Spg002810 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg002810
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	arabinogalactan peptide 22-like
Location	scaffold6: 909148 .. 909920 (+)
RNA-Seq Expression	Spg002810
Synteny	Spg002810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCAATTTTCTTCTTGTTCTTTGTTCTTGTTCTTCTGTCTCTCTCTAGGTTCCTTTGAGGGAGAAAGGGCATTGGATTGAATAAACGCCAAAGGCAGAGAGAGACAGAGAGAGACAGAGATGGCTGTTTTGAGGGCTTGTTTTGGAATCTATGCTGTGATTATTGCTATCTTTTGTGTTGTGATTTTGCCTGTATCTGCAGCTGAACAATCCTCTTCTCCAGCTCCGGCTCCCACTAGTGATGGTTAGTTCTCTTTTCTTTCTGGTTTTTTTTCTGTTTGTTTCTTGAGAAATTTGCTGGGAAAATGACTGGAAACCCAAAAAAGGCTTTGGAATGAACTCTTCTCTTCAAATTCCAGGTTCTAAGCAGCACCAATTCAATTGATTCTCCTTGAACTCGAAATGGGTTTTGGGAAATTTGGCTCCTTGTTTGAATTGAAACAAAATCTACTCTTTTTCTCCCTCAAGAAGCTGCCTTTTTTAGACATTTTCTGTTTGTTTCTTGAGAAATTTGCTGGGGCAATGACAGGAAATCTGAGAATGGTTTTGAAATCAACATTTTCAAAGCAGCATCAAAATCTACTCTCATTTTCTTCCTCAAGAAGAAGAAGCTACCATTTTTAGACATTTTCTTAAAGAAACCTTGGCTTATAATGGTGCAGAACTCCAAAATAACATTTGCCATTTCATATGTTGCAGGAACCACAATAGACCAAGGCATAGCATACATTCTAATGCTGCTGGCTTTAGTGCTCACTTATATCATCCATTGA

mRNA sequence

ATGGCTGTTTTGAGGGCTTGTTTTGGAATCTATGCTGTGATTATTGCTATCTTTTGTGTTGTGATTTTGCCTGTATCTGCAGCTGAACAATCCTCTTCTCCAGCTCCGGCTCCCACTAGTGATGAAATTTGCTGGGGCAATGACAGGAAATCTGAGAATGGTTTTGAAATCAACATTTTCAAAGCAGCATCAAAATCTACTCTCATTTTCTTCCTCAAGAAGAAGAAGCTACCATTTTTAGACATTTTCTTAAAGAAACCTTGGCTTATAATGGTGCAGAACTCCAAAATAACATTTGCCATTTCATATGTTGCAGGAACCACAATAGACCAAGGCATAGCATACATTCTAATGCTGCTGGCTTTAGTGCTCACTTATATCATCCATTGA

Coding sequence (CDS)

ATGGCTGTTTTGAGGGCTTGTTTTGGAATCTATGCTGTGATTATTGCTATCTTTTGTGTTGTGATTTTGCCTGTATCTGCAGCTGAACAATCCTCTTCTCCAGCTCCGGCTCCCACTAGTGATGAAATTTGCTGGGGCAATGACAGGAAATCTGAGAATGGTTTTGAAATCAACATTTTCAAAGCAGCATCAAAATCTACTCTCATTTTCTTCCTCAAGAAGAAGAAGCTACCATTTTTAGACATTTTCTTAAAGAAACCTTGGCTTATAATGGTGCAGAACTCCAAAATAACATTTGCCATTTCATATGTTGCAGGAACCACAATAGACCAAGGCATAGCATACATTCTAATGCTGCTGGCTTTAGTGCTCACTTATATCATCCATTGA

Protein sequence

MAVLRACFGIYAVIIAIFCVVILPVSAAEQSSSPAPAPTSDEICWGNDRKSENGFEINIFKAASKSTLIFFLKKKKLPFLDIFLKKPWLIMVQNSKITFAISYVAGTTIDQGIAYILMLLALVLTYIIH

Homology

[Close]

BLAST of Spg002810 vs. NCBI nr
Match: XP_022945187.1 (arabinogalactan peptide 22-like [Cucurbita moschata] >XP_023541894.1 arabinogalactan peptide 22-like [Cucurbita pepo subsp. pepo] >KAG7013292.1 Arabinogalactan peptide 22 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-09
Identity = 58/129 (44.96%), Postives = 60/129 (46.51%), Query Frame = 0


Query: 1   MAVLRACFGIYAVIIAIFCVVILPVSAAEQSSSPAPAPTSDEICWGNDRKSENGFEINIF 60
           MAVLRACFGIYAVIIAIF VV+LPVS AE +SSPAPAPTSD                   
Sbjct: 1   MAVLRACFGIYAVIIAIFYVVMLPVSRAEHASSPAPAPTSD------------------- 60

Query: 61  KAASKSTLIFFLKKKKLPFLDIFLKKPWLIMVQNSKITFAISYVAGTTIDQGIAYILMLL 120
                                                        GT IDQGIAYILMLL
Sbjct: 61  ---------------------------------------------GTAIDQGIAYILMLL 65

Query: 121 ALVLTYIIH 130
           AL LTYIIH
Sbjct: 121 ALALTYIIH 65

[Close]

BLAST of Spg002810 vs. NCBI nr
Match: XP_038898060.1 (arabinogalactan protein 41-like [Benincasa hispida] >XP_038898069.1 arabinogalactan protein 41-like [Benincasa hispida])

HSP 1 Score: 70.9 bits (172), Expect = 9.3e-09
Identity = 58/130 (44.62%), Postives = 62/130 (47.69%), Query Frame = 0


Query: 1   MAVLRACFGIY-AVIIAIFCVVILPVSAAEQSSSPAPAPTSDEICWGNDRKSENGFEINI 60
           MAVL+ACFGIY AVIIA+F VV LPVSAAE SSSPAPAPTSD                  
Sbjct: 1   MAVLKACFGIYAAVIIAVFYVVTLPVSAAEFSSSPAPAPTSD------------------ 60

Query: 61  FKAASKSTLIFFLKKKKLPFLDIFLKKPWLIMVQNSKITFAISYVAGTTIDQGIAYILML 120
                                                         GTTIDQGIAY+LML
Sbjct: 61  ----------------------------------------------GTTIDQGIAYVLML 66

Query: 121 LALVLTYIIH 130
           +ALVLTYIIH
Sbjct: 121 VALVLTYIIH 66

[Close]

BLAST of Spg002810 vs. NCBI nr
Match: XP_022140891.1 (arabinogalactan peptide 22-like [Momordica charantia])

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-08
Identity = 57/129 (44.19%), Postives = 59/129 (45.74%), Query Frame = 0


Query: 1   MAVLRACFGIYAVIIAIFCVVILPVSAAEQSSSPAPAPTSDEICWGNDRKSENGFEINIF 60
           MAV RACFGIYA IIAI  V+ILPVS AE SSSPAPAP+SD                   
Sbjct: 1   MAVSRACFGIYAGIIAILFVIILPVSRAEHSSSPAPAPSSD------------------- 60

Query: 61  KAASKSTLIFFLKKKKLPFLDIFLKKPWLIMVQNSKITFAISYVAGTTIDQGIAYILMLL 120
                                                        GTTIDQGIAYILMLL
Sbjct: 61  ---------------------------------------------GTTIDQGIAYILMLL 65

Query: 121 ALVLTYIIH 130
           ALVLTYIIH
Sbjct: 121 ALVLTYIIH 65

[Close]

BLAST of Spg002810 vs. NCBI nr
Match: XP_022968217.1 (arabinogalactan peptide 22-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-07
Identity = 56/131 (42.75%), Postives = 59/131 (45.04%), Query Frame = 0


Query: 1   MAVLRACFGIYAVIIAIFCVVILPVSAAEQSSS--PAPAPTSDEICWGNDRKSENGFEIN 60
           MA LRACFG+YAVIIAIF VV+LPVS AE +SS  PAPAPTSD                 
Sbjct: 21  MAALRACFGLYAVIIAIFYVVMLPVSRAEHASSPAPAPAPTSD----------------- 80

Query: 61  IFKAASKSTLIFFLKKKKLPFLDIFLKKPWLIMVQNSKITFAISYVAGTTIDQGIAYILM 120
                                                          GT IDQGIAYILM
Sbjct: 81  -----------------------------------------------GTAIDQGIAYILM 87

Query: 121 LLALVLTYIIH 130
           LLAL LTYIIH
Sbjct: 141 LLALALTYIIH 87

[Close]

BLAST of Spg002810 vs. NCBI nr
Match: XP_022968216.1 (arabinogalactan peptide 22-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-07
Identity = 56/131 (42.75%), Postives = 59/131 (45.04%), Query Frame = 0


Query: 1   MAVLRACFGIYAVIIAIFCVVILPVSAAEQSSS--PAPAPTSDEICWGNDRKSENGFEIN 60
           MA LRACFG+YAVIIAIF VV+LPVS AE +SS  PAPAPTSD                 
Sbjct: 26  MAALRACFGLYAVIIAIFYVVMLPVSRAEHASSPAPAPAPTSD----------------- 85

Query: 61  IFKAASKSTLIFFLKKKKLPFLDIFLKKPWLIMVQNSKITFAISYVAGTTIDQGIAYILM 120
                                                          GT IDQGIAYILM
Sbjct: 86  -----------------------------------------------GTAIDQGIAYILM 92

Query: 121 LLALVLTYIIH 130
           LLAL LTYIIH
Sbjct: 146 LLALALTYIIH 92

[Close]

BLAST of Spg002810 vs. ExPASy TrEMBL
Match: A0A6J1G081 (arabinogalactan peptide 22-like OS=Cucurbita moschata OX=3662 GN=LOC111449506 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 5.3e-10
Identity = 58/129 (44.96%), Postives = 60/129 (46.51%), Query Frame = 0


Query: 1   MAVLRACFGIYAVIIAIFCVVILPVSAAEQSSSPAPAPTSDEICWGNDRKSENGFEINIF 60
           MAVLRACFGIYAVIIAIF VV+LPVS AE +SSPAPAPTSD                   
Sbjct: 1   MAVLRACFGIYAVIIAIFYVVMLPVSRAEHASSPAPAPTSD------------------- 60

Query: 61  KAASKSTLIFFLKKKKLPFLDIFLKKPWLIMVQNSKITFAISYVAGTTIDQGIAYILMLL 120
                                                        GT IDQGIAYILMLL
Sbjct: 61  ---------------------------------------------GTAIDQGIAYILMLL 65

Query: 121 ALVLTYIIH 130
           AL LTYIIH
Sbjct: 121 ALALTYIIH 65

[Close]

BLAST of Spg002810 vs. ExPASy TrEMBL
Match: A0A6J1CHE0 (arabinogalactan peptide 22-like OS=Momordica charantia OX=3673 GN=LOC111011447 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.9e-09
Identity = 57/129 (44.19%), Postives = 59/129 (45.74%), Query Frame = 0


Query: 1   MAVLRACFGIYAVIIAIFCVVILPVSAAEQSSSPAPAPTSDEICWGNDRKSENGFEINIF 60
           MAV RACFGIYA IIAI  V+ILPVS AE SSSPAPAP+SD                   
Sbjct: 1   MAVSRACFGIYAGIIAILFVIILPVSRAEHSSSPAPAPSSD------------------- 60

Query: 61  KAASKSTLIFFLKKKKLPFLDIFLKKPWLIMVQNSKITFAISYVAGTTIDQGIAYILMLL 120
                                                        GTTIDQGIAYILMLL
Sbjct: 61  ---------------------------------------------GTTIDQGIAYILMLL 65

Query: 121 ALVLTYIIH 130
           ALVLTYIIH
Sbjct: 121 ALVLTYIIH 65

[Close]

BLAST of Spg002810 vs. ExPASy TrEMBL
Match: A0A6J1HT15 (arabinogalactan peptide 22-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467520 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 8.5e-08
Identity = 56/131 (42.75%), Postives = 59/131 (45.04%), Query Frame = 0


Query: 1   MAVLRACFGIYAVIIAIFCVVILPVSAAEQSSS--PAPAPTSDEICWGNDRKSENGFEIN 60
           MA LRACFG+YAVIIAIF VV+LPVS AE +SS  PAPAPTSD                 
Sbjct: 21  MAALRACFGLYAVIIAIFYVVMLPVSRAEHASSPAPAPAPTSD----------------- 80

Query: 61  IFKAASKSTLIFFLKKKKLPFLDIFLKKPWLIMVQNSKITFAISYVAGTTIDQGIAYILM 120
                                                          GT IDQGIAYILM
Sbjct: 81  -----------------------------------------------GTAIDQGIAYILM 87

Query: 121 LLALVLTYIIH 130
           LLAL LTYIIH
Sbjct: 141 LLALALTYIIH 87

[Close]

BLAST of Spg002810 vs. ExPASy TrEMBL
Match: A0A6J1HU96 (arabinogalactan peptide 22-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467520 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 8.5e-08
Identity = 56/131 (42.75%), Postives = 59/131 (45.04%), Query Frame = 0


Query: 1   MAVLRACFGIYAVIIAIFCVVILPVSAAEQSSS--PAPAPTSDEICWGNDRKSENGFEIN 60
           MA LRACFG+YAVIIAIF VV+LPVS AE +SS  PAPAPTSD                 
Sbjct: 26  MAALRACFGLYAVIIAIFYVVMLPVSRAEHASSPAPAPAPTSD----------------- 85

Query: 61  IFKAASKSTLIFFLKKKKLPFLDIFLKKPWLIMVQNSKITFAISYVAGTTIDQGIAYILM 120
                                                          GT IDQGIAYILM
Sbjct: 86  -----------------------------------------------GTAIDQGIAYILM 92

Query: 121 LLALVLTYIIH 130
           LLAL LTYIIH
Sbjct: 146 LLALALTYIIH 92

[Close]

BLAST of Spg002810 vs. ExPASy TrEMBL
Match: A0A5D3BTZ5 (Arabinogalactan peptide 22 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11G00180 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.2e-07
Identity = 56/131 (42.75%), Postives = 62/131 (47.33%), Query Frame = 0


Query: 1   MAVLRA-CFGIY-AVIIAIFCVVILPVSAAEQSSSPAPAPTSDEICWGNDRKSENGFEIN 60
           MAVLRA CFGIY AV+IA+F V+ LPVS+AE SSSPAPAPTSD                 
Sbjct: 1   MAVLRASCFGIYAAVLIAVFYVLALPVSSAELSSSPAPAPTSD----------------- 60

Query: 61  IFKAASKSTLIFFLKKKKLPFLDIFLKKPWLIMVQNSKITFAISYVAGTTIDQGIAYILM 120
                                                          GTTIDQGIAY+LM
Sbjct: 61  -----------------------------------------------GTTIDQGIAYVLM 67

Query: 121 LLALVLTYIIH 130
           L+ALVLTYIIH
Sbjct: 121 LVALVLTYIIH 67

The following BLAST results are available for this feature:

BLAST of Spg002810 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945187.1	1.1e-09	44.96	arabinogalactan peptide 22-like [Cucurbita moschata] >XP_023541894.1 arabinogala...	[more]
XP_038898060.1	9.3e-09	44.62	arabinogalactan protein 41-like [Benincasa hispida] >XP_038898069.1 arabinogalac...	[more]
XP_022140891.1	1.2e-08	44.19	arabinogalactan peptide 22-like [Momordica charantia]	[more]
XP_022968217.1	1.8e-07	42.75	arabinogalactan peptide 22-like isoform X2 [Cucurbita maxima]	[more]
XP_022968216.1	1.8e-07	42.75	arabinogalactan peptide 22-like isoform X1 [Cucurbita maxima]	[more]

BLAST of Spg002810 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg002810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G081	5.3e-10	44.96	arabinogalactan peptide 22-like OS=Cucurbita moschata OX=3662 GN=LOC111449506 PE...	[more]
A0A6J1CHE0	5.9e-09	44.19	arabinogalactan peptide 22-like OS=Momordica charantia OX=3673 GN=LOC111011447 P...	[more]
A0A6J1HT15	8.5e-08	42.75	arabinogalactan peptide 22-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1HU96	8.5e-08	42.75	arabinogalactan peptide 22-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A5D3BTZ5	3.2e-07	42.75	Arabinogalactan peptide 22 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]

BLAST of Spg002810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009424	Arabinogalactan protein 16/20/22/41	PFAM	PF06376	AGP	coord: 106..129 e-value: 6.4E-12 score: 45.1
IPR009424	Arabinogalactan protein 16/20/22/41	PANTHER	PTHR33374	ARABINOGALACTAN PROTEIN 20	coord: 1..41 coord: 106..129
None	No IPR available	PANTHER	PTHR33374:SF38	ARABINOGALACTAN PROTEIN 41	coord: 1..41 coord: 106..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg002810.1	Spg002810.1	mRNA