ExPASy TrEMBL
Match: A0A0A0LEZ1 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000920 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 9.0e-44
Identity = 89/114 (78.07%), Postives = 97/114 (85.09%), Query Frame = 0


Query: 9   TTSASAASYIMDIESMFDLDTVLTGADDFYYDKTVTPPPSVVVTDLPTV-AADDVCAVCM 68
           T++  AASYIMDIESMFDLDTVLTGADDFYY  TV  PP V+V +LPTV AADDVCAVCM
Sbjct: 3   TSANYAASYIMDIESMFDLDTVLTGADDFYYFHTVVAPPPVMVAELPTVAAADDVCAVCM 62

Query: 69  EDFRPDEGGKMIPCGHVYHQTCLSSWLSVGDFCPLCRRHVSSGDKTEAPKTVQV 122
           EDF PDEGGK IPCGHVYHQ+CLSSWLS+ D CPLCR H++ GDKTE  KTVQV
Sbjct: 63  EDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKTETSKTVQV 116

[Close]

BLAST of Spg003723 vs. ExPASy TrEMBL
Match: A0A6J1DM93 (E3 ubiquitin-protein ligase RHA1B-like OS=Momordica charantia OX=3673 GN=LOC111021870 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.4e-23
Identity = 63/106 (59.43%), Postives = 72/106 (67.92%), Query Frame = 0


Query: 3   AALPETTTSASAASYIMDIESMFDLDTVLTGADDF-YYDKTVTPPPSVVVTDLPTVAADD 62
           A L ETT + +AA     +E +FDLD VL+G DDF     T       +V DLPTV A D
Sbjct: 5   AVLAETTRNLAAA---YPMELLFDLDMVLSGDDDFGCCHVTAANSSDSIVADLPTVVA-D 64

Query: 63  VCAVCMEDFRPDEGGKMIPCGHVYHQTCLSSWLSVGDFCPLCRRHV 108
           VCAVC EDFR DEGGK IPCGHVYH+ C+SSWL+V D CPLCRR V
Sbjct: 65  VCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCPLCRRRV 106

[Close]

BLAST of Spg003723 vs. TAIR 10
Match: AT1G68180.1 (RING/U-box superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-11
Identity = 33/100 (33.00%), Postives = 55/100 (55.00%), Query Frame = 0


Query: 25  FDLDTVLTGADDFYYD----KTVTPPP----------SVVVTDLPTVAADDVCAVCMEDF 84
           F+ D ++   D+ + D      + PPP          +V++TD   +  + VCA+C E+F
Sbjct: 87  FNHDDLVYNTDEEFADVMPSVQIGPPPASQSAIEAVRTVIITD-EDLVKEKVCAICKEEF 146

Query: 85  RPDEGGKMIPCGHVYHQTCLSSWLSVGDFCPLCRRHVSSG 111
              E GK + C H+YH +C+ SWL++ + CP+CR  V+ G
Sbjct: 147 EVGEEGKELKCLHLYHSSCIVSWLNIHNTCPICRFEVNLG 185

[Close]

BLAST of Spg003723 vs. TAIR 10
Match: AT5G66160.1 (receptor homology region transmembrane domain ring H2 motif protein 1 )

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-10
Identity = 30/85 (35.29%), Postives = 45/85 (52.94%), Query Frame = 0


Query: 41  KTVTPPPSVVVTDLPTVAADDVCAVCMEDFRPDEGGKMIPCGHVYHQTCLSSWLSV-GDF 100
           K V   P    TD     A + CA+C+ED+R  E  +++PC H +H  C+ SWL+  G  
Sbjct: 210 KLVHTLPCFTFTDSAHHKAGETCAICLEDYRFGESLRLLPCQHAFHLNCIDSWLTKWGTS 269

Query: 101 CPLCRRHV------SSGDKTEAPKT 119
           CP+C+  +      S   K E+P+T
Sbjct: 270 CPVCKHDIRTETMSSEVHKRESPRT 294

[Close]

BLAST of Spg003723 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein )

HSP 1 Score: 62.4 bits (150), Expect = 2.9e-10
Identity = 31/77 (40.26%), Postives = 41/77 (53.25%), Query Frame = 0


Query: 44  TPPPSVVVTD-LPTVAAD--------DVCAVCMEDFRPDEGGKMIPCGHVYHQTCLSSWL 103
           TPP S    D LPTV           + CAVCM++F      K +PC HV+HQ CL  WL
Sbjct: 188 TPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWL 247

Query: 104 SVGDFCPLCRRHVSSGD 112
            + + CP+CR  + + D
Sbjct: 248 ELHNSCPVCRFELPTDD 264

[Close]

BLAST of Spg003723 vs. TAIR 10
Match: AT3G56580.2 (RING/U-box superfamily protein )

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-09
Identity = 22/74 (29.73%), Postives = 40/74 (54.05%), Query Frame = 0


Query: 47  PSVVVTDLPTVAADDVCAVCMEDFRPDEGGKMIPCGHVYHQTCLSSWLSVGDFCPLCRRH 106
           P++ +T     ++D  C VC ++F      K +PC H+YH  C+  WL   + CP+CR+ 
Sbjct: 170 PTIKITQKHLKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPVCRKE 229

Query: 107 VSSGDKTEAPKTVQ 121
           + S   + + ++ Q
Sbjct: 230 LPSRGSSSSTQSSQ 243

[Close]

BLAST of Spg003723 vs. TAIR 10
Match: AT3G56580.1 (RING/U-box superfamily protein )

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-09
Identity = 22/74 (29.73%), Postives = 40/74 (54.05%), Query Frame = 0


Query: 47  PSVVVTDLPTVAADDVCAVCMEDFRPDEGGKMIPCGHVYHQTCLSSWLSVGDFCPLCRRH 106
           P++ +T     ++D  C VC ++F      K +PC H+YH  C+  WL   + CP+CR+ 
Sbjct: 170 PTIKITQKHLKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPVCRKE 229

Query: 107 VSSGDKTEAPKTVQ 121
           + S   + + ++ Q
Sbjct: 230 LPSRGSSSSTQSSQ 243

The following BLAST results are available for this feature:

BLAST of Spg003723 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023537996.1	1.3e-47	78.51	E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo]	[more]
XP_038877426.1	3.6e-47	79.34	E3 ubiquitin-protein ligase RNF126-like [Benincasa hispida]	[more]
KAG7021303.1	3.1e-46	77.87	E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma ...	[more]
KAG6586449.1	9.0e-46	77.05	E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022965415.1	1.2e-45	77.05	E3 ubiquitin-protein ligase RNF181-like [Cucurbita maxima]	[more]

BLAST of Spg003723 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9Y4L5	3.7e-10	32.94	E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens OX=9606 GN=RNF115 PE=1 SV=2	[more]
Q9D0C1	8.2e-10	35.90	E3 ubiquitin-protein ligase RNF115 OS=Mus musculus OX=10090 GN=Rnf115 PE=1 SV=1	[more]
Q9M622	2.4e-09	35.29	Receptor homology region, transmembrane domain- and RING domain-containing prote...	[more]
Q8LPN7	4.1e-09	40.26	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
Q9VHI7	5.3e-09	32.97	E3 ubiquitin-protein ligase Iruka OS=Drosophila melanogaster OX=7227 GN=Iru PE=1...	[more]

BLAST of Spg003723 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HNM2	5.7e-46	77.05	E3 ubiquitin-protein ligase RNF181-like OS=Cucurbita maxima OX=3661 GN=LOC111465...	[more]
A0A6J1FDN7	5.7e-46	77.05	E3 ubiquitin-protein ligase RING1-like OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A5A7V793	2.2e-45	77.88	RING-H2 finger protein ATL5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A0A0LEZ1	9.0e-44	78.07	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000920 P...	[more]
A0A6J1DM93	1.4e-23	59.43	E3 ubiquitin-protein ligase RHA1B-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]

BLAST of Spg003723 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68180.1	1.5e-11	33.00	RING/U-box superfamily protein	[more]
AT5G66160.1	1.7e-10	35.29	receptor homology region transmembrane domain ring H2 motif protein 1	[more]
AT3G19950.1	2.9e-10	40.26	RING/U-box superfamily protein	[more]
AT3G56580.2	1.4e-09	29.73	RING/U-box superfamily protein	[more]
AT3G56580.1	1.4e-09	29.73	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 63..103 e-value: 4.8E-8 score: 42.7
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 62..104 e-value: 2.1E-11 score: 44.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 63..104 score: 12.872856
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 53..120 e-value: 1.1E-18 score: 68.2
None	No IPR available	PANTHER	PTHR15710	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	coord: 21..108
None	No IPR available	PANTHER	PTHR15710:SF74	E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE	coord: 21..108
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 58..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg003723.1	Spg003723.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0008270	zinc ion binding