Spg003624 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg003624
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Photosystem II PsbX
Location	scaffold4: 49082919 .. 49083290 (+)
RNA-Seq Expression	Spg003624
Synteny	Spg003624

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAACTTCCGCAGTTTCAATGGCGATGCCAATTACTGGTGCGACTCAGAAGAGAGCGAGGGGCTCCGAAGTCTTTGCCAAGCCATTATTGCCTTTGAGGCCTTCCAACAAGCCAACTGCTGCATCAAAATCCAGCGCCAAGTTCCAGGTGCGGGCTTCTTTGAAGGAGAAGGCGGTTGCTGGACTCGCTGCAACTGCACTGACGGCCTCCATGGTGCTTCCTGAGGTGGCTGAAGCTGCAGGGCCTGGAGTTAGTCCTTCTCTCAAGAATTTCTTGCTCAGTATTGCCGCCGGTGGAGTAGTTGTCACTGCCATCTTGGGTGCAGTTATCGGCGTCGCAAATTTCGATCCCGTCAAGCGGACCTGA

mRNA sequence

ATGGCTTCAACTTCCGCAGTTTCAATGGCGATGCCAATTACTGGTGCGACTCAGAAGAGAGCGAGGGGCTCCGAAGTCTTTGCCAAGCCATTATTGCCTTTGAGGCCTTCCAACAAGCCAACTGCTGCATCAAAATCCAGCGCCAAGTTCCAGGTGCGGGCTTCTTTGAAGGAGAAGGCGGTTGCTGGACTCGCTGCAACTGCACTGACGGCCTCCATGGTGCTTCCTGAGGTGGCTGAAGCTGCAGGGCCTGGAGTTAGTCCTTCTCTCAAGAATTTCTTGCTCAGTATTGCCGCCGGTGGAGTAGTTGTCACTGCCATCTTGGGTGCAGTTATCGGCGTCGCAAATTTCGATCCCGTCAAGCGGACCTGA

Coding sequence (CDS)

ATGGCTTCAACTTCCGCAGTTTCAATGGCGATGCCAATTACTGGTGCGACTCAGAAGAGAGCGAGGGGCTCCGAAGTCTTTGCCAAGCCATTATTGCCTTTGAGGCCTTCCAACAAGCCAACTGCTGCATCAAAATCCAGCGCCAAGTTCCAGGTGCGGGCTTCTTTGAAGGAGAAGGCGGTTGCTGGACTCGCTGCAACTGCACTGACGGCCTCCATGGTGCTTCCTGAGGTGGCTGAAGCTGCAGGGCCTGGAGTTAGTCCTTCTCTCAAGAATTTCTTGCTCAGTATTGCCGCCGGTGGAGTAGTTGTCACTGCCATCTTGGGTGCAGTTATCGGCGTCGCAAATTTCGATCCCGTCAAGCGGACCTGA

Protein sequence

MASTSAVSMAMPITGATQKRARGSEVFAKPLLPLRPSNKPTAASKSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVKRT

Homology

[Close]

BLAST of Spg003624 vs. NCBI nr
Match: XP_038890010.1 (uncharacterized protein LOC120079733 [Benincasa hispida])

HSP 1 Score: 193.7 bits (491), Expect = 9.1e-46
Identity = 113/123 (91.87%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MASTSAVSMAMPITGATQKRARGSEVFAKPLLPLRPSNKPTAASKSSAKFQVRASLKEKA 60
           MASTSA+SMAMPIT A QKRAR +E FAKP LPLRPSNKP A+S SSAKFQVRASLKEKA
Sbjct: 1   MASTSAISMAMPITNAAQKRARLAEAFAKP-LPLRPSNKPNASSNSSAKFQVRASLKEKA 60

Query: 61  VAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPV 120
           VAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPV
Sbjct: 61  VAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPV 120

Query: 121 KRT 124
           KRT
Sbjct: 121 KRT 122

[Close]

BLAST of Spg003624 vs. NCBI nr
Match: KAA0061475.1 (membrane family protein [Cucumis melo var. makuwa] >TYK10799.1 membrane family protein [Cucumis melo var. makuwa])

HSP 1 Score: 193.4 bits (490), Expect = 1.2e-45
Identity = 112/123 (91.06%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MASTSAVSMAMPITGATQKRARGSEVFAKPLLPLRPSNKPTAASKSSAKFQVRASLKEKA 60
           MASTSA+SMAMPIT A QKRAR +E FAKP LPLRPSNKP+ +S SSAKFQVRASLKEKA
Sbjct: 1   MASTSAISMAMPITNAAQKRARRAEAFAKP-LPLRPSNKPSGSSSSSAKFQVRASLKEKA 60

Query: 61  VAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPV 120
           VAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPV
Sbjct: 61  VAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPV 120

Query: 121 KRT 124
           KRT
Sbjct: 121 KRT 122

[Close]

BLAST of Spg003624 vs. NCBI nr
Match: XP_022946746.1 (uncharacterized protein LOC111450721 [Cucurbita moschata])

HSP 1 Score: 192.2 bits (487), Expect = 2.7e-45
Identity = 111/123 (90.24%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MASTSAVSMAMPITGATQKRARGSEVFAKPLLPLRPSNKPTAASKSSAKFQVRASLKEKA 60
           MASTSAVSMAMPIT ATQKRAR ++ FAK  LPLRPSNKPTA+S S AKFQVRASLKEKA
Sbjct: 1   MASTSAVSMAMPITNATQKRARSTDAFAK-ALPLRPSNKPTASSNSRAKFQVRASLKEKA 60

Query: 61  VAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPV 120
           VAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGA+IGV+NFDPV
Sbjct: 61  VAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120

Query: 121 KRT 124
           KRT
Sbjct: 121 KRT 122

[Close]

BLAST of Spg003624 vs. NCBI nr
Match: XP_022999231.1 (uncharacterized protein LOC111493667 [Cucurbita maxima] >XP_023522826.1 uncharacterized protein LOC111786846 [Cucurbita pepo subsp. pepo] >XP_023546323.1 uncharacterized protein LOC111805446 [Cucurbita pepo subsp. pepo] >XP_023546324.1 uncharacterized protein LOC111805448 [Cucurbita pepo subsp. pepo] >KAG6599523.1 hypothetical protein SDJN03_09301, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 190.3 bits (482), Expect = 1.0e-44
Identity = 110/123 (89.43%), Postives = 115/123 (93.50%), Query Frame = 0


Query: 1   MASTSAVSMAMPITGATQKRARGSEVFAKPLLPLRPSNKPTAASKSSAKFQVRASLKEKA 60
           MASTSAVSMAMPIT ATQKRAR ++ FAK  LPLRPSNKPTA+S S AKFQVRASLKEKA
Sbjct: 1   MASTSAVSMAMPITNATQKRARSTDAFAK-ALPLRPSNKPTASSNSRAKFQVRASLKEKA 60

Query: 61  VAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPV 120
           VAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVV AILGA+IGV+NFDPV
Sbjct: 61  VAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPV 120

Query: 121 KRT 124
           KRT
Sbjct: 121 KRT 122

[Close]

BLAST of Spg003624 vs. NCBI nr
Match: XP_011648590.1 (uncharacterized protein LOC105434533 [Cucumis sativus] >KGN60517.1 hypothetical protein Csa_019271 [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 1.0e-44
Identity = 111/123 (90.24%), Postives = 115/123 (93.50%), Query Frame = 0


Query: 1   MASTSAVSMAMPITGATQKRARGSEVFAKPLLPLRPSNKPTAASKSSAKFQVRASLKEKA 60
           MASTSA+SMAMPIT A QKRAR +E FAKP LPLRPSNKP+ +S SSAKFQVRASLKEKA
Sbjct: 1   MASTSAISMAMPITNAAQKRARRAEAFAKP-LPLRPSNKPSGSSSSSAKFQVRASLKEKA 60

Query: 61  VAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPV 120
           VAGLAATALTASMVLPEVAEAAG GVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPV
Sbjct: 61  VAGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPV 120

Query: 121 KRT 124
           KRT
Sbjct: 121 KRT 122

[Close]

BLAST of Spg003624 vs. ExPASy TrEMBL
Match: A0A5A7V6L0 (Membrane family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G001140 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 5.8e-46
Identity = 112/123 (91.06%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MASTSAVSMAMPITGATQKRARGSEVFAKPLLPLRPSNKPTAASKSSAKFQVRASLKEKA 60
           MASTSA+SMAMPIT A QKRAR +E FAKP LPLRPSNKP+ +S SSAKFQVRASLKEKA
Sbjct: 1   MASTSAISMAMPITNAAQKRARRAEAFAKP-LPLRPSNKPSGSSSSSAKFQVRASLKEKA 60

Query: 61  VAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPV 120
           VAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPV
Sbjct: 61  VAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPV 120

Query: 121 KRT 124
           KRT
Sbjct: 121 KRT 122

[Close]

BLAST of Spg003624 vs. ExPASy TrEMBL
Match: A0A6J1G4H3 (uncharacterized protein LOC111450721 OS=Cucurbita moschata OX=3662 GN=LOC111450721 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.3e-45
Identity = 111/123 (90.24%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MASTSAVSMAMPITGATQKRARGSEVFAKPLLPLRPSNKPTAASKSSAKFQVRASLKEKA 60
           MASTSAVSMAMPIT ATQKRAR ++ FAK  LPLRPSNKPTA+S S AKFQVRASLKEKA
Sbjct: 1   MASTSAVSMAMPITNATQKRARSTDAFAK-ALPLRPSNKPTASSNSRAKFQVRASLKEKA 60

Query: 61  VAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPV 120
           VAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGA+IGV+NFDPV
Sbjct: 61  VAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120

Query: 121 KRT 124
           KRT
Sbjct: 121 KRT 122

[Close]

BLAST of Spg003624 vs. ExPASy TrEMBL
Match: A0A6J1KCH8 (uncharacterized protein LOC111493667 OS=Cucurbita maxima OX=3661 GN=LOC111493667 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.9e-45
Identity = 110/123 (89.43%), Postives = 115/123 (93.50%), Query Frame = 0


Query: 1   MASTSAVSMAMPITGATQKRARGSEVFAKPLLPLRPSNKPTAASKSSAKFQVRASLKEKA 60
           MASTSAVSMAMPIT ATQKRAR ++ FAK  LPLRPSNKPTA+S S AKFQVRASLKEKA
Sbjct: 1   MASTSAVSMAMPITNATQKRARSTDAFAK-ALPLRPSNKPTASSNSRAKFQVRASLKEKA 60

Query: 61  VAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPV 120
           VAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVV AILGA+IGV+NFDPV
Sbjct: 61  VAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPV 120

Query: 121 KRT 124
           KRT
Sbjct: 121 KRT 122

[Close]

BLAST of Spg003624 vs. ExPASy TrEMBL
Match: A0A0A0LIL7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000260 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.9e-45
Identity = 111/123 (90.24%), Postives = 115/123 (93.50%), Query Frame = 0


Query: 1   MASTSAVSMAMPITGATQKRARGSEVFAKPLLPLRPSNKPTAASKSSAKFQVRASLKEKA 60
           MASTSA+SMAMPIT A QKRAR +E FAKP LPLRPSNKP+ +S SSAKFQVRASLKEKA
Sbjct: 1   MASTSAISMAMPITNAAQKRARRAEAFAKP-LPLRPSNKPSGSSSSSAKFQVRASLKEKA 60

Query: 61  VAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPV 120
           VAGLAATALTASMVLPEVAEAAG GVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPV
Sbjct: 61  VAGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPV 120

Query: 121 KRT 124
           KRT
Sbjct: 121 KRT 122

[Close]

BLAST of Spg003624 vs. ExPASy TrEMBL
Match: A0A1S3CAS0 (uncharacterized protein LOC103498700 OS=Cucumis melo OX=3656 GN=LOC103498700 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 6.4e-45
Identity = 110/123 (89.43%), Postives = 114/123 (92.68%), Query Frame = 0


Query: 1   MASTSAVSMAMPITGATQKRARGSEVFAKPLLPLRPSNKPTAASKSSAKFQVRASLKEKA 60
           MASTSA+SM MPIT A QKR R +E FAKP LPLRPSNKP+ +S SSAKFQVRASLKEKA
Sbjct: 1   MASTSAISMPMPITNAAQKRTRRAEAFAKP-LPLRPSNKPSGSSSSSAKFQVRASLKEKA 60

Query: 61  VAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPV 120
           VAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPV
Sbjct: 61  VAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPV 120

Query: 121 KRT 124
           KRT
Sbjct: 121 KRT 122

[Close]

BLAST of Spg003624 vs. TAIR 10
Match: AT2G06520.1 (photosystem II subunit X )

HSP 1 Score: 115.9 bits (289), Expect = 2.2e-26
Identity = 71/123 (57.72%), Postives = 91/123 (73.98%), Query Frame = 0


Query: 1   MASTSAVSMAMPITGATQKRARGSEVFAKPLLPLRPSNKPTAASKSSAKFQVRASLKEKA 60
           MASTSA+S+  P+    Q R   S  F KP LPL+PS    A    + + QV+A   +KA
Sbjct: 1   MASTSAMSLVTPL---NQTR---SSPFLKP-LPLKPSKALVATGGRAQRLQVKALKMDKA 60

Query: 61  VAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPV 120
           + G++A ALTASMV+PE+AEAAG G+SPSLKNFLLSIA+GG+V+T I+G V+GV+NFDPV
Sbjct: 61  LTGISAAALTASMVIPEIAEAAGSGISPSLKNFLLSIASGGLVLTVIIGVVVGVSNFDPV 116

Query: 121 KRT 124
           KRT
Sbjct: 121 KRT 116

The following BLAST results are available for this feature:

BLAST of Spg003624 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890010.1	9.1e-46	91.87	uncharacterized protein LOC120079733 [Benincasa hispida]	[more]
KAA0061475.1	1.2e-45	91.06	membrane family protein [Cucumis melo var. makuwa] >TYK10799.1 membrane family p...	[more]
XP_022946746.1	2.7e-45	90.24	uncharacterized protein LOC111450721 [Cucurbita moschata]	[more]
XP_022999231.1	1.0e-44	89.43	uncharacterized protein LOC111493667 [Cucurbita maxima] >XP_023522826.1 uncharac...	[more]
XP_011648590.1	1.0e-44	90.24	uncharacterized protein LOC105434533 [Cucumis sativus] >KGN60517.1 hypothetical ...	[more]

BLAST of Spg003624 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg003624 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V6L0	5.8e-46	91.06	Membrane family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1G4H3	1.3e-45	90.24	uncharacterized protein LOC111450721 OS=Cucurbita moschata OX=3662 GN=LOC1114507...	[more]
A0A6J1KCH8	4.9e-45	89.43	uncharacterized protein LOC111493667 OS=Cucurbita maxima OX=3661 GN=LOC111493667...	[more]
A0A0A0LIL7	4.9e-45	90.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000260 PE=4 SV=1	[more]
A0A1S3CAS0	6.4e-45	89.43	uncharacterized protein LOC103498700 OS=Cucumis melo OX=3656 GN=LOC103498700 PE=...	[more]

BLAST of Spg003624 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G06520.1	2.2e-26	57.72	photosystem II subunit X	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.5.510	Single helix bin	coord: 85..123 e-value: 4.8E-10 score: 41.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR34455:SF2	EXPRESSED PROTEIN	coord: 1..123
None	No IPR available	PANTHER	PTHR34455	OS07G0673550 PROTEIN	coord: 1..123
IPR009518	Photosystem II PsbX	PFAM	PF06596	PsbX	coord: 86..123 e-value: 6.6E-16 score: 58.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg003624.1	Spg003624.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0019904	protein domain specific binding