Spg002867 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg002867
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSerine hydroxymethyltransferase
Locationscaffold6: 5420008 .. 5422581 (-)
RNA-Seq ExpressionSpg002867
SyntenySpg002867
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAATCAACCCAGAAAGCCAAGAGGATTTGGAAAAGTTTCTCCAATTGGCAATGACAAGTAATGACTGCAGTTAAAAAAAGAAGTCTGTTAAAAGAACTCCAAGAAGAAGCCTTGTATTCAATGAAGATGAACTCCCAAACTTCTTCTCTTCTAGCGAAGTTGTGAAACAATCTATGATTTCATTCTAGTTGAACTTCCACGGGTGCAGATTCTTTGCTTTGTATTTAAAGGGATGCCACACAGGCAAACAGTCCAGACTTTGCAGAAAATAAAAAGGTAAGCATTAAGGAAAATTAAACTTATTTAGAAGAGTTCCTCAAAGATTTTGTAGAAGGAGCAGTGTAAGGAGCAAAATATCTGTATTTCGGCTTTTGAACCATCTTTGTCAGAAGCAACAACAGCTAGAAGAGATTAGACTGAGGATTTCTTCTTTGTATAATATTAGACGTATTGATCCCCTTATAACTGGGTTTTATAAAATATCTTGTCTTTTTAGGGTTTCCTTTCTGCCAAACAGCTCCAGAAGCCTCTGAGATGGTGCATCTCTTTGTGTTTGTGAGTTAGACGAAGAGGGGCAAAGTTGCCCCTATCTTCCTACTGAAAAACAATGGATTTGATTTTCAGTTTGGTGTTAGTTCATGATCCGTCTCTAGGACTGCATCTTTTATAGATATGGGTTGCATAGTCTATCGAGCAAGATTTGGTTTGTAGTGAAATAAATTTATTATATAGTTATTAGTTCTGCACTTCTGCTTGCATCAAGTTGTCTTTCAAAGGTGGTCTCCCCTACGTCCTGTTGTATTGAGCTGATACTGGATCATAAGTTTATTTTTGAAGTTTTGATATAGCTTTTCTCCAAATGAACTCTGTAAGATTTTTCAACTGGATACAGGACATTGATTCATTGATAAAAAGAATCCTACTAGTACACTGTATAGTGGACTGCAAGAAGATCCCTTTCTCTGGCTTCTTTGTTTATATTATACAATGTAAAAAAATGAAGATAGTTTCAGAATGGTTCCATTACAACTCACAACTTGTTTTTTGTATTCCATATTTGTATATATCTGTTTCTTCTTTTCTTTTGATAAGAAATGATATGATATTAAACCACCATGGGTTAGCCTCGTAGTAAAAAAGGGTCATCTAAATAGTAAAAGGCTTAGAGGGAATAGAGTTCAAGCCATGGTGGACACGTACCTAGGATTTAAGAGAAAATTACATGTATTCTTCTAAGTTCTAGTTTTGATGGTACCTGTGGCTGCTTAATCTATTATTCTCCATTTATAATATATTGTGTAATCTTTCTGATGGCATGGTAATTTTAGGTAAAAACTATGAGAAGGTTTGTGAGATATGCCACATTACTCTCAACAAAATTACAATATTTGGTGATAATGGAATTATTATTCCTGGTGGAGTACGGATTGGTGAGTAATACCCTCTTATATTTCATATTTTGGGGGTATCCTAAGATTGGAGAGCTCGGTATGCGTTGATTATGCGTTATAAGTTAGCTGTCTGTTATTCCTGCAGGCACCCCAGCTATGACATCAAGAGGCTGTCTGGAATCTGATTTTGAGACAATTGCTGACTTCCTTCATACAGCTGCTCAGATTGCAATTTCAGTACAGCGAGAGCATGGGAAGCTACCAAAGTCTTATCTCAAGGGCCTTCAAAGTAATAATGAAGTTGTTGAGCTCAGAAACCGTGTTGAAAGTTTCTCAGCTCAATTTGCAATGCCAGGCTTCGAAACTTGAATGGTGTTGCAATTGCATTTTGAAATGGAAAGACCATCCGTAGCCCTAAAAAAAATCATATTTGCTACTCATCATGCCTTCCATATTTACAATCTACGAAGCTTCTCTCTCTCTTGGGGTTGCTGTCTTCAAAAGTCTTTGGTTGCTGTTTATTCAGTTGCCAGCATCTTATCATCTTATAGTTGGGAGGGCCCTTGCGATCATCAGAAGAGCATTTGGTATTACCGAGCTTTTCTTCTTTAAGGCAGAAGGTATACAATGGATAGAGGCGTCATGGGCAGTTTTTTGGTGGTGTCATTTTTGGGATAAAATCAATCAAAGAAATTGGTTGTTACGGGGGATTAATTAATACTCTAGTACTCTAAATTATCAGAGATCTGGAAGAATGTTTTGGATCTGATTGTTTATGGCCGCGGCTCGGGAATCATTTTGCCAGCTTGATGTGTGATGATGTGGTATGAAGTAGTCACAATGCTGGTCAATTTCCTTTGATCAGTTTCCATTGTGTAAGTTCTTGCTGCATTTTCTTCATCATAAATTATGTCAAGTTCGTTCATTATAATGTTATATAAGTGTCTATTCATCAACATAGTTCATTTGTTCGAAGTTTTAGTCAATTTATTTGTCCGTGATTGTTAATAGAAAATGCAGCTATTTTTCTTGCACCTTTACGTTTTCTTTTTCATCATTATTGCCTTGTAATAAATGTTTGATAGCATGATCATCTTTTCAACACTGCAGAAGCTGATGCAGTTGTGATAGATAAATTGATAAGATGAGATATTTTCACTTGAGTTGTTTCATTAGTG

mRNA sequence

ATGAGAAATCAACCCAGAAAGCCAAGAGGATTTGGAAAAGTTTCTCCAATTGGCAATGACAAGGATGCCACACAGGCAAACAGTCCAGACTTTGCAGAAAATAAAAAGAAGCAACAACAGCTAGAAGAGATTAGACTGAGGATTTCTTCTTTGTATAATATTAGACGTAAAAACTATGAGAAGGTTTGTGAGATATGCCACATTACTCTCAACAAAATTACAATATTTGGTGATAATGGAATTATTATTCCTGGTGGAGTACGGATTGGCACCCCAGCTATGACATCAAGAGGCTGTCTGGAATCTGATTTTGAGACAATTGCTGACTTCCTTCATACAGCTGCTCAGATTGCAATTTCAGTACAGCGAGAGCATGGGAAGCTACCAAAGTCTTATCTCAAGGGCCTTCAAAGTAATAATGAAGTTGTTGAGCTCAGAAACCGTGTTGAAAGTTTCTCAGCTCAATTTGCAATGCCAGGCTTCGAAACTTGA

Coding sequence (CDS)

ATGAGAAATCAACCCAGAAAGCCAAGAGGATTTGGAAAAGTTTCTCCAATTGGCAATGACAAGGATGCCACACAGGCAAACAGTCCAGACTTTGCAGAAAATAAAAAGAAGCAACAACAGCTAGAAGAGATTAGACTGAGGATTTCTTCTTTGTATAATATTAGACGTAAAAACTATGAGAAGGTTTGTGAGATATGCCACATTACTCTCAACAAAATTACAATATTTGGTGATAATGGAATTATTATTCCTGGTGGAGTACGGATTGGCACCCCAGCTATGACATCAAGAGGCTGTCTGGAATCTGATTTTGAGACAATTGCTGACTTCCTTCATACAGCTGCTCAGATTGCAATTTCAGTACAGCGAGAGCATGGGAAGCTACCAAAGTCTTATCTCAAGGGCCTTCAAAGTAATAATGAAGTTGTTGAGCTCAGAAACCGTGTTGAAAGTTTCTCAGCTCAATTTGCAATGCCAGGCTTCGAAACTTGA

Protein sequence

MRNQPRKPRGFGKVSPIGNDKDATQANSPDFAENKKKQQQLEEIRLRISSLYNIRRKNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQFAMPGFET
Homology
[Close]
BLAST of Spg002867 vs. NCBI nr
Match: XP_022149204.1 (serine hydroxymethyltransferase 7-like [Momordica charantia] >XP_022149205.1 serine hydroxymethyltransferase 7-like [Momordica charantia] >XP_022149207.1 serine hydroxymethyltransferase 7-like [Momordica charantia])

HSP 1 Score: 210.3 bits (534), Expect = 1.2e-50
Identity = 101/106 (95.28%), Postives = 104/106 (98.11%), Query Frame = 0 

Query: 57  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQ 116
           KNYEKVCEIC ITLNKITI+GDNGIIIPGGVRIGTPAMTSRGCLESDFETI DFLHTAAQ
Sbjct: 482 KNYEKVCEICQITLNKITIYGDNGIIIPGGVRIGTPAMTSRGCLESDFETIVDFLHTAAQ 541

Query: 117 IAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQFAMPGFE 163
           IAISVQREHGKLPK+YLKGLQ+NNEVVELRNRVESFSAQFAMPGFE
Sbjct: 542 IAISVQREHGKLPKAYLKGLQNNNEVVELRNRVESFSAQFAMPGFE 587

[Close]
BLAST of Spg002867 vs. NCBI nr
Match: XP_022979958.1 (serine hydroxymethyltransferase 7-like [Cucurbita maxima])

HSP 1 Score: 209.9 bits (533), Expect = 1.6e-50
Identity = 101/106 (95.28%), Postives = 104/106 (98.11%), Query Frame = 0 

Query: 57  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQ 116
           KNYE VCEICHITLNKITIFGDNGIIIPGGVR+GTPAMTSRGCLESDFETIADFLHTAAQ
Sbjct: 482 KNYENVCEICHITLNKITIFGDNGIIIPGGVRVGTPAMTSRGCLESDFETIADFLHTAAQ 541

Query: 117 IAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQFAMPGFE 163
           IAISVQRE+GKLPK+YLKGL SNNEVVELRNRVESFSAQFAMPGFE
Sbjct: 542 IAISVQREYGKLPKTYLKGLLSNNEVVELRNRVESFSAQFAMPGFE 587

[Close]
BLAST of Spg002867 vs. NCBI nr
Match: XP_023547556.1 (serine hydroxymethyltransferase 7-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 209.9 bits (533), Expect = 1.6e-50
Identity = 101/106 (95.28%), Postives = 104/106 (98.11%), Query Frame = 0 

Query: 57  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQ 116
           KNYE VCEICHITLNKITIFGDNGIIIPGGVR+GTPAMTSRGCLESDFETIADFLHTAAQ
Sbjct: 482 KNYENVCEICHITLNKITIFGDNGIIIPGGVRVGTPAMTSRGCLESDFETIADFLHTAAQ 541

Query: 117 IAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQFAMPGFE 163
           IAISVQRE+GKLPK+YLKGL SNNEVVELRNRVESFSAQFAMPGFE
Sbjct: 542 IAISVQREYGKLPKTYLKGLLSNNEVVELRNRVESFSAQFAMPGFE 587

[Close]
BLAST of Spg002867 vs. NCBI nr
Match: XP_022941930.1 (serine hydroxymethyltransferase 7-like [Cucurbita moschata] >KAG6600365.1 Serine hydroxymethyltransferase 6, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031023.1 Serine hydroxymethyltransferase 6 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 209.9 bits (533), Expect = 1.6e-50
Identity = 101/106 (95.28%), Postives = 104/106 (98.11%), Query Frame = 0 

Query: 57  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQ 116
           KNYE VCEICHITLNKITIFGDNGIIIPGGVR+GTPAMTSRGCLESDFETIADFLHTAAQ
Sbjct: 482 KNYENVCEICHITLNKITIFGDNGIIIPGGVRVGTPAMTSRGCLESDFETIADFLHTAAQ 541

Query: 117 IAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQFAMPGFE 163
           IAISVQRE+GKLPK+YLKGL SNNEVVELRNRVESFSAQFAMPGFE
Sbjct: 542 IAISVQREYGKLPKTYLKGLLSNNEVVELRNRVESFSAQFAMPGFE 587

[Close]
BLAST of Spg002867 vs. NCBI nr
Match: KAG6576983.1 (Serine hydroxymethyltransferase 7, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015003.1 Serine hydroxymethyltransferase 7 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.7 bits (478), Expect = 3.9e-44
Identity = 90/107 (84.11%), Postives = 98/107 (91.59%), Query Frame = 0 

Query: 57  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQ 116
           KN+E+VCE+CHITLNKITIFGDNGII PGGVRIGTPAMTSRGCLESDFE I +FLH AAQ
Sbjct: 482 KNFEQVCEMCHITLNKITIFGDNGIITPGGVRIGTPAMTSRGCLESDFEVIVEFLHIAAQ 541

Query: 117 IAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQFAMPGFET 164
           IAI VQREHGKLPK++L+GLQSNNEVVEL  RV SFSA+FAMPG ET
Sbjct: 542 IAIVVQREHGKLPKAFLRGLQSNNEVVELGYRVASFSAKFAMPGLET 588

[Close]
BLAST of Spg002867 vs. ExPASy Swiss-Prot
Match: Q9LM59 (Serine hydroxymethyltransferase 6 OS=Arabidopsis thaliana OX=3702 GN=SHM6 PE=2 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.1e-36
Identity = 70/106 (66.04%), Postives = 87/106 (82.08%), Query Frame = 0 

Query: 57  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQ 116
           K YEKVCE+CHIT+NK+ IF +NG+I PGGVRIG+PAMTSRGCLE +FET+ADFL+ AAQ
Sbjct: 493 KVYEKVCEMCHITVNKVAIFSENGVISPGGVRIGSPAMTSRGCLEPEFETMADFLYRAAQ 552

Query: 117 IAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQFAMPGFE 163
           IA + QREHGKL K  LK +    E+ +LRN+VE+F+ QFAMP F+
Sbjct: 553 IASAAQREHGKLQKEPLKSIYHCKEIADLRNQVEAFATQFAMPAFD 598

[Close]
BLAST of Spg002867 vs. ExPASy Swiss-Prot
Match: Q84WV0 (Serine hydroxymethyltransferase 7 OS=Arabidopsis thaliana OX=3702 GN=SHM7 PE=2 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.8e-36
Identity = 71/103 (68.93%), Postives = 85/103 (82.52%), Query Frame = 0 

Query: 57  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQ 116
           K YEKVCE+CHITLNK  IFGDNG I PGGVRIGTPAMT+RGC+ESDFET+ADFL  AAQ
Sbjct: 489 KVYEKVCEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTTRGCIESDFETMADFLIKAAQ 548

Query: 117 IAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQFAMP 160
           I  ++QREHGK  K ++K L +N ++ ELRNRVE+F+ Q+ MP
Sbjct: 549 ITSALQREHGKSHKEFVKSLCTNKDIAELRNRVEAFALQYEMP 591

[Close]
BLAST of Spg002867 vs. ExPASy Swiss-Prot
Match: Q9SVM4 (Serine hydroxymethyltransferase 5 OS=Arabidopsis thaliana OX=3702 GN=SHM5 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.8e-28
Identity = 56/102 (54.90%), Postives = 74/102 (72.55%), Query Frame = 0 

Query: 60  EKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAI 119
           EKVCE+C+ITLN+  +FGD   + PGGVRIGTPAMTSRG +E DFE I +FLH A  I +
Sbjct: 361 EKVCELCYITLNRNAVFGDTSFLAPGGVRIGTPAMTSRGLVEKDFEKIGEFLHRAVTITL 420

Query: 120 SVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQFAMPGF 162
            +Q ++GK+ K + KGL +N E+ E++  VE F+  F MPGF
Sbjct: 421 DIQEQYGKVMKDFNKGLVNNKEIDEIKADVEEFTYDFDMPGF 462

[Close]
BLAST of Spg002867 vs. ExPASy Swiss-Prot
Match: O23254 (Serine hydroxymethyltransferase 4 OS=Arabidopsis thaliana OX=3702 GN=SHM4 PE=1 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.8e-26
Identity = 53/102 (51.96%), Postives = 73/102 (71.57%), Query Frame = 0 

Query: 60  EKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAI 119
           EK+C++C ITLNK  +FGD+  + PGGVRIG PAMTSRG +E DFE I +FL  A  + +
Sbjct: 361 EKLCDLCSITLNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEQIGEFLSRAVTLTL 420

Query: 120 SVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQFAMPGF 162
            +Q+ +GKL K + KGL +N ++ +L+  VE FSA + MPGF
Sbjct: 421 DIQKTYGKLLKDFNKGLVNNKDLDQLKADVEKFSASYEMPGF 462

[Close]
BLAST of Spg002867 vs. ExPASy Swiss-Prot
Match: Q54EW1 (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum OX=44689 GN=shmt2 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.2e-21
Identity = 56/157 (35.67%), Postives = 83/157 (52.87%), Query Frame = 0 

Query: 25  QANSPDFAENKKK-----QQQLEEIRLRISSLYNIRRKNY----------------EKVC 84
           +A+SPDF E  K+     Q   EE++ R  SL      N+                EK C
Sbjct: 323 EASSPDFQEYTKQVRRNSQTMGEELKKRGYSLVTEGTDNHLVLWDLRPQGITGSKIEKAC 382

Query: 85  EICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAISVQR 144
           +  HIT+NK  ++GD   I PGGVR+G PA+TSRG  E DF  + DFL    +I++ +Q 
Sbjct: 383 DEAHITVNKNAVYGDTNAIAPGGVRLGAPALTSRGLKEQDFVKVVDFLDRVVKISLDIQS 442

Query: 145 EHGKLPKSYLKGLQSNNEVVELRNRVESFSAQFAMPG 161
           + GK    + + +  N ++ ++R  V+ FS +F MPG
Sbjct: 443 KVGKKMPDFQRAIADNQDLKQIRQEVKEFSTKFGMPG 479

[Close]
BLAST of Spg002867 vs. ExPASy TrEMBL
Match: A0A6J1D7A8 (Serine hydroxymethyltransferase OS=Momordica charantia OX=3673 GN=LOC111017683 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 6.0e-51
Identity = 101/106 (95.28%), Postives = 104/106 (98.11%), Query Frame = 0 

Query: 57  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQ 116
           KNYEKVCEIC ITLNKITI+GDNGIIIPGGVRIGTPAMTSRGCLESDFETI DFLHTAAQ
Sbjct: 482 KNYEKVCEICQITLNKITIYGDNGIIIPGGVRIGTPAMTSRGCLESDFETIVDFLHTAAQ 541

Query: 117 IAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQFAMPGFE 163
           IAISVQREHGKLPK+YLKGLQ+NNEVVELRNRVESFSAQFAMPGFE
Sbjct: 542 IAISVQREHGKLPKAYLKGLQNNNEVVELRNRVESFSAQFAMPGFE 587

[Close]
BLAST of Spg002867 vs. ExPASy TrEMBL
Match: A0A6J1IXT5 (Serine hydroxymethyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111479489 PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 7.9e-51
Identity = 101/106 (95.28%), Postives = 104/106 (98.11%), Query Frame = 0 

Query: 57  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQ 116
           KNYE VCEICHITLNKITIFGDNGIIIPGGVR+GTPAMTSRGCLESDFETIADFLHTAAQ
Sbjct: 482 KNYENVCEICHITLNKITIFGDNGIIIPGGVRVGTPAMTSRGCLESDFETIADFLHTAAQ 541

Query: 117 IAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQFAMPGFE 163
           IAISVQRE+GKLPK+YLKGL SNNEVVELRNRVESFSAQFAMPGFE
Sbjct: 542 IAISVQREYGKLPKTYLKGLLSNNEVVELRNRVESFSAQFAMPGFE 587

[Close]
BLAST of Spg002867 vs. ExPASy TrEMBL
Match: A0A6J1FV71 (Serine hydroxymethyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111447145 PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 7.9e-51
Identity = 101/106 (95.28%), Postives = 104/106 (98.11%), Query Frame = 0 

Query: 57  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQ 116
           KNYE VCEICHITLNKITIFGDNGIIIPGGVR+GTPAMTSRGCLESDFETIADFLHTAAQ
Sbjct: 482 KNYENVCEICHITLNKITIFGDNGIIIPGGVRVGTPAMTSRGCLESDFETIADFLHTAAQ 541

Query: 117 IAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQFAMPGFE 163
           IAISVQRE+GKLPK+YLKGL SNNEVVELRNRVESFSAQFAMPGFE
Sbjct: 542 IAISVQREYGKLPKTYLKGLLSNNEVVELRNRVESFSAQFAMPGFE 587

[Close]
BLAST of Spg002867 vs. ExPASy TrEMBL
Match: A0A6J1E9K3 (Serine hydroxymethyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111430628 PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 1.2e-43
Identity = 89/107 (83.18%), Postives = 98/107 (91.59%), Query Frame = 0 

Query: 57  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQ 116
           KN+E+VCE+CHITLNKITIFGDNGII PGGVRIGTPAMTSRGCLESDFE I +FLH AAQ
Sbjct: 482 KNFEQVCEMCHITLNKITIFGDNGIITPGGVRIGTPAMTSRGCLESDFEVIVEFLHIAAQ 541

Query: 117 IAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQFAMPGFET 164
           IAI VQRE+GKLPK++L+GLQSNNEVVEL  RV SFSA+FAMPG ET
Sbjct: 542 IAIVVQRENGKLPKAFLRGLQSNNEVVELGYRVASFSAKFAMPGLET 588

[Close]
BLAST of Spg002867 vs. ExPASy TrEMBL
Match: A0A6J1JAX6 (Serine hydroxymethyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111482831 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.6e-43
Identity = 88/107 (82.24%), Postives = 97/107 (90.65%), Query Frame = 0 

Query: 57  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQ 116
           KN+E+VCE+CHITLNKITIFGDNGII PGGVRIGTPAMTSRGCLESDFE I +FLH AAQ
Sbjct: 478 KNFEQVCEMCHITLNKITIFGDNGIITPGGVRIGTPAMTSRGCLESDFEVIVEFLHIAAQ 537

Query: 117 IAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQFAMPGFET 164
           IA+ VQREHGKLPK +L+GLQS+NEVVEL  RV SFSA+FAMPG ET
Sbjct: 538 IAVVVQREHGKLPKPFLRGLQSSNEVVELGYRVASFSAKFAMPGLET 584

[Close]
BLAST of Spg002867 vs. TAIR 10
Match: AT1G22020.1 (serine hydroxymethyltransferase 6 )

HSP 1 Score: 154.5 bits (389), Expect = 7.6e-38
Identity = 70/106 (66.04%), Postives = 87/106 (82.08%), Query Frame = 0 

Query: 57  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQ 116
           K YEKVCE+CHIT+NK+ IF +NG+I PGGVRIG+PAMTSRGCLE +FET+ADFL+ AAQ
Sbjct: 493 KVYEKVCEMCHITVNKVAIFSENGVISPGGVRIGSPAMTSRGCLEPEFETMADFLYRAAQ 552

Query: 117 IAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQFAMPGFE 163
           IA + QREHGKL K  LK +    E+ +LRN+VE+F+ QFAMP F+
Sbjct: 553 IASAAQREHGKLQKEPLKSIYHCKEIADLRNQVEAFATQFAMPAFD 598

[Close]
BLAST of Spg002867 vs. TAIR 10
Match: AT1G36370.1 (serine hydroxymethyltransferase 7 )

HSP 1 Score: 153.7 bits (387), Expect = 1.3e-37
Identity = 71/103 (68.93%), Postives = 85/103 (82.52%), Query Frame = 0 

Query: 57  KNYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQ 116
           K YEKVCE+CHITLNK  IFGDNG I PGGVRIGTPAMT+RGC+ESDFET+ADFL  AAQ
Sbjct: 489 KVYEKVCEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTTRGCIESDFETMADFLIKAAQ 548

Query: 117 IAISVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQFAMP 160
           I  ++QREHGK  K ++K L +N ++ ELRNRVE+F+ Q+ MP
Sbjct: 549 ITSALQREHGKSHKEFVKSLCTNKDIAELRNRVEAFALQYEMP 591

[Close]
BLAST of Spg002867 vs. TAIR 10
Match: AT4G13890.1 (Pyridoxal phosphate (PLP)-dependent transferases superfamily protein )

HSP 1 Score: 127.1 bits (318), Expect = 1.3e-29
Identity = 56/102 (54.90%), Postives = 74/102 (72.55%), Query Frame = 0 

Query: 60  EKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAI 119
           EKVCE+C+ITLN+  +FGD   + PGGVRIGTPAMTSRG +E DFE I +FLH A  I +
Sbjct: 361 EKVCELCYITLNRNAVFGDTSFLAPGGVRIGTPAMTSRGLVEKDFEKIGEFLHRAVTITL 420

Query: 120 SVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQFAMPGF 162
            +Q ++GK+ K + KGL +N E+ E++  VE F+  F MPGF
Sbjct: 421 DIQEQYGKVMKDFNKGLVNNKEIDEIKADVEEFTYDFDMPGF 462

[Close]
BLAST of Spg002867 vs. TAIR 10
Match: AT4G13930.1 (serine hydroxymethyltransferase 4 )

HSP 1 Score: 119.4 bits (298), Expect = 2.7e-27
Identity = 53/102 (51.96%), Postives = 73/102 (71.57%), Query Frame = 0 

Query: 60  EKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFETIADFLHTAAQIAI 119
           EK+C++C ITLNK  +FGD+  + PGGVRIG PAMTSRG +E DFE I +FL  A  + +
Sbjct: 361 EKLCDLCSITLNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEQIGEFLSRAVTLTL 420

Query: 120 SVQREHGKLPKSYLKGLQSNNEVVELRNRVESFSAQFAMPGF 162
            +Q+ +GKL K + KGL +N ++ +L+  VE FSA + MPGF
Sbjct: 421 DIQKTYGKLLKDFNKGLVNNKDLDQLKADVEKFSASYEMPGF 462

[Close]
BLAST of Spg002867 vs. TAIR 10
Match: AT5G26780.1 (serine hydroxymethyltransferase 2 )

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-18
Identity = 49/122 (40.16%), Postives = 74/122 (60.66%), Query Frame = 0 

Query: 51  LYNIRRK-----NYEKVCEICHITLNKITIFGDNGIIIPGGVRIGTPAMTSRGCLESDFE 110
           L N++ K       EKV E+ HI  NK T+ GD   ++PGG+R+GTPA+TSRG +E DF 
Sbjct: 388 LVNLKNKGIDGSRVEKVLELVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFIEEDFA 447

Query: 111 TIADFLHTAAQIAISVQRE-HGKLPKSYLKGLQSN----NEVVELRNRVESFSAQFAMPG 163
            +A++   A +IA+ ++ E  G   K ++  +QSN    +E+ +LR  VE ++ QF   G
Sbjct: 448 KVAEYFDLAVKIALKIKAESQGTKLKDFVATMQSNEKLQSEMSKLREMVEEYAKQFPTIG 507

The following BLAST results are available for this feature:
BLAST of Spg002867 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022149204.11.2e-5095.28serine hydroxymethyltransferase 7-like [Momordica charantia] >XP_022149205.1 ser... [more]
XP_022979958.11.6e-5095.28serine hydroxymethyltransferase 7-like [Cucurbita maxima][more]
XP_023547556.11.6e-5095.28serine hydroxymethyltransferase 7-like [Cucurbita pepo subsp. pepo][more]
XP_022941930.11.6e-5095.28serine hydroxymethyltransferase 7-like [Cucurbita moschata] >KAG6600365.1 Serine... [more]
KAG6576983.13.9e-4484.11Serine hydroxymethyltransferase 7, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Spg002867 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LM591.1e-3666.04Serine hydroxymethyltransferase 6 OS=Arabidopsis thaliana OX=3702 GN=SHM6 PE=2 S... [more]
Q84WV01.8e-3668.93Serine hydroxymethyltransferase 7 OS=Arabidopsis thaliana OX=3702 GN=SHM7 PE=2 S... [more]
Q9SVM41.8e-2854.90Serine hydroxymethyltransferase 5 OS=Arabidopsis thaliana OX=3702 GN=SHM5 PE=3 S... [more]
O232543.8e-2651.96Serine hydroxymethyltransferase 4 OS=Arabidopsis thaliana OX=3702 GN=SHM4 PE=1 S... [more]
Q54EW18.2e-2135.67Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum OX=44689 GN=shmt2 ... [more]
BLAST of Spg002867 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D7A86.0e-5195.28Serine hydroxymethyltransferase OS=Momordica charantia OX=3673 GN=LOC111017683 P... [more]
A0A6J1IXT57.9e-5195.28Serine hydroxymethyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111479489 PE=3... [more]
A0A6J1FV717.9e-5195.28Serine hydroxymethyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111447145 PE... [more]
A0A6J1E9K31.2e-4383.18Serine hydroxymethyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111430628 PE... [more]
A0A6J1JAX61.6e-4382.24Serine hydroxymethyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111482831 PE=3... [more]
BLAST of Spg002867 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G22020.17.6e-3866.04serine hydroxymethyltransferase 6 [more]
AT1G36370.11.3e-3768.93serine hydroxymethyltransferase 7 [more]
AT4G13890.11.3e-2954.90Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [more]
AT4G13930.12.7e-2751.96serine hydroxymethyltransferase 4 [more]
AT5G26780.11.0e-1840.16serine hydroxymethyltransferase 2 [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015422Pyridoxal phosphate-dependent transferase, small domainGENE3D3.90.1150.10Aspartate Aminotransferase, domain 1coord: 50..158
e-value: 2.3E-29
score: 103.9
IPR039429Serine hydroxymethyltransferase-like domainPFAMPF00464SHMTcoord: 54..110
e-value: 7.4E-13
score: 47.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..37
NoneNo IPR availablePANTHERPTHR11680:SF7SERINE HYDROXYMETHYLTRANSFERASE 7coord: 53..162
IPR001085Serine hydroxymethyltransferasePANTHERPTHR11680SERINE HYDROXYMETHYLTRANSFERASEcoord: 53..162
IPR015424Pyridoxal phosphate-dependent transferaseSUPERFAMILY53383PLP-dependent transferasescoord: 52..161

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg002867.1Spg002867.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046655 folic acid metabolic process
biological_process GO:0019264 glycine biosynthetic process from serine
biological_process GO:0006565 L-serine catabolic process
biological_process GO:0032259 methylation
biological_process GO:0035999 tetrahydrofolate interconversion
cellular_component GO:0005737 cytoplasm
molecular_function GO:0004372 glycine hydroxymethyltransferase activity
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0070905 serine binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003824 catalytic activity