Spg002753 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg002753
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold6: 2380550 .. 2383166 (+)
RNA-Seq ExpressionSpg002753
SyntenySpg002753
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTTTGATGGAGGAATTGATGTTTGGCGTTCTGCCGAAGCCAAAACCAGTGGTAAGTCGCCGACCCAACATGCGAGACAAAAGTCTTCTTGATTCCCTATTTTTCAATTTTCTTTTTCTTTTTACATTGAAAGTGGAGCCTTCCCCACAGGTTATATATATACTAATGTATCACCAAAATTTCGGTAAACCCACTCAAGTTTTGAGCTTTTCTGCAACCAGAAATTAATGGCTTCCCCAACAACTTTAGTTCCTTGGAAGACGAACGTGGTCTTCTTCACTTTGCTTCTTCTTGTTGCTTTCAACGTTTCTGCAAGGGAACTTGTTGAGACCAATATTGTTCTGGGTCGCTCAGTCCGTAAGTCCTCTCTTTTCCATAATGCCTCATCTAACAATAACATTGTTTTTCACAAATCTCATATTACCATTTTTTTTTTCTTTTCCGATAGGTGAGAGAGCGATTGAGATGAATGAGGTGATGGGTAGGAAATTAATTGCTCGACAATTGGATATCTCTTGGAGAGGAAATTATTCTCCTCCTCCTCTTTATCCTCCTCATCCCCTTCCTCCTCGTTATTCTCCTCCTCCTCCTCGATATCATCCTCGTTATCGGCCTCGTCCTCGTCTTCTTCCTCCTCCTCCCTACTAGTCCTAAGGGTGAAGACTTGAATATTTGTGTATTTTGTCTTTAATTACCTTTCATGTTCTATGAACTTTTTCTTTCAAATTTGTGGTCTTTAATTGTGTCTCCCTACTAGTCCTAAGGGTGAAGACTTGAATATATTTGTGTATTTTATCTTTAATTATCTTTCATTTTGTATGAACTTTATTTCTTTCAAATTTGTGGTCTTTAATGGTGTTGTGTGATTTTGGTGGATCCATAGGTGTAGGGGTTTATGAAATTAATTACCATTACGCTTTGACGATGTTAATTCAATTATTAGTTTAATTGGGTTTCGATATAATAACCGACGTATACTTATGTCAAGACAATGTGTACCATATGTGTTCGTATCTAACCTTTTTGCTGCTATCTTCTGGAGCCTTTGGATTGAAAGAAACGATCGTATTTTCCGAGTTAAAGCCCTTTGGATTTCAAATTATATGGGAGGATGTTTTGTCTTTGGCTGCTCTTTGGACTTCCGTTTCTAGCGTCTTCTCCAATTATGGTGTTGCTGATATTGCTCTTAATTAGAAGGCGTTCTTCTAGCGTTGTATGTTTCTCACATACGCTTCAATAAAGTATCCTCTTTCTAAAAAGAAAAAAAGTCAACTCCTAATAATTGGTGTGAAATTATGTTTGCATCATAAAAAAATCTCTGCTCAAATGAAGAACTACTTCAAATTAGACACCCATGCCCATTATAATTTAGGCACATTGAGAGAGTTTGTTTTTGTCATTGGTCAACTCTTCCTCTCTTAGAAGCTCACCATTTATCTTGTTATGGCTCAACCATGGTTATTTTTATGAAAGTTGATGCCCACTATGCTTTTGTTGCTACCTTCTTCCCAACACCCTTTTAATTTCATCCATCTTTTTATCATAGCACGGGATAGAGATCTAAAGAAACTATGTTGTTGAGATAAACAAGGTCTCACGCCATGTTTTTAGTTGACGACTCAAGATTCCATATTTATACAACTACATTTAGGGCATGACTTTAGTATTATTGGCCTTACTTTTATAGTTCATCATATCTTTTTCATGTTTTAATTGATCGCGATACTTTGCTGTACGTTATAAATTAAACAAGAGAAACTCTTGCAAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTTCCTATCCTTTTTAAAATTTTTTTTTTTTTTGTAGAGATATCTCGTTTGAATTTTATTTTTGTAGCAATTTACAACATTATTGTGAAGCTCATGGTAAATGAAAATAAATTAAGTGGTTTATGTAATTTGAGTTTTAGTGGAATAAGAATTTAGTCGCTAAAACAAGAAACCCTATCCACTAAACATATAAAAAAATGAAGACATATGAACCAAAATGATACGAATAAAAAAGTTTAGAAATCTAAGATTGAATTTTATACATACATACATAAATCTATAATATGAGGGGGAGGAGATAAACTTGAATTAGGAGATTTCTATTGATGAATGAGAATCCCTATATTTCAGAGTTTAATTAATTAGCAAACCCAACCCTTATTTAAAGAAACAAAAAACCAATCCTTACTCATTTTGATGGCTTTAGTTCTTGATTTTTCTATATCAAGTAGCTGCTATAAAGTCTTAATTATTGAAGACTTGCCATAAGAAAAACAATATTTTTGGAATAAGTTTCAACCTCTCACATGGGTTTAGATCTGTTAACTTCTACTTGTTTAATTCAATGTGAATAAAGAAGTTCAAACAAAGATCAGTATTGGGACAAGTTCCAACCTGTCCCACATTACCAGAAATTGCAGCTATAACTTCTTTATGTAATGCAATGGAACATGGATTCATCGCTGAGCTTGGTAAGATGTCAACTGGACTGGGCCTCTGGCAAGATGTCAACTGGGCTGCCCAATCCAAGGGCCGACTTGGGCCTTGTGTTCTGGGCGTAAGCCCAGTGTACTCCGCCTTTTGA

mRNA sequence

ATGGAGGAATTGATGTTTGGCGTTCTGCCGAAGCCAAAACCAGTGAAATTAATGGCTTCCCCAACAACTTTAGTTCCTTGGAAGACGAACGTGGTCTTCTTCACTTTGCTTCTTCTTGTTGCTTTCAACGTTTCTGCAAGGGAACTTGTTGAGACCAATATTGTTCTGGGTCGCTCAGTCCGTGAGAGAGCGATTGAGATGAATGAGGTGATGGGTAGGAAATTAATTGCTCGACAATTGGATATCTCTTGGAGAGGAAATTATTCTCCTCCTCCTCTTTATCCTCCTCATCCCCTTCCTCCTCGTTATTCTCCTCCTCCTCCTCGATATCATCCTCGTTATCGGCCTCGTCCTCCGTCTTCTCCAATTATGGTGTTGCTGATATTGCTCTTAATTAGAAGGCGTTCTTCTAGCGTTAAGTTCAAACAAAGATCAGTATTGGGACAAGTTCCAACCTGTCCCACATTACCAGAAATTGCAGCTATAACTTCTTTATGTAATGCAATGGAACATGGATTCATCGCTGAGCTTGGTAAGATGTCAACTGGACTGGGCCTCTGGCAAGATGTCAACTGGGCTGCCCAATCCAAGGGCCGACTTGGGCCTTGTGTTCTGGGCGTAAGCCCAGTGTACTCCGCCTTTTGA

Coding sequence (CDS)

ATGGAGGAATTGATGTTTGGCGTTCTGCCGAAGCCAAAACCAGTGAAATTAATGGCTTCCCCAACAACTTTAGTTCCTTGGAAGACGAACGTGGTCTTCTTCACTTTGCTTCTTCTTGTTGCTTTCAACGTTTCTGCAAGGGAACTTGTTGAGACCAATATTGTTCTGGGTCGCTCAGTCCGTGAGAGAGCGATTGAGATGAATGAGGTGATGGGTAGGAAATTAATTGCTCGACAATTGGATATCTCTTGGAGAGGAAATTATTCTCCTCCTCCTCTTTATCCTCCTCATCCCCTTCCTCCTCGTTATTCTCCTCCTCCTCCTCGATATCATCCTCGTTATCGGCCTCGTCCTCCGTCTTCTCCAATTATGGTGTTGCTGATATTGCTCTTAATTAGAAGGCGTTCTTCTAGCGTTAAGTTCAAACAAAGATCAGTATTGGGACAAGTTCCAACCTGTCCCACATTACCAGAAATTGCAGCTATAACTTCTTTATGTAATGCAATGGAACATGGATTCATCGCTGAGCTTGGTAAGATGTCAACTGGACTGGGCCTCTGGCAAGATGTCAACTGGGCTGCCCAATCCAAGGGCCGACTTGGGCCTTGTGTTCTGGGCGTAAGCCCAGTGTACTCCGCCTTTTGA

Protein sequence

MEELMFGVLPKPKPVKLMASPTTLVPWKTNVVFFTLLLLVAFNVSARELVETNIVLGRSVRERAIEMNEVMGRKLIARQLDISWRGNYSPPPLYPPHPLPPRYSPPPPRYHPRYRPRPPSSPIMVLLILLLIRRRSSSVKFKQRSVLGQVPTCPTLPEIAAITSLCNAMEHGFIAELGKMSTGLGLWQDVNWAAQSKGRLGPCVLGVSPVYSAF
Homology
[Close]
BLAST of Spg002753 vs. NCBI nr
Match: KAG6600178.1 (hypothetical protein SDJN03_05411, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.1 bits (240), Expect = 2.0e-16
Identity = 69/106 (65.09%), Postives = 74/106 (69.81%), Query Frame = 0 

Query: 18  MASPTTLVPWKTNVVFFTLLLLVAFNVSARELVETNIVLGRSVRERAIEMNEVMGRKLIA 77
           MASP+  VPWK  VVFF LLLL AFNVSARELV TNIV  R+V E  IE N  +GR+LIA
Sbjct: 1   MASPSAFVPWK-EVVFFALLLL-AFNVSARELVGTNIV-ARTVHEMTIETN--VGRRLIA 60

Query: 78  RQLDISWRGNYSPPPLYPPHPLPP--RYSPPP--PRYHPRYRPRPP 120
           RQLD SW GNYSPPP   P P PP  RY+P P  PR  P  RP PP
Sbjct: 61  RQLDTSWGGNYSPPPPRRPPPPPPPCRYTPRPSLPRSRPGSRPLPP 101

[Close]
BLAST of Spg002753 vs. NCBI nr
Match: KAG7030841.1 (hypothetical protein SDJN02_04878 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.0 bits (232), Expect = 1.7e-15
Identity = 68/105 (64.76%), Postives = 73/105 (69.52%), Query Frame = 0 

Query: 18  MASPTTLVPWKTNVVFFTLLLLVAFNVSARELVETNIVLGRSVRERAIEMNEVMGRKLIA 77
           MASP+  VPWK  VVFF LLLL AFNVSARELV TNIV  R+V E  IE N  +GR+LIA
Sbjct: 1   MASPSAFVPWK-EVVFFALLLL-AFNVSARELVGTNIV-ARTVHEMTIETN--VGRRLIA 60

Query: 78  RQLDISWRGNYS-PPPLYPPHPLPPRYSPPP--PRYHPRYRPRPP 120
           RQLD SW GNYS PPP   P P P RY+P P  PR  P  RP PP
Sbjct: 61  RQLDTSWGGNYSPPPPRRRPPPPPCRYTPRPSLPRSRPGSRPLPP 100

[Close]
BLAST of Spg002753 vs. NCBI nr
Match: KAG6576804.1 (hypothetical protein SDJN03_24378, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-08
Identity = 50/92 (54.35%), Postives = 58/92 (63.04%), Query Frame = 0 

Query: 18  MASPTTLVPWKTNVVFFTLLLLVAFNVSARELVETNIVLGRSVRERAIEMNEVM-GRKLI 77
           MASPT LV WK   V F   LL+A +VSAREL   N+V  R+ RE A   N V+ G +LI
Sbjct: 1   MASPTALVAWKK--VAFLGFLLIAVSVSARELAGANVVT-RTAREMATMPNGVIGGSRLI 60

Query: 78  ARQLDISWRGNYSPPPLYPPHPLPPRYSPPPP 109
           ARQLD +WRG+YSPP        PPR  PPPP
Sbjct: 61  ARQLDTAWRGHYSPP--------PPRSPPPPP 81

[Close]
BLAST of Spg002753 vs. NCBI nr
Match: KAG7014831.1 (hypothetical protein SDJN02_22460, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-08
Identity = 50/92 (54.35%), Postives = 58/92 (63.04%), Query Frame = 0 

Query: 18  MASPTTLVPWKTNVVFFTLLLLVAFNVSARELVETNIVLGRSVRERAIEMNEV-MGRKLI 77
           MASPT LV WK   V F   LL+A +VSAREL   N+V  R+ RE A   N V +G +LI
Sbjct: 1   MASPTALVAWKK--VAFLGFLLIAVSVSARELAGANVVT-RTAREMATMPNGVIVGSRLI 60

Query: 78  ARQLDISWRGNYSPPPLYPPHPLPPRYSPPPP 109
           ARQLD +WRG+YSPP        PPR  PPPP
Sbjct: 61  ARQLDTAWRGHYSPP--------PPRSPPPPP 81

[Close]
BLAST of Spg002753 vs. NCBI nr
Match: XP_038907057.1 (uncharacterized protein LOC120092883 [Benincasa hispida])

HSP 1 Score: 69.3 bits (168), Expect = 4.5e-08
Identity = 51/106 (48.11%), Postives = 64/106 (60.38%), Query Frame = 0 

Query: 17  LMASPTTLVPWKTNVVFFTLLLLVAFNVSARELVETNIVLGRSVRERAIEMNEVMGRKLI 76
           ++++  TL+     +VFF+LLLL AFN     L    +V+ +          ++MGR+LI
Sbjct: 22  VLSTTRTLMATPRFLVFFSLLLL-AFNFQTHVLAAREMVMEKD--------GKIMGRRLI 81

Query: 77  ARQLDISWRGNYSPPPLYPPHPLPPRYSPPPPRYHPRYRPRPPSSP 123
           ARQLDISWRGNYSPPP   P PLPP   PPPP Y PR R R  S P
Sbjct: 82  ARQLDISWRGNYSPPPPIHP-PLPP---PPPPPYCPRSRSRSRSRP 114

[Close]
BLAST of Spg002753 vs. ExPASy TrEMBL
Match: A0A0A0L5K7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175610 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.9e-08
Identity = 40/73 (54.79%), Postives = 50/73 (68.49%), Query Frame = 0 

Query: 25 VPWKTNVVFFTLLLLVAFNVSARELVETNIVLGRSVRERAI--EMNEVMGRKLIARQLDI 84
          V WK  ++FFTLLLL A+N+SARELV       R+  E ++  EMN+V+ R+L  RQLD 
Sbjct: 9  VAWKKVIIFFTLLLL-AYNISARELV------ARTTCEPSLTTEMNDVIDRRLFVRQLDT 68

Query: 85 SWRGNYSPPPLYP 96
          SWRGNY PPP  P
Sbjct: 69 SWRGNYFPPPKPP 74

[Close]
BLAST of Spg002753 vs. ExPASy TrEMBL
Match: A0A0A0LB11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175620 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.4e-07
Identity = 48/89 (53.93%), Postives = 52/89 (58.43%), Query Frame = 0 

Query: 31  VVFFTLLLLVAFNVSARELVETNIVLGRSVRER-AIEMNEVMGRKLIARQLDISWRGNYS 90
           +VFF+LLLL AFN S         VL R  RE  A+E N  MGRKL ARQLD SW+GNYS
Sbjct: 7   LVFFSLLLL-AFNFSTG-------VLARPAREMVAVETNWEMGRKLTARQLDTSWKGNYS 66

Query: 91  PPPLYPPHPLPPRYSPPPPRYHPRYRPRP 119
           PP        PP   PPPP Y    RPRP
Sbjct: 67  PP--------PPNRPPPPPPYRQLPRPRP 79

The following BLAST results are available for this feature:
BLAST of Spg002753 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6600178.12.0e-1665.09hypothetical protein SDJN03_05411, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7030841.11.7e-1564.76hypothetical protein SDJN02_04878 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6576804.11.5e-0854.35hypothetical protein SDJN03_24378, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7014831.11.5e-0854.35hypothetical protein SDJN02_22460, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_038907057.14.5e-0848.11uncharacterized protein LOC120092883 [Benincasa hispida][more]
BLAST of Spg002753 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg002753 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5K74.9e-0854.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175610 PE=4 SV=1[more]
A0A0A0LB115.4e-0753.93Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175620 PE=4 SV=1[more]
BLAST of Spg002753 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg002753.1Spg002753.1mRNA