Spg003181 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg003181
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSerine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform X2
Locationscaffold4: 29701244 .. 29704500 (-)
RNA-Seq ExpressionSpg003181
SyntenySpg003181
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTGTTGGGAATTTCTTACTACATTCCTAAGAAAGTGAACGGTTGGCTTATGGAAGGATTAAATGCGTGGAGTTTGAAAGGGAAAGCTAAGGTGATTGGGAGCTATGCCTGAGAGCTCTTTTGTGGTACTTGTGGAAGGAAATGAATGCTAGAGTTTTTGAAGATAAGTCCTTATGTTTTAATTCTTTTTATAACGTTGTACAAAATACATCGTCTTGGTAGATTTCTTTGCACACAAAATTCTTTTATAATTATAGCCTCTTGATGATAATCAATGATTGGAAGGCTCTTACGATGTAGTTGGGGGGGGGGGGGGGGGACCTCAACCCCAACCCTTAGGTTGTTCTGGTTGTTTTTGTGGAATATATTCCTCCTTTCGTTTCTTATTAAAAAAAATCTGGCTCTGTTGCTGCTGCTTTTGCTTGATATTTTTGAGGGTTGCGGTTGTTCCATGTCCACCTTTGTTTTCAGTCTTTGGTTGGAGATTTTTTAGCAGCGCACTCTCAAGAAAGTTATTAGCTTTTGTCTTTATTGTTGCCCTTTGAAGTTTCTCTCTTTGTGCTATTTTTGGTGTAGCATTTGTAGTTTGGTTTGGTGTTTTTGGGCCCTTTTTAGTTGTTATTTTTCAGGCTCTTGTATTTTTGGTGTTTTGTTTTTTGGGTGTTTTATTCTCTCTCCCTCTGTGAGGTTGTATCCTTGAACACTTTTCTTCCTTTTCATCATCTATCAATGAATTCTTTTTTTCTTGTTAAAAAAAGAAGATTGCCTTGACCTTACCATCCCAAGGGATGGACATCCCCACCCATCGGCTTGCTAAGTGGGGGTCTAGAGCTGGGCAATTTGAGAATTCGTAACAGAGCCTTGCTTGCTAAGTGGCTTTGGCGTTTTCGCCTCGAACCCAATTCTCTTTAGGTTAGGATTATTGTGAGTAAATATGGGCAGCATCCCTTCATGTGGTTGTTTGATGGGGTCAAAGGCACCTTCAAGAATCCTTGGAAAGACATATCTTTGGAGCTTCCCTCTTTCTCTTAGTCCAGTGCATAGTGGGTGGTGGGAGATGCATTTTTTTCTGGGAGGATTTTTGGGTGGGGGGTCGTTCCCTCTACTCCTTGTTCCCGCGTCTATATCATTTATCATCGATGAAAAATCGCATTGTGGCTGATGTCCTTGGATCCGTGGGGAGTTCCACCTCCTTTTCCTTTGGTTTTCTTCGTCCGTTATTTGATAGAGAAACCACAAACATCATGACCCTCTTATCTCTGCTTGAGAGGGTTAGCCTTAGACCGGATAGGAGGGATGTTCACTTCTAGAGTCTCGATCCCTATGGGGGCTTTTCTTGCAGGCTTTTCTTTCATTTTTTGGTCAATCCCCCATGGTTAGAGAGTTTTTTTTTTTTTTTTGTGTTTGTGGAAGGTTAAAGCTCCAAAGAAAGTTTTGTTCTTCGTTTGGCAGGTCATCTTGGGTCGTGTTAACACTGTTGATAGGCTTTCGAGAGTGAAGGCCCCTGTGGTTGGCCCTTTCAGTTGCATTCTATGTTGGAAGGCGGAGGAGGATCTTGATGTGGGGTTGTGAGTTTACTCTCTCAATCTAGAGCCTCTTCTTTGAGGTTTTTGAGTTTCAGATTGTGGCCAGTGTTGTTGTAGGGAGATGATCGAGGAGTTCCTCCTCCATCTGCCGTTTCGGGAGAAGGGAAGGTTCTTTTGGTATGCTAACATTTGTGCTATTTTGTGGAGTTTATGAGGGGAAAGAAACAATAGAATTTTTAGAGGGACTGAGAGACATTCTTGTGAGGTTTGGGCTAATATTAGGTTTCATGTTTCTTTATGGGCCTCGGTTGCCAAGACTTTTTGTAATTACCTGCTAGGTCTTATTTTGATTGATTGGAAACCTTTCCTTTTGCTGGATTCCTTTTTTTGGATGCCCTTGTATTCTTTCATTTTTTCTCAATGAAAGCTCGGTTCTTTATAAAAAAAAAAAAAAATCCCCACCCACCGGCTTTACAAAGCCTTGCTAATTGGTTAAATCTATGGATGCATGGCTACATCTTGATCCCTTAAGAAGAAGGGCAGAACAAACAAACGCACAAATAAAGGTTGAGGTTTTGACCAAAAATGGGGATTGAGTTGTGCTTGTATCTCTAGTACAAATTTCTCCATTATTATCATGGGCAAACCTCAAGGAAAGAGTCAAGCTACGTAGGAGAGGCATACGATGAGGAGACCCTATTTCTCTGTACCTTTTCATTATTGTGGTAGATTGCCACAGTAGGCTTCACAAAGCTCATTTTGTGGCCTTATCAAAAGCTTAAACATGGGATGTAGCTTTTTGTTCATCATTCTACCTTCCATGAGGGTTGCATTTGAAATCTCTTTATTAATATTATCAGAATCTTTGAGGAAACATGAAGTATTGATATAAATTACAATAAGACTAAGATTAGGGGGATTGATGTTGATAAAGTTCGCACATTGAAGCTCTTGCTTCTTTCTTTTGATTGCAAAATTGGCTCTTGGGCCCAACTCATATTTGGGGCTCCTTCATAATGGCAAAACATGTATTTTTTTTCCTTTAAGATGGGAGTCCTTTCTTGTAATTAGGGTTGAGCTCCTTTTGGTGGGCTAGTTTTTTTTGTATGCCCTTGTATATTATTTCATATTTCTTAGTGAAAGCTCAATTTCTTAAATTAAAAAAAAAATATCAAGCACATAGAAAACAAGCTTCAAAGGTGAAGGAACTCATCCTCCTCGATCATGGTGTTCTCTTTCGAATTTTATTGTTGGATTTTCTTTGCAGGATATTTACCTGAATTGGGTTGCTTTTATTTTCTCTTTGTAGTTTTTCTTTATTTGTTTTTGTTTCTCAATTCTCCCCCTCGTGGAGTTTGTATCTTTTGAGCATTAGTCTTTTTTCATTTCCTCAATGAAAAAATTCATTTCTTGTTTAGAAAAAAAAAAGAAAAATGGAGGAACTCATGTATCTTCAAAAGTGGCTTGTCTTACTATTATTCAAGTTAGTCTATTCAGGAGGATTTCTGATTTTGTGGGATTAGAGCAATCTGAAAATTGTGGAATTTCTTCAAGATTTCTGATTTCCATGGAATGGGATGTGATGTTTGATAAATCTAGAGTCTCCAAACAGTTTTCTTGTGAGAGAGATCAATTTAATGAGGTGTTGGGCTCTCCAAAAGGTGCTTCATTGCATGAAAAGGCCCTCATGAAGTCCAGCCGTTCAGGCCAAGTGGAGATAGTTTAG

mRNA sequence

ATGGGTTTGTTGGGAATTTCTTACTACATTCCTAAGAAAGTGAACGGTTGGCTTATGGAAGGATTAAATGCGTGGAGTTTGAAAGGGAAAGCTAAGGTCATCTTGGGTCGTGTTAACACTGTTGATAGGCTTTCGAGAGTGAAGGCCCCTGTGGTTGGCCCTTTCAGTTGCATTCTATGTTGGAAGGCGGAGGAGGATCTTGATGGAGATGATCGAGGAGTTCCTCCTCCATCTGCCGTTTCGGGAGAAGGGAAGGTTCTTTTGATTGCCACAGTAGGCTTCACAAAGCTCATTTTGTGGCCTTATCAAAAGCTTAAACATGGGATGAGGATTTCTGATTTTGTGGGATTAGAGCAATCTGAAAATTGTGGAATTTCTTCAAGATTTCTGATTTCCATGGAATGGGATGTGATGTTTGATAAATCTAGAGTCTCCAAACAGTTTTCTTGTGAGAGAGATCAATTTAATGAGGTGTTGGGCTCTCCAAAAGGTGCTTCATTGCATGAAAAGGCCCTCATGAAGTCCAGCCGTTCAGGCCAAGTGGAGATAGTTTAG

Coding sequence (CDS)

ATGGGTTTGTTGGGAATTTCTTACTACATTCCTAAGAAAGTGAACGGTTGGCTTATGGAAGGATTAAATGCGTGGAGTTTGAAAGGGAAAGCTAAGGTCATCTTGGGTCGTGTTAACACTGTTGATAGGCTTTCGAGAGTGAAGGCCCCTGTGGTTGGCCCTTTCAGTTGCATTCTATGTTGGAAGGCGGAGGAGGATCTTGATGGAGATGATCGAGGAGTTCCTCCTCCATCTGCCGTTTCGGGAGAAGGGAAGGTTCTTTTGATTGCCACAGTAGGCTTCACAAAGCTCATTTTGTGGCCTTATCAAAAGCTTAAACATGGGATGAGGATTTCTGATTTTGTGGGATTAGAGCAATCTGAAAATTGTGGAATTTCTTCAAGATTTCTGATTTCCATGGAATGGGATGTGATGTTTGATAAATCTAGAGTCTCCAAACAGTTTTCTTGTGAGAGAGATCAATTTAATGAGGTGTTGGGCTCTCCAAAAGGTGCTTCATTGCATGAAAAGGCCCTCATGAAGTCCAGCCGTTCAGGCCAAGTGGAGATAGTTTAG

Protein sequence

MGLLGISYYIPKKVNGWLMEGLNAWSLKGKAKVILGRVNTVDRLSRVKAPVVGPFSCILCWKAEEDLDGDDRGVPPPSAVSGEGKVLLIATVGFTKLILWPYQKLKHGMRISDFVGLEQSENCGISSRFLISMEWDVMFDKSRVSKQFSCERDQFNEVLGSPKGASLHEKALMKSSRSGQVEIV
Homology
[Close]
BLAST of Spg003181 vs. NCBI nr
Match: TYK04295.1 (serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-04
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 32 KVILGRVNTVDRLSRVKAPVVGPFSCILCWKAEEDLD 69
          +V+LGRVNTVDRL R +   VGPF C+LC KAEEDLD
Sbjct: 19 QVLLGRVNTVDRLVRKRTLFVGPFCCMLCQKAEEDLD 55

[Close]
BLAST of Spg003181 vs. NCBI nr
Match: KAA0067918.1 (hypothetical protein E6C27_scaffold138G00850 [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-04
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 32  KVILGRVNTVDRLSRVKAPVVGPFSCILCWKAEEDLD 69
           +V+LGRVNTVDRL R +   VGPF C+LC KAEEDLD
Sbjct: 119 QVLLGRVNTVDRLVRKRTLFVGPFCCMLCQKAEEDLD 155

[Close]
BLAST of Spg003181 vs. ExPASy TrEMBL
Match: A0A5D3BYR2 (Serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G00230 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.4e-05
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 32 KVILGRVNTVDRLSRVKAPVVGPFSCILCWKAEEDLD 69
          +V+LGRVNTVDRL R +   VGPF C+LC KAEEDLD
Sbjct: 19 QVLLGRVNTVDRLVRKRTLFVGPFCCMLCQKAEEDLD 55

[Close]
BLAST of Spg003181 vs. ExPASy TrEMBL
Match: A0A5A7VJE4 (zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G00850 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.4e-05
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 32  KVILGRVNTVDRLSRVKAPVVGPFSCILCWKAEEDLD 69
           +V+LGRVNTVDRL R +   VGPF C+LC KAEEDLD
Sbjct: 119 QVLLGRVNTVDRLVRKRTLFVGPFCCMLCQKAEEDLD 155

[Close]
BLAST of Spg003181 vs. ExPASy TrEMBL
Match: A0A5A7T6T0 (Suppressor of mec-8 and unc-52 protein-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G001820 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.2e-04
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 32  KVILGRVNTVDRLSRVKAPVVGPFSCILCWKAEEDLD 69
           +V+LG+VNTVDRL R + P+VGPF C+LC K EEDLD
Sbjct: 317 QVLLGQVNTVDRLVR-RTPLVGPFYCMLCRKVEEDLD 352

The following BLAST results are available for this feature:
BLAST of Spg003181 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK04295.11.5e-0470.27serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform X2 [Cuc... [more]
KAA0067918.11.5e-0470.27hypothetical protein E6C27_scaffold138G00850 [Cucumis melo var. makuwa][more]
BLAST of Spg003181 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg003181 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BYR27.4e-0570.27Serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform X2 OS=C... [more]
A0A5A7VJE47.4e-0570.27zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
A0A5A7T6T06.2e-0467.57Suppressor of mec-8 and unc-52 protein-like protein 1 OS=Cucumis melo var. makuw... [more]
BLAST of Spg003181 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg003181.1Spg003181.1mRNA