Spg002860 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg002860
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	BHLH domain-containing protein
Location	scaffold6: 1949213 .. 1950200 (-)
RNA-Seq Expression	Spg002860
Synteny	Spg002860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCCTTTCAATGATCCCTCAAACGATCATCAAACCCATCTACAAAATCTCTTTGCTCCTCCAATTTCAGCCTCAGAAGGAAGCAGTGATTTCAATGCCAACAAAATGGAAAGCACCCACCAAAAAATGGTGTCAAATTCTGAAACTGTGGGCGAAGAGAAAAGGATTATGCACAGAGACCTCGAACGAGAAAGAAGGAAACAAATGGCCTCTCTTCTCACCGACCTTCGATCTTTGCTTCCTCTTGAATTCATAAAGGTAAAGAAAATTTTTCAAAATTCCATCCTTTTTCCTTTTCTTTTTTGTTGATTTGTGTAATGATTTTTAACTGGGATCTTGAGAGGATTTTAGGGTAGGCGTACGAGGGCCGATATTGTTGATGAGGCTGTGAATTATATTGAACACTTAAGAGGGAAGATCGGTGATCTTCGTGTTAGAAGAGATGAATTAAAGAGGCTGCATTTGGAATCCTCGAGTTGCCATAATGAAAGTTCCAATCTTTGTTCGTCAAGTTGCGTTGTAATTAATCCATATTCAGGAGGGTTGGAGATTGTGATAAGTAGTTTCTATAGAGAGGAAATTTTGCAACTTTCAGAAGTGATGAGAATTCTGCTTGAAGAAAGTATTGAGGTTGAAAGTTGTGCTTCTACCAAAATAAATGAAAGGATGTTGCACACCATTCAGACAAAGGTTGCTTTGATTGATCTGATCGTTTTTGTAGAGAATTTGAACTTTTTTTTTTCAATTTTTAGACGTTGATTTTCTTTGTTTTTGTTTCTCAGGTAGATGATTCAAGGAGGATTGATCTACATGAACTGCAGCAAAAATTATATCAAGTTTGCAATTCTGGATCATTTGGTGCTTAATTTCTCTCTATTCTTTTCCTTTATTTGTTCGAGTTGTAGGAGGTTTAATTTATTCGTCAAGTGTTCTGGTTCTAAGAACATTTATGCCTTTTTCTCTCCTTATCAACAATGGATACACC

mRNA sequence

ATGTTTCCTTTCAATGATCCCTCAAACGATCATCAAACCCATCTACAAAATCTCTTTGCTCCTCCAATTTCAGCCTCAGAAGGAAGCAGTGATTTCAATGCCAACAAAATGGAAAGCACCCACCAAAAAATGGTGTCAAATTCTGAAACTGTGGGCGAAGAGAAAAGGATTATGCACAGAGACCTCGAACGAGAAAGAAGGAAACAAATGGCCTCTCTTCTCACCGACCTTCGATCTTTGCTTCCTCTTGAATTCATAAAGGGTAGGCGTACGAGGGCCGATATTGTTGATGAGGCTGTGAATTATATTGAACACTTAAGAGGGAAGATCGGTGATCTTCGTGTTAGAAGAGATGAATTAAAGAGGCTGCATTTGGAATCCTCGAGTTGCCATAATGAAAGTTCCAATCTTTGTTCGTCAAGTTGCGTTGTAATTAATCCATATTCAGGAGGGTTGGAGATTGTGATAAGTAGTTTCTATAGAGAGGAAATTTTGCAACTTTCAGAAGTGATGAGAATTCTGCTTGAAGAAAGTATTGAGGTAGATGATTCAAGGAGGATTGATCTACATGAACTGCAGCAAAAATTATATCAAGTTTGCAATTCTGGATCATTTGGTGCTTAA

Coding sequence (CDS)

ATGTTTCCTTTCAATGATCCCTCAAACGATCATCAAACCCATCTACAAAATCTCTTTGCTCCTCCAATTTCAGCCTCAGAAGGAAGCAGTGATTTCAATGCCAACAAAATGGAAAGCACCCACCAAAAAATGGTGTCAAATTCTGAAACTGTGGGCGAAGAGAAAAGGATTATGCACAGAGACCTCGAACGAGAAAGAAGGAAACAAATGGCCTCTCTTCTCACCGACCTTCGATCTTTGCTTCCTCTTGAATTCATAAAGGGTAGGCGTACGAGGGCCGATATTGTTGATGAGGCTGTGAATTATATTGAACACTTAAGAGGGAAGATCGGTGATCTTCGTGTTAGAAGAGATGAATTAAAGAGGCTGCATTTGGAATCCTCGAGTTGCCATAATGAAAGTTCCAATCTTTGTTCGTCAAGTTGCGTTGTAATTAATCCATATTCAGGAGGGTTGGAGATTGTGATAAGTAGTTTCTATAGAGAGGAAATTTTGCAACTTTCAGAAGTGATGAGAATTCTGCTTGAAGAAAGTATTGAGGTAGATGATTCAAGGAGGATTGATCTACATGAACTGCAGCAAAAATTATATCAAGTTTGCAATTCTGGATCATTTGGTGCTTAA

Protein sequence

MFPFNDPSNDHQTHLQNLFAPPISASEGSSDFNANKMESTHQKMVSNSETVGEEKRIMHRDLERERRKQMASLLTDLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKIGDLRVRRDELKRLHLESSSCHNESSNLCSSSCVVINPYSGGLEIVISSFYREEILQLSEVMRILLEESIEVDDSRRIDLHELQQKLYQVCNSGSFGA

Homology

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BLAST of Spg002860 vs. NCBI nr
Match: XP_022984444.1 (transcription factor bHLH118-like [Cucurbita maxima])

HSP 1 Score: 236.1 bits (601), Expect = 2.7e-58
Identity = 138/227 (60.79%), Postives = 161/227 (70.93%), Query Frame = 0


Query: 1   MFPFNDPSNDHQTHLQNLFAPPISASEGSSDFNANKMESTHQKMVSNSETVGEEKRIMHR 60
           MFPFNDPS+ HQ H        +S  EGSS+ NANK+ESTH           E ++I+HR
Sbjct: 1   MFPFNDPSHHHQPH-------QLSGCEGSSELNANKIESTH----------NEVRQIVHR 60

Query: 61  DLERERRKQMASLLTDLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKIGDLRVRRDEL 120
           DLERERRKQM SL TDLRSLLPL  ++GRRTRADIVDEAVNYIEHLRGKI +L+V+RD +
Sbjct: 61  DLERERRKQMGSLFTDLRSLLPLPLVEGRRTRADIVDEAVNYIEHLRGKISELQVKRDAI 120

Query: 121 KRLHLESSSCHNESSNLCSSSCVVINPYSGGLEIVISSFYREEILQLSEVMRILLEESIE 180
           K LHL+      ESS+LC SSCVVI PYSGGLEI+IS F RE+ L+LSEVMR+L+EESIE
Sbjct: 121 KGLHLD------ESSDLCPSSCVVIKPYSGGLEIMISIF-REQNLELSEVMRVLVEESIE 180

Query: 181 --------------------VDDSRRIDLHELQQKLYQVCNSGSFGA 208
                               VDD +RID+HELQQKL+QVC S SFGA
Sbjct: 181 IMSCASTKVKERMLHTIHTKVDDPKRIDVHELQQKLHQVCTSVSFGA 203

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BLAST of Spg002860 vs. NCBI nr
Match: XP_038877683.1 (transcription factor bHLH118-like [Benincasa hispida])

HSP 1 Score: 234.2 bits (596), Expect = 1.0e-57
Identity = 144/229 (62.88%), Postives = 166/229 (72.49%), Query Frame = 0


Query: 1   MFPFNDPS-NDHQTHLQNLFAPP-ISASEGSSD---FNANKMESTHQKMVSNSETVGEEK 60
           MFPFNDPS +D+Q+HLQNLF+   IS  EGSS     N ++++ T         T  EE+
Sbjct: 1   MFPFNDPSHHDYQSHLQNLFSSQLISLPEGSSSDNYLNTDRIQIT---------TQNEER 60

Query: 61  RIMHRDLERERRKQMASLLTDLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKIGDLRV 120
           +IMHRDLERERRKQMASLLT+LRSLLPLEFIKG+RTRADIVDEAVNYIEHLRGKI +L+V
Sbjct: 61  KIMHRDLERERRKQMASLLTNLRSLLPLEFIKGKRTRADIVDEAVNYIEHLRGKISELQV 120

Query: 121 RRDE-LKRLHLESSSCHNE-SSNLCSSSCVVINPYSGGLEIVISSFYREEILQLSEVMRI 180
           +R   LKRL+ ESSSC N+  +NL S SCVVI PYSGGLEIVIS+   EE  QLS VMR+
Sbjct: 121 KRYAILKRLNFESSSCDNQCCNNLSSPSCVVIKPYSGGLEIVISNCIMEENFQLSGVMRV 180

Query: 181 LLEESIE--------------------VDDSRRIDLHELQQKLYQVCNS 203
           L E+SI+                    VDDS RIDLHELQQKLYQVCNS
Sbjct: 181 LFEQSIQIESCAATKVKERMLHTIQTKVDDSSRIDLHELQQKLYQVCNS 220

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BLAST of Spg002860 vs. NCBI nr
Match: XP_022923000.1 (transcription factor bHLH118-like [Cucurbita moschata])

HSP 1 Score: 229.6 bits (584), Expect = 2.5e-56
Identity = 136/227 (59.91%), Postives = 157/227 (69.16%), Query Frame = 0


Query: 1   MFPFNDPSNDHQTHLQNLFAPPISASEGSSDFNANKMESTHQKMVSNSETVGEEKRIMHR 60
           MFPFN PS+ HQ H        +S  EGSS+ N NK+ESTH           E ++I+HR
Sbjct: 1   MFPFNHPSHHHQPH-------QLSGCEGSSELNPNKIESTH----------NEVRKIVHR 60

Query: 61  DLERERRKQMASLLTDLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKIGDLRVRRDEL 120
           DLERERRKQM SLLT+LRSLLPL+ ++GRRTRADIVDEAVNYIEH RGKI +L V+RD +
Sbjct: 61  DLERERRKQMLSLLTNLRSLLPLQLVEGRRTRADIVDEAVNYIEHFRGKISELHVKRDAI 120

Query: 121 KRLHLESSSCHNESSNLCSSSCVVINPYSGGLEIVISSFYREEILQLSEVMRILLEESIE 180
           K LHL+      ESS+LC SSCVVI PYSGGLEIVIS F RE+ L+LSEVMR+LLEESIE
Sbjct: 121 KGLHLD------ESSDLCPSSCVVIKPYSGGLEIVISIF-REQNLELSEVMRVLLEESIE 180

Query: 181 --------------------VDDSRRIDLHELQQKLYQVCNSGSFGA 208
                               VDD  RID+HELQQKLY+VC   SFGA
Sbjct: 181 ITSCASTKVKEMMLHTIHTKVDDPTRIDVHELQQKLYRVCTFVSFGA 203

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BLAST of Spg002860 vs. NCBI nr
Match: KAG6576761.1 (Transcription factor basic helix-loop-helix 118, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 229.2 bits (583), Expect = 3.3e-56
Identity = 136/227 (59.91%), Postives = 158/227 (69.60%), Query Frame = 0


Query: 1   MFPFNDPSNDHQTHLQNLFAPPISASEGSSDFNANKMESTHQKMVSNSETVGEEKRIMHR 60
           MFPFN PS+ HQ H        +S  EGSS+ NANK+ESTH           E ++I+HR
Sbjct: 1   MFPFNHPSHHHQPH-------QLSGCEGSSELNANKIESTH----------NEVRKIVHR 60

Query: 61  DLERERRKQMASLLTDLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKIGDLRVRRDEL 120
           DLERERRKQM SLLT+LRSLLPL+ ++GRRTRADIVDEAVNYIEHLRGK+ +L V+RD +
Sbjct: 61  DLERERRKQMLSLLTNLRSLLPLQLVEGRRTRADIVDEAVNYIEHLRGKMSELHVKRDAI 120

Query: 121 KRLHLESSSCHNESSNLCSSSCVVINPYSGGLEIVISSFYREEILQLSEVMRILLEESIE 180
           K LHL      +ESS+LC SSC+VI PYS GLEIVIS F RE+ L+LSEVMR+LLEESIE
Sbjct: 121 KGLHLA-----DESSDLCPSSCIVIKPYSCGLEIVISIF-REQNLELSEVMRVLLEESIE 180

Query: 181 --------------------VDDSRRIDLHELQQKLYQVCNSGSFGA 208
                               VDD  RID+HELQQKLYQVC   SFGA
Sbjct: 181 ITSCASTKVKERMLHTIHTKVDDPTRIDVHELQQKLYQVCTFVSFGA 204

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BLAST of Spg002860 vs. NCBI nr
Match: XP_008439139.1 (PREDICTED: transcription factor bHLH36-like [Cucumis melo] >XP_008439141.1 PREDICTED: transcription factor bHLH36-like [Cucumis melo] >XP_008439142.1 PREDICTED: transcription factor bHLH36-like [Cucumis melo] >XP_016898946.1 PREDICTED: transcription factor bHLH36-like [Cucumis melo])

HSP 1 Score: 215.7 bits (548), Expect = 3.8e-52
Identity = 137/229 (59.83%), Postives = 165/229 (72.05%), Query Frame = 0


Query: 1   MFPFNDPSND---HQTHLQNLFA-PPISASEGSSDFNANKMESTHQKMVSNSETVGEEKR 60
           MFPFND S+D   +Q HLQNLF+   IS+ EG S  N N    T+ K+  +  T  EEK+
Sbjct: 1   MFPFNDSSHDIDNYQIHLQNLFSYQLISSQEGGSSENLN----TNNKI--DETTQNEEKK 60

Query: 61  IMHRDLERERRKQMASLLTDLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKIGDLRVR 120
           IMHRD+ERERRKQMASLLT+LRSLLPLEFIKGRR+R DIVDEAVNYIE+LRGKI +L ++
Sbjct: 61  IMHRDVERERRKQMASLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGKINELHLK 120

Query: 121 RDEL-KRLHLE-SSSCHNESSNLCSSSCVVINPYSGGLEIVISS-FYREEILQLSEVMRI 180
           RD + KRLHLE SSSC+N+   + S+SCVVI  YSGGLEIVIS+    E+  QLS VMR+
Sbjct: 121 RDAIVKRLHLESSSSCNND---IPSTSCVVIKQYSGGLEIVISNGIISEQNFQLSGVMRV 180

Query: 181 LLEESIE--------------------VDDSRRIDLHELQQKLYQVCNS 203
           L+E+SIE                    VDDS +IDLHEL+Q+LYQVCNS
Sbjct: 181 LIEQSIEIETCSSTKLNERMLYTIQTKVDDSTKIDLHELKQRLYQVCNS 220

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BLAST of Spg002860 vs. ExPASy Swiss-Prot
Match: Q9FLI0 (Transcription factor bHLH120 OS=Arabidopsis thaliana OX=3702 GN=BHLH120 PE=2 SV=2)

HSP 1 Score: 87.8 bits (216), Expect = 1.6e-16
Identity = 62/171 (36.26%), Postives = 97/171 (56.73%), Query Frame = 0


Query: 35  NKMESTHQK-MVSNSETVGEEKRIMHRDLERERRKQMASLLTDLRSLLPLEFIKGRRTRA 94
           N  ++ HQ  M    +   +EK+++HR++ER+RR++MA L   LRS LPL++IKG+R  +
Sbjct: 6   NPKKTRHQSHMPQERDETKKEKKLLHRNIERQRRQEMAILFASLRSQLPLKYIKGKRAMS 65

Query: 95  DIVDEAVNYIEHLRGKIGDLRVRRDELKRLHLESSSCHNESSNLCSS----SCVVINPYS 154
           D V+ AV++I+  + +I DL  RRDELKR   + +S     S   SS    + V++ P  
Sbjct: 66  DHVNGAVSFIKDTQTRIKDLSARRDELKREIGDPTSLTGSGSGSGSSRSEPASVMVQPCV 125

Query: 155 GGLEIVISSFYRE-EILQLSEVMRILLEESIEVDDSRRIDLHELQQKLYQV 200
            G E+V+SS     E   LS V+ +L  + +EV  S    ++E      QV
Sbjct: 126 SGFEVVVSSLASGLEAWPLSRVLEVLHGQGLEVISSLTARVNERLMYTIQV 176

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BLAST of Spg002860 vs. ExPASy Swiss-Prot
Match: Q9STJ6 (Transcription factor bHLH126 OS=Arabidopsis thaliana OX=3702 GN=BHLH126 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-15
Identity = 57/161 (35.40%), Postives = 94/161 (58.39%), Query Frame = 0


Query: 53  EEKRIMHRDLERERRKQMASLLTDLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKIGD 112
           ++K+++HRD+ER+RR++MA+L   LR+ LPL++IKG+R  +D V+ AVN+I+    +I +
Sbjct: 41  KKKKLLHRDIERQRRQEMATLFATLRTHLPLKYIKGKRAVSDHVNGAVNFIKDTEARIKE 100

Query: 113 LRVRRDELKRLHLESSSCHNESSNLCSS------SCVVINPYSGGLEIVISS-FYREEIL 172
           L  RRDEL R   +    + +     S       + V++ P+  GLE+V+SS     E L
Sbjct: 101 LSARRDELSRETGQGYKSNPDPGKTGSDVGKSEPATVMVQPHVSGLEVVVSSNSSGPEAL 160

Query: 173 QLSEVMRILLEESIEVDDSRRIDLHELQQKLYQVCNSGSFG 207
            LS+V+  + E+ +EV  S    +++      QV    SFG
Sbjct: 161 PLSKVLETIQEKGLEVMSSFTTRVNDRLMHTIQV-EVNSFG 200

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BLAST of Spg002860 vs. ExPASy Swiss-Prot
Match: Q9STJ7 (Transcription factor bHLH118 OS=Arabidopsis thaliana OX=3702 GN=BHLH118 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.2e-15
Identity = 55/129 (42.64%), Postives = 82/129 (63.57%), Query Frame = 0


Query: 55  KRIMHRDLERERRKQMASLLTDLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKIGDLR 114
           ++++H+++E+ RR++MASL   LRSLLPLEFI+G+R+ +D V  AVNYI++L+  I D+ 
Sbjct: 2   EKLVHKEIEKRRRQEMASLYASLRSLLPLEFIQGKRSTSDQVKGAVNYIDYLQRNIKDIN 61

Query: 115 VRRDELKRLHLESSSCHNESSNLCSSSCVVINPYSGGLEIVISSFYREEILQ--LSEVMR 174
            +RD+L  L   S    NE      S+ VVI P   G+EIV+S      ILQ   S V++
Sbjct: 62  SKRDDLVLLSGRSFRSSNEQEWNEISNHVVIRPCLVGIEIVLS------ILQTPFSSVLQ 121

Query: 175 ILLEESIEV 182
           +L E  + V
Sbjct: 122 VLREHGLYV 124

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BLAST of Spg002860 vs. ExPASy Swiss-Prot
Match: Q9FLI1 (Transcription factor bHLH36 OS=Arabidopsis thaliana OX=3702 GN=BHLH36 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.5e-15
Identity = 52/128 (40.62%), Postives = 80/128 (62.50%), Query Frame = 0


Query: 55  KRIMHRDLERERRKQMASLLTDLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKIGDLR 114
           +++MHR+ ER+RR++MASL   LRSLLPL FIKG+R+ +D V+EAVNYI++L+ KI +L 
Sbjct: 2   EKMMHRETERQRRQEMASLYASLRSLLPLHFIKGKRSTSDQVNEAVNYIKYLQRKIKELS 61

Query: 115 VRRDEL------KRLHLESSSCHNESSNLCSSSCVVINPYSGGLEIVISSFYREEILQLS 174
           VRRD+L        L   +     +   +   + VV+     G+EI++SS       + S
Sbjct: 62  VRRDDLMVLSRGSLLGSSNGDFKEDVEMISGKNHVVVRQCLVGVEIMLSSRCCGGQPRFS 121

Query: 175 EVMRILLE 177
            V+++L E
Sbjct: 122 SVLQVLSE 129

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BLAST of Spg002860 vs. ExPASy Swiss-Prot
Match: Q9LN95 (Transcription factor bHLH55 OS=Arabidopsis thaliana OX=3702 GN=BHLH55 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.5e-14
Identity = 63/167 (37.72%), Postives = 92/167 (55.09%), Query Frame = 0


Query: 22  PISASEGSSDFNANKMESTHQ-KMVSNSETVGEEKRIMHRDLERERRKQMASLLTDLRSL 81
           P+  S G  +      E+T     +   +   + KR  H++LER+RR++  SL   LR L
Sbjct: 41  PVIHSAGIENDGRQNCETTMTLSEIMKGDDEPKNKRAKHKELERQRRQENTSLFKILRYL 100

Query: 82  LPLEFIKGRRTRADIVDEAVNYIEHLRGKIGDLRVRRDELKRLHLESSSCHNES-SNLCS 141
           LP ++IKG+R+ AD V EAVNYI+ L+ KI ++  +RD +KR     SS    S  +L S
Sbjct: 101 LPSQYIKGKRSSADHVLEAVNYIKDLQKKIKEVSEKRDRIKRSITHPSSRGEFSIRSLAS 160

Query: 142 SSC---------VVINPYSGGLEIVISSFYREEILQLSEVMRILLEE 178
           S+C         VV+ P   GLEIV+S   R E   LS V+++L +E
Sbjct: 161 STCSCVGDTNIAVVVRPCLIGLEIVVSCCNRHESC-LSSVLQLLAQE 206

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BLAST of Spg002860 vs. ExPASy TrEMBL
Match: A0A6J1JAJ0 (transcription factor bHLH118-like OS=Cucurbita maxima OX=3661 GN=LOC111482745 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.3e-58
Identity = 138/227 (60.79%), Postives = 161/227 (70.93%), Query Frame = 0


Query: 1   MFPFNDPSNDHQTHLQNLFAPPISASEGSSDFNANKMESTHQKMVSNSETVGEEKRIMHR 60
           MFPFNDPS+ HQ H        +S  EGSS+ NANK+ESTH           E ++I+HR
Sbjct: 1   MFPFNDPSHHHQPH-------QLSGCEGSSELNANKIESTH----------NEVRQIVHR 60

Query: 61  DLERERRKQMASLLTDLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKIGDLRVRRDEL 120
           DLERERRKQM SL TDLRSLLPL  ++GRRTRADIVDEAVNYIEHLRGKI +L+V+RD +
Sbjct: 61  DLERERRKQMGSLFTDLRSLLPLPLVEGRRTRADIVDEAVNYIEHLRGKISELQVKRDAI 120

Query: 121 KRLHLESSSCHNESSNLCSSSCVVINPYSGGLEIVISSFYREEILQLSEVMRILLEESIE 180
           K LHL+      ESS+LC SSCVVI PYSGGLEI+IS F RE+ L+LSEVMR+L+EESIE
Sbjct: 121 KGLHLD------ESSDLCPSSCVVIKPYSGGLEIMISIF-REQNLELSEVMRVLVEESIE 180

Query: 181 --------------------VDDSRRIDLHELQQKLYQVCNSGSFGA 208
                               VDD +RID+HELQQKL+QVC S SFGA
Sbjct: 181 IMSCASTKVKERMLHTIHTKVDDPKRIDVHELQQKLHQVCTSVSFGA 203

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BLAST of Spg002860 vs. ExPASy TrEMBL
Match: A0A6J1EAE1 (transcription factor bHLH118-like OS=Cucurbita moschata OX=3662 GN=LOC111430817 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 1.2e-56
Identity = 136/227 (59.91%), Postives = 157/227 (69.16%), Query Frame = 0


Query: 1   MFPFNDPSNDHQTHLQNLFAPPISASEGSSDFNANKMESTHQKMVSNSETVGEEKRIMHR 60
           MFPFN PS+ HQ H        +S  EGSS+ N NK+ESTH           E ++I+HR
Sbjct: 1   MFPFNHPSHHHQPH-------QLSGCEGSSELNPNKIESTH----------NEVRKIVHR 60

Query: 61  DLERERRKQMASLLTDLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKIGDLRVRRDEL 120
           DLERERRKQM SLLT+LRSLLPL+ ++GRRTRADIVDEAVNYIEH RGKI +L V+RD +
Sbjct: 61  DLERERRKQMLSLLTNLRSLLPLQLVEGRRTRADIVDEAVNYIEHFRGKISELHVKRDAI 120

Query: 121 KRLHLESSSCHNESSNLCSSSCVVINPYSGGLEIVISSFYREEILQLSEVMRILLEESIE 180
           K LHL+      ESS+LC SSCVVI PYSGGLEIVIS F RE+ L+LSEVMR+LLEESIE
Sbjct: 121 KGLHLD------ESSDLCPSSCVVIKPYSGGLEIVISIF-REQNLELSEVMRVLLEESIE 180

Query: 181 --------------------VDDSRRIDLHELQQKLYQVCNSGSFGA 208
                               VDD  RID+HELQQKLY+VC   SFGA
Sbjct: 181 ITSCASTKVKEMMLHTIHTKVDDPTRIDVHELQQKLYRVCTFVSFGA 203

[Close]

BLAST of Spg002860 vs. ExPASy TrEMBL
Match: A0A1S3AY11 (transcription factor bHLH36-like OS=Cucumis melo OX=3656 GN=LOC103484025 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.8e-52
Identity = 137/229 (59.83%), Postives = 165/229 (72.05%), Query Frame = 0


Query: 1   MFPFNDPSND---HQTHLQNLFA-PPISASEGSSDFNANKMESTHQKMVSNSETVGEEKR 60
           MFPFND S+D   +Q HLQNLF+   IS+ EG S  N N    T+ K+  +  T  EEK+
Sbjct: 1   MFPFNDSSHDIDNYQIHLQNLFSYQLISSQEGGSSENLN----TNNKI--DETTQNEEKK 60

Query: 61  IMHRDLERERRKQMASLLTDLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKIGDLRVR 120
           IMHRD+ERERRKQMASLLT+LRSLLPLEFIKGRR+R DIVDEAVNYIE+LRGKI +L ++
Sbjct: 61  IMHRDVERERRKQMASLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGKINELHLK 120

Query: 121 RDEL-KRLHLE-SSSCHNESSNLCSSSCVVINPYSGGLEIVISS-FYREEILQLSEVMRI 180
           RD + KRLHLE SSSC+N+   + S+SCVVI  YSGGLEIVIS+    E+  QLS VMR+
Sbjct: 121 RDAIVKRLHLESSSSCNND---IPSTSCVVIKQYSGGLEIVISNGIISEQNFQLSGVMRV 180

Query: 181 LLEESIE--------------------VDDSRRIDLHELQQKLYQVCNS 203
           L+E+SIE                    VDDS +IDLHEL+Q+LYQVCNS
Sbjct: 181 LIEQSIEIETCSSTKLNERMLYTIQTKVDDSTKIDLHELKQRLYQVCNS 220

[Close]

BLAST of Spg002860 vs. ExPASy TrEMBL
Match: A0A6J1CHG5 (transcription factor bHLH36-like OS=Momordica charantia OX=3673 GN=LOC111011678 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 4.5e-51
Identity = 127/207 (61.35%), Postives = 152/207 (73.43%), Query Frame = 0


Query: 24  SASEGSS-DFNANKMESTHQKMVSNSETVG----EEKRIMHRDLERERRKQMASLLTDLR 83
           SA EGSS DF      +THQ +VSNSE VG    ++++IMHRDLERERRKQMASLLT+LR
Sbjct: 11  SAPEGSSCDF------TTHQNLVSNSENVGRTDDQDRKIMHRDLERERRKQMASLLTNLR 70

Query: 84  SLLPLEFIKGRRTRADIVDEAVNYIEHLRGKIGDLRVRRDELKRLHLESSSCHNESSNLC 143
           SLLPLEFIKGRR+RAD+V+EAV YIEHL+GKI +L ++RD LKR++L+S    N  S   
Sbjct: 71  SLLPLEFIKGRRSRADLVNEAVRYIEHLKGKISELHIKRDALKRVYLDSLGYQNNES--- 130

Query: 144 SSSCVVINPYSGGLEIVISSFYREEILQLSEVMRILLEESI------------------- 203
           SSSCVVINPYSGGLEIVIS  +REE L+LS VMR+LL++S                    
Sbjct: 131 SSSCVVINPYSGGLEIVISCCFREEKLKLSGVMRVLLQQSTHVQSCASTKVNGRMFHTIQ 190

Query: 204 -EVDDSRRIDLHELQQKLYQVCNSGSF 206
            +VD SRRID+ ELQ+KLYQVCN GSF
Sbjct: 191 SKVDVSRRIDILELQRKLYQVCNFGSF 208

[Close]

BLAST of Spg002860 vs. ExPASy TrEMBL
Match: A0A0A0L9L0 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G178580 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 7.7e-51
Identity = 133/229 (58.08%), Postives = 161/229 (70.31%), Query Frame = 0


Query: 1   MFPFNDPS---NDHQTHLQNLFA-PPISASEGSSDFNANKMESTHQKMVSNSETVGEEKR 60
           MFPFND S   +D+Q HLQNLF+   IS+ EG S     + E+ +     +  T  EEK+
Sbjct: 1   MFPFNDSSHDIDDYQIHLQNLFSYQLISSQEGCS-----RTENLNTNSKIDETTQNEEKK 60

Query: 61  IMHRDLERERRKQMASLLTDLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKIGDLRVR 120
           IMHRDLERERRKQM SLLT+LRSLLPLEFIKGRR+R DIVDEAVNYIE+LRG++ +L V+
Sbjct: 61  IMHRDLERERRKQMTSLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGRMNELHVK 120

Query: 121 RDEL-KRLHLE-SSSCHNESSNLCSSSCVVINPYSGGLEIVISS-FYREEILQLSEVMRI 180
           RD + KRLHLE SSSC+N+   + S+SCVVI  YSGGLEIVIS+    E+  QLS VMR+
Sbjct: 121 RDAIVKRLHLESSSSCNND---IPSTSCVVIKQYSGGLEIVISNGIISEQNFQLSGVMRV 180

Query: 181 LLEESIE--------------------VDDSRRIDLHELQQKLYQVCNS 203
           L+E+SIE                    VDD  +IDLHEL+QKLYQVCNS
Sbjct: 181 LIEQSIEIETCSSTKLNERMLHTIQTKVDDPTKIDLHELKQKLYQVCNS 221

[Close]

BLAST of Spg002860 vs. TAIR 10
Match: AT5G51790.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 87.8 bits (216), Expect = 1.1e-17
Identity = 62/171 (36.26%), Postives = 97/171 (56.73%), Query Frame = 0


Query: 35  NKMESTHQK-MVSNSETVGEEKRIMHRDLERERRKQMASLLTDLRSLLPLEFIKGRRTRA 94
           N  ++ HQ  M    +   +EK+++HR++ER+RR++MA L   LRS LPL++IKG+R  +
Sbjct: 6   NPKKTRHQSHMPQERDETKKEKKLLHRNIERQRRQEMAILFASLRSQLPLKYIKGKRAMS 65

Query: 95  DIVDEAVNYIEHLRGKIGDLRVRRDELKRLHLESSSCHNESSNLCSS----SCVVINPYS 154
           D V+ AV++I+  + +I DL  RRDELKR   + +S     S   SS    + V++ P  
Sbjct: 66  DHVNGAVSFIKDTQTRIKDLSARRDELKREIGDPTSLTGSGSGSGSSRSEPASVMVQPCV 125

Query: 155 GGLEIVISSFYRE-EILQLSEVMRILLEESIEVDDSRRIDLHELQQKLYQV 200
            G E+V+SS     E   LS V+ +L  + +EV  S    ++E      QV
Sbjct: 126 SGFEVVVSSLASGLEAWPLSRVLEVLHGQGLEVISSLTARVNERLMYTIQV 176

[Close]

BLAST of Spg002860 vs. TAIR 10
Match: AT4G25410.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 84.7 bits (208), Expect = 9.3e-17
Identity = 57/161 (35.40%), Postives = 94/161 (58.39%), Query Frame = 0


Query: 53  EEKRIMHRDLERERRKQMASLLTDLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKIGD 112
           ++K+++HRD+ER+RR++MA+L   LR+ LPL++IKG+R  +D V+ AVN+I+    +I +
Sbjct: 41  KKKKLLHRDIERQRRQEMATLFATLRTHLPLKYIKGKRAVSDHVNGAVNFIKDTEARIKE 100

Query: 113 LRVRRDELKRLHLESSSCHNESSNLCSS------SCVVINPYSGGLEIVISS-FYREEIL 172
           L  RRDEL R   +    + +     S       + V++ P+  GLE+V+SS     E L
Sbjct: 101 LSARRDELSRETGQGYKSNPDPGKTGSDVGKSEPATVMVQPHVSGLEVVVSSNSSGPEAL 160

Query: 173 QLSEVMRILLEESIEVDDSRRIDLHELQQKLYQVCNSGSFG 207
            LS+V+  + E+ +EV  S    +++      QV    SFG
Sbjct: 161 PLSKVLETIQEKGLEVMSSFTTRVNDRLMHTIQV-EVNSFG 200

[Close]

BLAST of Spg002860 vs. TAIR 10
Match: AT4G25400.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 84.0 bits (206), Expect = 1.6e-16
Identity = 55/129 (42.64%), Postives = 82/129 (63.57%), Query Frame = 0


Query: 55  KRIMHRDLERERRKQMASLLTDLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKIGDLR 114
           ++++H+++E+ RR++MASL   LRSLLPLEFI+G+R+ +D V  AVNYI++L+  I D+ 
Sbjct: 2   EKLVHKEIEKRRRQEMASLYASLRSLLPLEFIQGKRSTSDQVKGAVNYIDYLQRNIKDIN 61

Query: 115 VRRDELKRLHLESSSCHNESSNLCSSSCVVINPYSGGLEIVISSFYREEILQ--LSEVMR 174
            +RD+L  L   S    NE      S+ VVI P   G+EIV+S      ILQ   S V++
Sbjct: 62  SKRDDLVLLSGRSFRSSNEQEWNEISNHVVIRPCLVGIEIVLS------ILQTPFSSVLQ 121

Query: 175 ILLEESIEV 182
           +L E  + V
Sbjct: 122 VLREHGLYV 124

[Close]

BLAST of Spg002860 vs. TAIR 10
Match: AT5G51780.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 82.4 bits (202), Expect = 4.6e-16
Identity = 52/128 (40.62%), Postives = 80/128 (62.50%), Query Frame = 0


Query: 55  KRIMHRDLERERRKQMASLLTDLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKIGDLR 114
           +++MHR+ ER+RR++MASL   LRSLLPL FIKG+R+ +D V+EAVNYI++L+ KI +L 
Sbjct: 2   EKMMHRETERQRRQEMASLYASLRSLLPLHFIKGKRSTSDQVNEAVNYIKYLQRKIKELS 61

Query: 115 VRRDEL------KRLHLESSSCHNESSNLCSSSCVVINPYSGGLEIVISSFYREEILQLS 174
           VRRD+L        L   +     +   +   + VV+     G+EI++SS       + S
Sbjct: 62  VRRDDLMVLSRGSLLGSSNGDFKEDVEMISGKNHVVVRQCLVGVEIMLSSRCCGGQPRFS 121

Query: 175 EVMRILLE 177
            V+++L E
Sbjct: 122 SVLQVLSE 129

[Close]

BLAST of Spg002860 vs. TAIR 10
Match: AT1G12540.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 79.3 bits (194), Expect = 3.9e-15
Identity = 63/167 (37.72%), Postives = 92/167 (55.09%), Query Frame = 0


Query: 22  PISASEGSSDFNANKMESTHQ-KMVSNSETVGEEKRIMHRDLERERRKQMASLLTDLRSL 81
           P+  S G  +      E+T     +   +   + KR  H++LER+RR++  SL   LR L
Sbjct: 41  PVIHSAGIENDGRQNCETTMTLSEIMKGDDEPKNKRAKHKELERQRRQENTSLFKILRYL 100

Query: 82  LPLEFIKGRRTRADIVDEAVNYIEHLRGKIGDLRVRRDELKRLHLESSSCHNES-SNLCS 141
           LP ++IKG+R+ AD V EAVNYI+ L+ KI ++  +RD +KR     SS    S  +L S
Sbjct: 101 LPSQYIKGKRSSADHVLEAVNYIKDLQKKIKEVSEKRDRIKRSITHPSSRGEFSIRSLAS 160

Query: 142 SSC---------VVINPYSGGLEIVISSFYREEILQLSEVMRILLEE 178
           S+C         VV+ P   GLEIV+S   R E   LS V+++L +E
Sbjct: 161 STCSCVGDTNIAVVVRPCLIGLEIVVSCCNRHESC-LSSVLQLLAQE 206

The following BLAST results are available for this feature:

BLAST of Spg002860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022984444.1	2.7e-58	60.79	transcription factor bHLH118-like [Cucurbita maxima]	[more]
XP_038877683.1	1.0e-57	62.88	transcription factor bHLH118-like [Benincasa hispida]	[more]
XP_022923000.1	2.5e-56	59.91	transcription factor bHLH118-like [Cucurbita moschata]	[more]
KAG6576761.1	3.3e-56	59.91	Transcription factor basic helix-loop-helix 118, partial [Cucurbita argyrosperma...	[more]
XP_008439139.1	3.8e-52	59.83	PREDICTED: transcription factor bHLH36-like [Cucumis melo] >XP_008439141.1 PREDI...	[more]

BLAST of Spg002860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FLI0	1.6e-16	36.26	Transcription factor bHLH120 OS=Arabidopsis thaliana OX=3702 GN=BHLH120 PE=2 SV=...	[more]
Q9STJ6	1.3e-15	35.40	Transcription factor bHLH126 OS=Arabidopsis thaliana OX=3702 GN=BHLH126 PE=2 SV=...	[more]
Q9STJ7	2.2e-15	42.64	Transcription factor bHLH118 OS=Arabidopsis thaliana OX=3702 GN=BHLH118 PE=2 SV=...	[more]
Q9FLI1	6.5e-15	40.63	Transcription factor bHLH36 OS=Arabidopsis thaliana OX=3702 GN=BHLH36 PE=2 SV=1	[more]
Q9LN95	5.5e-14	37.72	Transcription factor bHLH55 OS=Arabidopsis thaliana OX=3702 GN=BHLH55 PE=2 SV=1	[more]

BLAST of Spg002860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JAJ0	1.3e-58	60.79	transcription factor bHLH118-like OS=Cucurbita maxima OX=3661 GN=LOC111482745 PE...	[more]
A0A6J1EAE1	1.2e-56	59.91	transcription factor bHLH118-like OS=Cucurbita moschata OX=3662 GN=LOC111430817 ...	[more]
A0A1S3AY11	1.8e-52	59.83	transcription factor bHLH36-like OS=Cucumis melo OX=3656 GN=LOC103484025 PE=4 SV...	[more]
A0A6J1CHG5	4.5e-51	61.35	transcription factor bHLH36-like OS=Momordica charantia OX=3673 GN=LOC111011678 ...	[more]
A0A0A0L9L0	7.7e-51	58.08	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G178580 PE=4 S...	[more]

BLAST of Spg002860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51790.1	1.1e-17	36.26	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G25410.1	9.3e-17	35.40	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G25400.1	1.6e-16	42.64	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G51780.1	4.6e-16	40.63	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G12540.1	3.9e-15	37.72	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 103..123
None	No IPR available	PANTHER	PTHR13935:SF106	TRANSCRIPTION FACTOR BHLH120-RELATED	coord: 39..181
None	No IPR available	CDD	cd18914	bHLH_AtORG2_like	coord: 55..123 e-value: 1.08862E-23 score: 87.7439
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 60..112 e-value: 7.1E-8 score: 42.2
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 55..107 e-value: 8.8E-11 score: 41.7
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 54..106 score: 14.125597
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 45..136 e-value: 3.4E-11 score: 45.0
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 52..133
IPR015660	Achaete-scute transcription factor-related	PANTHER	PTHR13935	ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED	coord: 39..181

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg002860.1	Spg002860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0090575	RNA polymerase II transcription regulator complex
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity