Spg003507 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg003507
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	scaffold4: 47130444 .. 47132054 (-)
RNA-Seq Expression	Spg003507
Synteny	Spg003507

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTGTCGGTAGAGAGTCTTTCTGTCGAGGTGTGCTCAATACGCTTCGGTAGAGGGTCTCCCGACTATACTTTTTTCGAATCTTCTTCCGACTTCTTAAAGCGCGTCAAGAGAGGGTCTTCCGACGTGTTTTTCCAATTCTCTTGATGCATTTACACATTGGGATCAGATACCTAATATCTTGTAGTGAAAATTGAAAGTACATGAACTAAATTGATACAAATCAAAGTTCATGGACTAAATTGTTACTTTCATGAGAGCTAGTACAAGAACCAAAAATGATTTTTAACCTAATAATAATAATAAAGAAAACAAAATTATATAAAACAAAAGCTTTTTTTTCACTCTTTCCTTCTCTCTCTCAAACTCATTGTTCTTTTTTTCCTTCTCCAGCCCTTCTCTCCCCATACCTTACTGATTTATTCTATTTATTCTCTTTTTTTTTTTTTTTTTTTCTGCTCCTTTTAATTTTTTGAGCTTCTCCTTCCTTAACAAAATCTCTCACCATTTTTTCTACAGAAGCAAACGTTTCCTCTCGACCATCCAAAGGTTCGTTACTCTCTTTTCTTTTGACTCGATTTCCCTTTTTTTTTTGTTATAACCCTTCTTCTTCTTCTTCTTCTTCTCGTTTTTACTAAATAAATCTACGAGATCTTAATTAAAAAGGACAAAAAACCATAGAGACGTGAAAAAATAAAAAAATAAAACACATATGAACAAAGTGTAAAATAGACAGAAGCAAATTTTCAATAAGCAAGAACACACATAATAACAAGTAAAAGGGAAATTTAGGGGAGAAAAAAAAACAATAATGGAAAGCAACTTTGAATACCTTGGTTTTCTATCAGTTTCCGATGCTTGGTCTCCTTTGAACCACAGATGGGACTTTCCAAAGAGACGGCCTTTTCTGGATAGGGAAATCCTTAGTTGGGAGACTGCTACTCAGTGCTTTCCTCTCCCATCTTTCTCTTCGGGGCCTGATTGTTTTATTTGGATTCATGCTACGAATGGTCTTTTCAGCACTGCCTCAGCCCGTCCTCTCTTCCAAACTATGAGGTCCCGTTGCCTAAATGTGGAGCCTCACACTATCAACAACCTTTGGCGGTCTATTATTCCTAGAAAATGCAAATTTTTCGTTTGGTCCATCTTCCACAGAAGTATCAACACAGCCGACAAGCTTCAGAAAAAATTCAAGCACTTGATGATTAGTCCCCATTGGTGCCCTCTTTGTTGTCAAAGCTCGGAAAGCCTCGACCATATTTTTCTCCATTGTAAGGTGGCCTATTCATTTTGGGTGCTTTTATATCGTGTCTCAGCCTCTCAGGTCTTCATTTTCCTCTGCCACGCCTTCCATTGACACCTTCCTCATGGACATTTTCTATAGTCATCTTTCTTCTCAAAGGCAAGTTCTGATCCAGGCCTTCGTGGGTGCCGTTTTATGGTCTATTTGGAAAGAAAGGAATAGCCGCACTTTTTCTGATTCTTCTCGCAACGTGGCTGCTCTTAGGGAGGACATTCTCGCTCTAACCGGCTTTTGGGCTTCATCGTCTGATTTATTTTGTAATTATGAAGCCTCCTTGATTTCCCTTAACTGGGAAGTTTTTATGTAG

mRNA sequence

ATGCGTGTCGGTAGAGAGTCTTTCTGTCGAGGTGTGCTCAATACGCTTCGGTCTTCATTTTCCTCTGCCACGCCTTCCATTGACACCTTCCTCATGGACATTTTCTATAGTCATCTTTCTTCTCAAAGGCAAGTTCTGATCCAGGCCTTCGTGGGTGCCGTTTTATGGTCTATTTGGAAAGAAAGGAATAGCCGCACTTTTTCTGATTCTTCTCGCAACGTGGCTGCTCTTAGGGAGGACATTCTCGCTCTAACCGGCTTTTGGGCTTCATCGTCTGATTTATTTTGTAATTATGAAGCCTCCTTGATTTCCCTTAACTGGGAAGTTTTTATGTAG

Coding sequence (CDS)

ATGCGTGTCGGTAGAGAGTCTTTCTGTCGAGGTGTGCTCAATACGCTTCGGTCTTCATTTTCCTCTGCCACGCCTTCCATTGACACCTTCCTCATGGACATTTTCTATAGTCATCTTTCTTCTCAAAGGCAAGTTCTGATCCAGGCCTTCGTGGGTGCCGTTTTATGGTCTATTTGGAAAGAAAGGAATAGCCGCACTTTTTCTGATTCTTCTCGCAACGTGGCTGCTCTTAGGGAGGACATTCTCGCTCTAACCGGCTTTTGGGCTTCATCGTCTGATTTATTTTGTAATTATGAAGCCTCCTTGATTTCCCTTAACTGGGAAGTTTTTATGTAG

Protein sequence

MRVGRESFCRGVLNTLRSSFSSATPSIDTFLMDIFYSHLSSQRQVLIQAFVGAVLWSIWKERNSRTFSDSSRNVAALREDILALTGFWASSSDLFCNYEASLISLNWEVFM

Homology

[Close]

BLAST of Spg003507 vs. NCBI nr
Match: KAA0040037.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 5.2e-08
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 41  SQRQVLIQAFVGAVLWSIWKERNSRTFSDSSRNVAALREDILALTGFWASSSDLFCNYEA 100
           +++ V++     + LW+IW ERN+R F+   + VA + EDI AL G W S S LF NY+A
Sbjct: 474 TKKNVILYNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSRSSLFSNYQA 533

Query: 101 SLISLNWEVF 111
           S I+LN   F
Sbjct: 534 SSIALNLNAF 543

[Close]

BLAST of Spg003507 vs. NCBI nr
Match: KAA0039966.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 5.2e-08
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 41  SQRQVLIQAFVGAVLWSIWKERNSRTFSDSSRNVAALREDILALTGFWASSSDLFCNYEA 100
           +++ V++     + LW+IW ERN+R F+   + VA + EDI AL G W S S LF NY+A
Sbjct: 753 TKKNVILYNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSRSSLFTNYQA 812

Query: 101 SLISLNWEVF 111
           S I+LN   F
Sbjct: 813 SSIALNLNAF 822

[Close]

BLAST of Spg003507 vs. NCBI nr
Match: TYK24536.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 5.2e-08
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 41  SQRQVLIQAFVGAVLWSIWKERNSRTFSDSSRNVAALREDILALTGFWASSSDLFCNYEA 100
           +++ V++     + LW+IW ERN+R F+   + VA + EDI AL G W S S LF NY+A
Sbjct: 854 TKKNVILYNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSRSSLFTNYQA 913

Query: 101 SLISLNWEVF 111
           S I+LN   F
Sbjct: 914 SSIALNLNAF 923

[Close]

BLAST of Spg003507 vs. NCBI nr
Match: TYK06777.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 8.9e-08
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 41   SQRQVLIQAFVGAVLWSIWKERNSRTFSDSSRNVAALREDILALTGFWASSSDLFCNYEA 100
            +++ V++     + LW+IW ERN+R F+   + VA + EDI AL G W S S LF NY+A
Sbjct: 1050 TKKNVILFNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSRSSLFSNYQA 1109

Query: 101  SLISLNWEVF 111
            S I+LN   F
Sbjct: 1110 SSIALNLNAF 1119

[Close]

BLAST of Spg003507 vs. NCBI nr
Match: TYK14764.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 8.9e-08
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 41  SQRQVLIQAFVGAVLWSIWKERNSRTFSDSSRNVAALREDILALTGFWASSSDLFCNYEA 100
           +++ V++     + LW+IW ERN+R F+   + VA + EDI AL G W S S LF NY+A
Sbjct: 177 TKKNVILFNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSRSSLFSNYQA 236

Query: 101 SLISLNWEVF 111
           S I+LN   F
Sbjct: 237 SSIALNLNAF 246

[Close]

BLAST of Spg003507 vs. ExPASy TrEMBL
Match: A0A5D3DLM2 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00780 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.5e-08
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 41  SQRQVLIQAFVGAVLWSIWKERNSRTFSDSSRNVAALREDILALTGFWASSSDLFCNYEA 100
           +++ V++     + LW+IW ERN+R F+   + VA + EDI AL G W S S LF NY+A
Sbjct: 854 TKKNVILYNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSRSSLFTNYQA 913

Query: 101 SLISLNWEVF 111
           S I+LN   F
Sbjct: 914 SSIALNLNAF 923

[Close]

BLAST of Spg003507 vs. ExPASy TrEMBL
Match: A0A5A7TCY9 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G002480 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.5e-08
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 41  SQRQVLIQAFVGAVLWSIWKERNSRTFSDSSRNVAALREDILALTGFWASSSDLFCNYEA 100
           +++ V++     + LW+IW ERN+R F+   + VA + EDI AL G W S S LF NY+A
Sbjct: 753 TKKNVILYNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSRSSLFTNYQA 812

Query: 101 SLISLNWEVF 111
           S I+LN   F
Sbjct: 813 SSIALNLNAF 822

[Close]

BLAST of Spg003507 vs. ExPASy TrEMBL
Match: A0A5A7TES3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00040 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.5e-08
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 41  SQRQVLIQAFVGAVLWSIWKERNSRTFSDSSRNVAALREDILALTGFWASSSDLFCNYEA 100
           +++ V++     + LW+IW ERN+R F+   + VA + EDI AL G W S S LF NY+A
Sbjct: 474 TKKNVILYNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSRSSLFSNYQA 533

Query: 101 SLISLNWEVF 111
           S I+LN   F
Sbjct: 534 SSIALNLNAF 543

[Close]

BLAST of Spg003507 vs. ExPASy TrEMBL
Match: A0A5D3C4J1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00790 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.3e-08
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 41   SQRQVLIQAFVGAVLWSIWKERNSRTFSDSSRNVAALREDILALTGFWASSSDLFCNYEA 100
            +++ V++     + LW+IW ERN+R F+   + VA + EDI AL G W S S LF NY+A
Sbjct: 1050 TKKNVILFNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSRSSLFSNYQA 1109

Query: 101  SLISLNWEVF 111
            S I+LN   F
Sbjct: 1110 SSIALNLNAF 1119

[Close]

BLAST of Spg003507 vs. ExPASy TrEMBL
Match: A0A5D3CUY9 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46132G00010 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.3e-08
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 41  SQRQVLIQAFVGAVLWSIWKERNSRTFSDSSRNVAALREDILALTGFWASSSDLFCNYEA 100
           +++ V++     + LW+IW ERN+R F+   + VA + EDI AL G W S S LF NY+A
Sbjct: 177 TKKNVILFNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSRSSLFSNYQA 236

Query: 101 SLISLNWEVF 111
           S I+LN   F
Sbjct: 237 SSIALNLNAF 246

The following BLAST results are available for this feature:

BLAST of Spg003507 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040037.1	5.2e-08	44.29	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0039966.1	5.2e-08	44.29	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK24536.1	5.2e-08	44.29	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK06777.1	8.9e-08	44.29	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK14764.1	8.9e-08	44.29	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg003507 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg003507 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DLM2	2.5e-08	44.29	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TCY9	2.5e-08	44.29	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TES3	2.5e-08	44.29	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3C4J1	4.3e-08	44.29	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3CUY9	4.3e-08	44.29	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Spg003507 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg003507.1	Spg003507.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0050794	regulation of cellular process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus