Spg003270 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg003270
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCyclin-H1-1
Locationscaffold4: 44467384 .. 44469036 (-)
RNA-Seq ExpressionSpg003270
SyntenySpg003270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGAGTCGACTCTGGAACTTGGAAGGGCTGCTCTTCTCGTCCTTTTTAAAAGGAGCCGCGGCAAAGCCAAAAACCTTGGGGTTTTGGAATTCGTAGTTGCTTTCATGGCGAGCTTCGTTTCCCTGAGCTTCTCCGTTCCGCAGCCCATTCTCAAGGTAAATTCCGCTCCCAACGCTCTCTCTCCTTGATCACATTTTGTTGTTTCGTAATCTTCTTCAGTATGTTCTTCGATTCTTGTAATGTTCGACGAAACGGAGAGCTCCTTTCGTGTTTAGATTGCTGTAATTGACCTTGCTGTTTTCTTCTAGCTTGTGGAAAACGAATGCGTTTTTTTTTTTTTTTTTTGCATAATGCTTTCCGGTTGACCATTTCGGCATGGGAAACTTGGAATTGTGTGAGTTGTGTTTTGGTTGGATATTTTTGTTTAGATGCTTGGAAAGTGTTCGGTGGTTTCATGAGTTAAATTGGATTGAAATGCTTTCTTCTGAAAAGAATATCGTCGGTAAATTAAGTTTTGAAAGAGGACTCGTGAGCATGTTCTTCTAATTTTGTTGTAATGATGGATTGGTGAGCGAATTTTATATGCTTCATACATCAACTGTAATCTTTGACGTGACATCTTCGAAATTCAGTTCAAGTATTAAAATCATTGTTTGAAGCTCAGTCGTTCATCCTAAGATGACTGGAAATCGTTGAAGAAATATGAATGGTTGTTTATTTCTACTGATTTAAATGTTTTGAATGCACACTGACGTGTTTTTCCTACTTATCTTTTGAACGAAGCGTCAGGAAATGCCCCCATCGAAACTTGTCAAAGTTACAGTAGTTTCAAGCCGAGCAATTACTGGAACAGGTTTCATTCTCATTTCTTTTATGGTCAATAATTAGTGGGATCACCACCATTCAGAGGCATTTTAACCAAAAAAATTTCAAGTTATATCTTATTTTCATGTTGCTTAACTACTTATAAGGTTCCAAAACTGTATAAGGTAATGATTGAATCCTTGTGTACCATTACTCATGTGATGTAGTCCCGTACCCATCATATACTCTCATTGACTAGATTGAGAAAATTTTGGTTTGCTGATAATATTGAATTGCATTTGCAGCTTCGAAGCTTGTGCTATCCTGTTGCTCAAATAAATCCGTATCTAAGAATGGGAGAAATTGCCATCCTTTGCGGGTAACTTCAAGACCTTTTTTGGGAATAGTTTCTTTTAGTTCCGGGAGTATGGTATTAGCTGGCTATTGGGTAGGACCTGATGTTGATGACGGTTGGGGATATATAGAAGCTTTTATTGATCGGATTACTTAACAATTCAAACTTTAAATTCTATTTCATGATTTTCTTAGGCTTGATCTTTTTCAAATGATTGTATGCAATAGTCTCTTGCTTTCACCTAAAGGTCCAAAACTGCTTCCCATTTGATCGCCGAGAGGTTAATCAGAGTTCTAGATTTAGGATTCGATCCTCATTGTCATGACACGAGGATGGGACAAGCTATTAAATCTGAAGCCAGTAGGGATCAATCTCAGGCTCTGTCTTTTTATTCTTCATTTTGGCACGAGTGTTTGTCGTCTAACAATTAAAGTTACTGTGAGAGTCCTCTGCTTCCATCTTACAAAAAGGTTTCAATGGTGGAAAACAC

mRNA sequence

ATGAAGGAGTCGACTCTGGAACTTGGAAGGGCTGCTCTTCTCGTCCTTTTTAAAAGGAGCCGCGGCAAAGCCAAAAACCTTGGGGTTTTGGAATTCGTAGTTGCTTTCATGGCGAGCTTCGTTTCCCTGAGCTTCTCCGTTCCGCAGCCCATTCTCAAGCGTCAGGAAATGCCCCCATCGAAACTTGTCAAAGTTACAGTAGTTTCAAGCCGAGCAATTACTGGAACAGCTTCGAAGCTTGTGCTATCCTGTTGCTCAAATAAATCCGTATCTAAGAATGGGAGAAATTGCCATCCTTTGCGGGTAACTTCAAGACCTTTTTTGGGAATAGTTTCTTTTAGTTCCGGGAGTATGGTATTAGCTGGCTATTGGGTAGGACCTGATGTTGATGACGGTTGGGGATATATAGAAGCTTTTATTGATCGGATTACTTAA

Coding sequence (CDS)

ATGAAGGAGTCGACTCTGGAACTTGGAAGGGCTGCTCTTCTCGTCCTTTTTAAAAGGAGCCGCGGCAAAGCCAAAAACCTTGGGGTTTTGGAATTCGTAGTTGCTTTCATGGCGAGCTTCGTTTCCCTGAGCTTCTCCGTTCCGCAGCCCATTCTCAAGCGTCAGGAAATGCCCCCATCGAAACTTGTCAAAGTTACAGTAGTTTCAAGCCGAGCAATTACTGGAACAGCTTCGAAGCTTGTGCTATCCTGTTGCTCAAATAAATCCGTATCTAAGAATGGGAGAAATTGCCATCCTTTGCGGGTAACTTCAAGACCTTTTTTGGGAATAGTTTCTTTTAGTTCCGGGAGTATGGTATTAGCTGGCTATTGGGTAGGACCTGATGTTGATGACGGTTGGGGATATATAGAAGCTTTTATTGATCGGATTACTTAA

Protein sequence

MKESTLELGRAALLVLFKRSRGKAKNLGVLEFVVAFMASFVSLSFSVPQPILKRQEMPPSKLVKVTVVSSRAITGTASKLVLSCCSNKSVSKNGRNCHPLRVTSRPFLGIVSFSSGSMVLAGYWVGPDVDDGWGYIEAFIDRIT
Homology
[Close]
BLAST of Spg003270 vs. NCBI nr
Match: XP_023545344.1 (uncharacterized protein LOC111804783 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.0 bits (406), Expect = 7.7e-36
Identity = 84/108 (77.78%), Postives = 90/108 (83.33%), Query Frame = 0 

Query: 37  MASFVSLSFSVPQPILKRQEMPPSKLVKVTVVSSRAITGTASKLVLSCCSNKSVSKNGRN 96
           MASFVSLSFSVPQ I K  EMPP KL KVTVV  RA  GTAS  VLSCCSNKS+S N  N
Sbjct: 1   MASFVSLSFSVPQVIFK--EMPPWKLAKVTVVPRRA--GTASTFVLSCCSNKSISMNWEN 60

Query: 97  CHPLRVTSRPFLGIVSFSSGSMVLAGYWVGPDVDDGWGYIEAFIDRIT 145
           CHP+R+TSRPF GIVS SS ++VLAGYWVGPDVDDGWGYIEAF+DRIT
Sbjct: 61  CHPVRLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEAFVDRIT 104

[Close]
BLAST of Spg003270 vs. NCBI nr
Match: XP_038890542.1 (uncharacterized protein LOC120080060 [Benincasa hispida])

HSP 1 Score: 159.1 bits (401), Expect = 2.9e-35
Identity = 85/109 (77.98%), Postives = 94/109 (86.24%), Query Frame = 0 

Query: 37  MASFVSLSFSVPQPILKRQEMPPSKLVKVTVVSSRAITGTASKLVLSCCSNKSVSKNGRN 96
           MA+FVSLSFSVPQP LK  E+PP KL +VTVVSSRA  GTASKLVLSCCSN S+S N +N
Sbjct: 1   MATFVSLSFSVPQPTLK--EIPPRKLSEVTVVSSRA--GTASKLVLSCCSNISISMNWKN 60

Query: 97  CHPLRVTSRPFLGIVSFSSGSMV-LAGYWVGPDVDDGWGYIEAFIDRIT 145
           CHP+R+T RPF GIVS SS +MV L+GYWVGPDVDDGWGYIEAFIDRIT
Sbjct: 61  CHPVRLTPRPFWGIVSSSSRAMVLLSGYWVGPDVDDGWGYIEAFIDRIT 105

[Close]
BLAST of Spg003270 vs. NCBI nr
Match: XP_022150791.1 (uncharacterized protein LOC111018854 [Momordica charantia])

HSP 1 Score: 158.7 bits (400), Expect = 3.8e-35
Identity = 83/108 (76.85%), Postives = 92/108 (85.19%), Query Frame = 0 

Query: 37  MASFVSLSFSVPQPILKRQEMPPSKLVKVTVVSSRAITGTASKLVLSCCSNKSVSKNGRN 96
           MA+FVS+SFSVPQ +LK  EM P KL KV  VSSRAITGTASKLVLSCCSNKS+S   R+
Sbjct: 1   MAAFVSVSFSVPQAMLK--EMQPRKLDKV-AVSSRAITGTASKLVLSCCSNKSLSMKWRS 60

Query: 97  CHPLRVTSRPFLGIVSFSSGSMVLAGYWVGPDVDDGWGYIEAFIDRIT 145
            HPLRVTSRPF G+VSFSS + V+ GYW+GPDVDDGWGYIEAFIDRIT
Sbjct: 61  SHPLRVTSRPFWGVVSFSSRNRVIVGYWIGPDVDDGWGYIEAFIDRIT 105

[Close]
BLAST of Spg003270 vs. NCBI nr
Match: XP_022946526.1 (uncharacterized protein LOC111450562 [Cucurbita moschata])

HSP 1 Score: 157.9 bits (398), Expect = 6.5e-35
Identity = 84/108 (77.78%), Postives = 91/108 (84.26%), Query Frame = 0 

Query: 37  MASFVSLSFSVPQPILKRQEMPPSKLVKVTVVSSRAITGTASKLVLSCCSNKSVSKNGRN 96
           MASFVSLSFSVPQ I K  EMPP KL KVTVV  RA  GTASK VLSCC+NKS+S N  N
Sbjct: 1   MASFVSLSFSVPQVIFK--EMPPWKLAKVTVVPRRA--GTASKFVLSCCTNKSIS-NWEN 60

Query: 97  CHPLRVTSRPFLGIVSFSSGSMVLAGYWVGPDVDDGWGYIEAFIDRIT 145
           CHP+R+TSRPF GIVS SS ++VLAGYWVGPDVDDGWGYIEAF+DRIT
Sbjct: 61  CHPVRLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEAFVDRIT 103

[Close]
BLAST of Spg003270 vs. NCBI nr
Match: XP_022999037.1 (uncharacterized protein LOC111493548 [Cucurbita maxima])

HSP 1 Score: 156.8 bits (395), Expect = 1.4e-34
Identity = 83/108 (76.85%), Postives = 89/108 (82.41%), Query Frame = 0 

Query: 37  MASFVSLSFSVPQPILKRQEMPPSKLVKVTVVSSRAITGTASKLVLSCCSNKSVSKNGRN 96
           MASFVSLSFSVPQ I K  EMPP KL KVTVV  RA  GTASK VLSCCSNKS+S N  N
Sbjct: 1   MASFVSLSFSVPQVIFK--EMPPWKLAKVTVVPRRA--GTASKPVLSCCSNKSISMNWEN 60

Query: 97  CHPLRVTSRPFLGIVSFSSGSMVLAGYWVGPDVDDGWGYIEAFIDRIT 145
           C P+R+TSRPF GIVS SS ++VLAGYWVGPDVDDGWGYIEA +DRIT
Sbjct: 61  CQPVRLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEALVDRIT 104

[Close]
BLAST of Spg003270 vs. ExPASy TrEMBL
Match: A0A6J1DCK5 (uncharacterized protein LOC111018854 OS=Momordica charantia OX=3673 GN=LOC111018854 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.8e-35
Identity = 83/108 (76.85%), Postives = 92/108 (85.19%), Query Frame = 0 

Query: 37  MASFVSLSFSVPQPILKRQEMPPSKLVKVTVVSSRAITGTASKLVLSCCSNKSVSKNGRN 96
           MA+FVS+SFSVPQ +LK  EM P KL KV  VSSRAITGTASKLVLSCCSNKS+S   R+
Sbjct: 1   MAAFVSVSFSVPQAMLK--EMQPRKLDKV-AVSSRAITGTASKLVLSCCSNKSLSMKWRS 60

Query: 97  CHPLRVTSRPFLGIVSFSSGSMVLAGYWVGPDVDDGWGYIEAFIDRIT 145
            HPLRVTSRPF G+VSFSS + V+ GYW+GPDVDDGWGYIEAFIDRIT
Sbjct: 61  SHPLRVTSRPFWGVVSFSSRNRVIVGYWIGPDVDDGWGYIEAFIDRIT 105

[Close]
BLAST of Spg003270 vs. ExPASy TrEMBL
Match: A0A6J1G3X3 (uncharacterized protein LOC111450562 OS=Cucurbita moschata OX=3662 GN=LOC111450562 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 3.1e-35
Identity = 84/108 (77.78%), Postives = 91/108 (84.26%), Query Frame = 0 

Query: 37  MASFVSLSFSVPQPILKRQEMPPSKLVKVTVVSSRAITGTASKLVLSCCSNKSVSKNGRN 96
           MASFVSLSFSVPQ I K  EMPP KL KVTVV  RA  GTASK VLSCC+NKS+S N  N
Sbjct: 1   MASFVSLSFSVPQVIFK--EMPPWKLAKVTVVPRRA--GTASKFVLSCCTNKSIS-NWEN 60

Query: 97  CHPLRVTSRPFLGIVSFSSGSMVLAGYWVGPDVDDGWGYIEAFIDRIT 145
           CHP+R+TSRPF GIVS SS ++VLAGYWVGPDVDDGWGYIEAF+DRIT
Sbjct: 61  CHPVRLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEAFVDRIT 103

[Close]
BLAST of Spg003270 vs. ExPASy TrEMBL
Match: A0A6J1K9Q0 (uncharacterized protein LOC111493548 OS=Cucurbita maxima OX=3661 GN=LOC111493548 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 7.0e-35
Identity = 83/108 (76.85%), Postives = 89/108 (82.41%), Query Frame = 0 

Query: 37  MASFVSLSFSVPQPILKRQEMPPSKLVKVTVVSSRAITGTASKLVLSCCSNKSVSKNGRN 96
           MASFVSLSFSVPQ I K  EMPP KL KVTVV  RA  GTASK VLSCCSNKS+S N  N
Sbjct: 1   MASFVSLSFSVPQVIFK--EMPPWKLAKVTVVPRRA--GTASKPVLSCCSNKSISMNWEN 60

Query: 97  CHPLRVTSRPFLGIVSFSSGSMVLAGYWVGPDVDDGWGYIEAFIDRIT 145
           C P+R+TSRPF GIVS SS ++VLAGYWVGPDVDDGWGYIEA +DRIT
Sbjct: 61  CQPVRLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEALVDRIT 104

[Close]
BLAST of Spg003270 vs. ExPASy TrEMBL
Match: A0A5A7U1B8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00850 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.2e-29
Identity = 80/109 (73.39%), Postives = 85/109 (77.98%), Query Frame = 0 

Query: 37  MASFVSLSFSVPQPILKRQEMPPSKLVKVTVVSSRAITGTASKLVLSCCSNKSVSKNGRN 96
           MASFVSLSFSVPQ  LK  E+PP KL K TVVS RA  GTASKLVL C S KS+S N  N
Sbjct: 1   MASFVSLSFSVPQLTLK--EIPPWKLAKATVVSRRA--GTASKLVLPCYSKKSISMNWEN 60

Query: 97  CHPLRVTSRPFLGIVSFSSGSMV-LAGYWVGPDVDDGWGYIEAFIDRIT 145
              +R+TSRPF GIVS SS +MV L GYWVGPDVDDGWGYIEAFIDRIT
Sbjct: 61  FRSVRLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 105

[Close]
BLAST of Spg003270 vs. ExPASy TrEMBL
Match: A0A5D3CPK7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00650 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 5.7e-29
Identity = 79/109 (72.48%), Postives = 84/109 (77.06%), Query Frame = 0 

Query: 37  MASFVSLSFSVPQPILKRQEMPPSKLVKVTVVSSRAITGTASKLVLSCCSNKSVSKNGRN 96
           MASFVSLSFSVPQ  LK  E+PP KL K TVVS RA  GTA KLVL C S KS+S N  N
Sbjct: 1   MASFVSLSFSVPQLTLK--EIPPWKLAKATVVSRRA--GTALKLVLPCYSKKSISMNWEN 60

Query: 97  CHPLRVTSRPFLGIVSFSSGSMV-LAGYWVGPDVDDGWGYIEAFIDRIT 145
              +R+TSRPF GIVS SS +MV L GYWVGPDVDDGWGYIEAFIDRIT
Sbjct: 61  FRSVRLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 105

The following BLAST results are available for this feature:
BLAST of Spg003270 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023545344.17.7e-3677.78uncharacterized protein LOC111804783 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_038890542.12.9e-3577.98uncharacterized protein LOC120080060 [Benincasa hispida][more]
XP_022150791.13.8e-3576.85uncharacterized protein LOC111018854 [Momordica charantia][more]
XP_022946526.16.5e-3577.78uncharacterized protein LOC111450562 [Cucurbita moschata][more]
XP_022999037.11.4e-3476.85uncharacterized protein LOC111493548 [Cucurbita maxima][more]
BLAST of Spg003270 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg003270 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DCK51.8e-3576.85uncharacterized protein LOC111018854 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A6J1G3X33.1e-3577.78uncharacterized protein LOC111450562 OS=Cucurbita moschata OX=3662 GN=LOC1114505... [more]
A0A6J1K9Q07.0e-3576.85uncharacterized protein LOC111493548 OS=Cucurbita maxima OX=3661 GN=LOC111493548... [more]
A0A5A7U1B81.2e-2973.39Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CPK75.7e-2972.48Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Spg003270 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg003270.1Spg003270.1mRNA