Spg002741 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg002741
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic
Location	scaffold6: 1711400 .. 1716775 (+)
RNA-Seq Expression	Spg002741
Synteny	Spg002741

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCCCATTGACACTCACAGTATAATTTAGAGAATTTTCTAATGTAATTCGTTTTCTCAATTGGCAAACAAGGAAAGATCATGACCAGCACAATTCTCTCTACCAACCCGTTAATTCGGTTGACATCTACTCCCCGATTTCGCGCTAAAAGTAGGTGGAAGAGTGCAGCAATTTCTGCTCGTCTTGACGATTCTAAGAACTCAGCTAATCAGCAACTCAATCTCTCTGTCCTTCGCTTCACACTCGGTATCTCTGTTTCTCCCTCTCTCTGTAAATGGGTACTTTCTGAAGGAATATGTGAATTTGGGGATTTGGGAAGAATTGAATTTTTATTTGTAAGTGTATCATTTCGTTGTGATATGGGGTTTAGGGATTCCTGGATTGGATGAGTCTTACTTACCCAGATGGATTGGCTATGGATTTGGTTCACTTCTTCTTTTGAATCACTTTGTTGGTTCGAATTCAGCTGCTCCCGTCACCCCAGCACAGTTAGTAAGCAAACACAAATTTCTGGGAACGTCTTTGTTTTATGATTCTTGTTGGATTTTCATTATTTTCTGCTGTTTGATGTGGGTTTTGTTATTTGTAGAGAACTGAGGCTTTAGGCATTTCCTTGGCAGCATTTTCTATTGCACTCCCCTACTTGGGAAAGTTTCTTAAGGTAACGTATTAGATATCACATTATTGTCCTGCTTATATTGTTATTTTTTCATCTTCTTCTTCTACTGGAAAACATCCGTTAAACTCTGTAAGAGTGAAAAAAGGAGGATTAGAGGTGCTTGATACTTCTGGTTTGTGTAGTTCTTAGCACTGCCACAGTGCCATTGTCCGCCAACGCTCAAGTAGGTATTGATGATGGAAAGGTAGTACTCTAAAGAAGAGACTGGGACAGGGAGTAAATATATTTGATGGAAATTGTAAAACGAGAATTACCTATTGAGGGATTGCAGTGGGAATGCTTAGCTACAAAGTTTCCTGTTTTTGTACTTGTGTAGAACTTTTTTTTTTGATATCCGTGAGTGTCCGGGCCAGCTTACGCGCACCTCGACTAATCTCATGGGACAACCGCCTGACTCTACTACATTTCGTTGTCAAGGAAACTCGTAGGATATTAAATCCTAGGTAGGTGGCCATTATGGATTGAACCTATTCCCTCTAAGCCCTTTATTTTTTCTATGGTCCTTATTGACCATTAGGACCAACCCATGATGGTTGTACTTGTGTAGAACTTCAAATGGTGGAGTATATGTGACAGGATTTGTAAACTTAAGGATGATGTCTTTCTAGACCTGGGGTTGGGTGGATGGCCATTGATAATCCTGTCTAAGTTCCTGAACGCCTGTTCAGCCAAATTCTTCTCAAATTCGATTCAGCCTCTCTTGACTTTGAATAGGATTGTCATTCATCAACCCGATAATTATCTAGACATCTCAGTCTTCTTATGATTCTACTTGTAGAGTTCATCTTGGAATCTTCTTGTAGATAGAAGCTCTCTCGTAAATCATCTGTCTTACTTAAATTTCTTCTTCAATATCCTATTCTTGTTACTCCAATTTGGCTTAAATGTCTCCTCAGATCTCTATATCTAGCCTGTTCATCTCTGATAATGACTTATTTGCTTGGACCAGACAACAAAAAAGGAGTCTCACCACCTCCTTACATTATCCTCATTAAGGTTGCCCACATGACCTTCTTTATCAAATAAGAATATAAGATCTTCTCAGATCGTTGATGAGGCCATTGTCACATTTTTGTTCTACATTCTAGCATCTTAGTATTGCATGAATTGCTGACTTGAGTATTTGAGTAACTTCACGAAGGCACCATGTTGAATGTTGATGTCTAGTTGAAGCATTGAGACTTTTTCTCCCTCACAGTTGCTAGAGTCCTGTATTTGATTTTTGATTGGTTGGTTTACATGCCAAACTGTCTTCGTTTAAATAGTAATCAATATATATCCAATCTTATTGACTTTAACACTTGCTTGGCCGTTGCTTACTGCTTAGATAATTGAAATAAGGAAAAGTATCCATCTCTGCTTGCAGGGTGCAGTTCCATCTGGCGAAGCTACCCTCCCTGAAGGTGCTGAGCAAATATTTGTCTTGTCACAAAATGTATCCGATAATGTGAAGGAAGACTTGGCTTGGGCAACATATATCTTGCTGCGCAATACAAACAGTATATCAGTGGTATCTCTCAAACTTTTGTTTTGCTTACATTTTACTTCACAAATATGCAAGCGAACACACTGTATTCAAAACATACCTTTTAGCTTTCCTTGATACTGTCTAAATTTTAATTTTTGAATAATTTGTTTTCTTTGGAATCAGTTAATACAGATTCGAGGGGAGTTATGTGTTCGAGGATACTGGAATAGTCCGAATGATATATCAGGAGCAGATTTACTTGCCTGGTTTGAGGAGCAGCTTCAGAGCATTGGCCTGTCTGCATTGAATGATTCCCTCTATTTTCCTCAGATTTCAGGTATACGATTGCCTTCTTTATAATGTTTCCATGAAGGTCTTTTTCGCTCTCTTGCTGCACATGAAATAATGTCTTAGAAATGAGCCATGACCATACTTAGTAGAGAAAATGTTGTTTTTTCCTTAAAAAATTACTTATGCCGATGAATGGAATAAATAGATATATTATTGAAGATAAATAGTTGTAACTTCGAATTTCTATATTATATTTGAAGTTGAGATTGGCCAACGATAGTATATTTGTACTAGAAGAACGTTAAGGTAGGGGGAGGGCTTAGCATAGGAATTATGTGACGTTAGGATGGAGAGGAGTCCAGTGTGAGATAGGAATATTAGATGTGGGTATCTATTGGAACCTCTACTCCTAAAGGACTCATTGATAATCAACCTCTATCAAAATTTGAAGTAATCTGCAATGTCATATTGGTTTCTTCTCCTTGTGGTGATGAGGTGTTACTCCTGGTTGTTTCTCTGATTAGACATGCACCGATAGTAAAAGTTAAATAAATACTATGATGTTCTATTCAACCTTTCAAGGTTTTCGCAACTTTTTTCAGAATCTGAACTTTGGCAAATGCTGCCCAAGGGCACTCGCTCAGTGTTGGTACAGCCGGTGGTTCAAAATTTAAGGCGAAGTGGCAATGAGATGGAAAAGATTGGAGGATTCATATTGCTGGCTTCAAGTCTAAGTTATGCATTTAGCGATAAAGATAGAGCCTGGATTAAAGCTCTTGCTAGCAAATTTGACGATAGGGACATGCTCTGATATTTGTGGGGAGGTAAGTAATCAATCTTATCTATACTTTTTGGCTATTGATGTGCATTTCTCCGAGGTCATGACAGCATGGTACTGGTACTCCTTTTTTCAGATATAATACAAAATTTACCTTTTTTTAGTTAAACATTAGTTGGGGTTGTGATTTGAACCTTCGACTTCAAGGAAAGGTATAGGTGTCTTAACCACTAAGCCATGCATTGATTGACGTACGGAAATTATTTTTTGATGCAATTGTTATGAGCAAGAGATGGAAAAGAACAGAAATGTGATGTCGTGGATTTACTCAGAAACTTAAAAAGGGATATAATCTCTATTTCAATGCCTTTTCTTTTTTCTTCATTACCTTTGGGCCGATATCTATGAGGAGTGCTTGTAATCTTCTCCAGAATATATTGTTCTATGAACCTGCGTTTTTGCAAATATATATATATATATATATATATATATATATATATATATATATTTACTTTTTTACTTTACAACTTTACTTTATATCTACTGAAGTAAATGCTCGGAATCAAAATTCAGAATATCCTCCACCTATTTGGTACATATTGGCATTTGCGCTTGGACAACCAAATGAATGCTTGTTACGAATTTGTATGGAAGAGATGCCTAGCAGATCTTGGCATGAGAATTTGAACATGTTGCAGCATTGAAGTCTCTCGAAAACCTTGGATTTTTCTGGCCTGGTCTGCTGAACTAAAGTCCTTTTCCTCAAAGGTAAATTGTTGGAATGAAAATGTAAGATTCCATAAGAATCTATATGTTTGCATATGAAGAAAAATGTACATGAAAAAACATATGAAGAAAATGAGGTCACATAAGTATCCTGGTAACCGTTTCTTAGTGGTTCTTTCTTTCTCATTAAACTGGAAAATTAGATTGACATTCCAAAATTAGGATATTAAATCTTATTTGGTGTAGAAGAAATATAGTCACTGAGTTGCCGTAAACTCTCACCGGGTTTGCTGTATTATATCCTGTAATCGAGCAGAAAGTTACGGACATCTATTTAAGTTTGCCACAATTGGGAAGAGAGTGAAAAGGGAAGAAAAATGGGACCGAACCCTTCTGTAAGAACTAAATAATTTAATTTCTCCATGTACACAAGGAAAATGAAAAACAAAAAATTCTTTTTCAATTCCCTCTAACTTGAGCTCCTGACTTTCCTTTTTGTTATCAGGTCGAGATGGCTACTCTGTCCAACGAACAACAGAGATGAAGTTTCAGATTGAGCAACCAGGAGAGAGCCGTCAAAACCTTATAAAAATTTCTCCAAGCCGTACACCAGATTCTGCCAGAGTAGCACAGAAAGGCAACAGTTTGACATTTACAATACAGGATGAAGAAGATCATTCAAGAAAATTGGAGATGTATATACTGTCGTGTATTGAGGTACCTTAAGGCGCACCACCTTTCTAATTGCCAATAACAAGCCTGGCATGAGGCATTGCACATTTATGATATCATGTTTGAGAGTGTAAACCTGTGATGCAAGCAATGATTAAGTGTCGGAGAAGGATAAAACCTACCACTCTGGTTAAATTTACCAGTCCGACAGCTCGACCTCATGCAACTTCTCTTAATTTTAGTTAGACAAGAGCAGAAACACAACCTATAACTCACCTCTCCCGGGCGAGAGAAGTAGACATTGGTGCTGGAAGGAAGCCCTGGAAGGACTAGGCTGTGCACTCTAACTCCATCTTCTCCAACAACTTGTCCCCTTGCCTTGCAGGCAAAAGAAAAAAAAAGGAAAAATAAGCAAGCTAGTCATTTTTTAAATGGGCTTCTGAGTTTGATGTCTTCGTCATCAATATGGTGAATTATCATAATCTCTTTATAAGTTCTGTGCAAAATTTGTAAACATAGTTGGATCCTTGTTGGTCAATTCCTTTTAACTCATGACACATGAATCAGCTTTTCTTCATATTCTTTGAGATTAAAAGATAGTTCTATGATGTGAAAGTGAAGAGAATAATAGCAGGTACAGCATTCTGATATTTTTCTTTAACCTTCTGTCTCAATTCTTAATGAATACTGATACATCAAATTAAATGAGGCAGAGACTACTCATATATGAATTCAGCTTACCAGTACTTCTGTTGAAATATCT

mRNA sequence

ATGACCAGCACAATTCTCTCTACCAACCCGTTAATTCGGTTGACATCTACTCCCCGATTTCGCGCTAAAAGTAGGTGGAAGAGTGCAGCAATTTCTGCTCGTCTTGACGATTCTAAGAACTCAGCTAATCAGCAACTCAATCTCTCTGTCCTTCGCTTCACACTCGGGATTCCTGGATTGGATGAGTCTTACTTACCCAGATGGATTGGCTATGGATTTGGTTCACTTCTTCTTTTGAATCACTTTGTTGGTTCGAATTCAGCTGCTCCCGTCACCCCAGCACAGTTAAGAACTGAGGCTTTAGGCATTTCCTTGGCAGCATTTTCTATTGCACTCCCCTACTTGGGAAAGTTTCTTAAGTTCTTAGCACTGCCACAGTGCCATTGTCCGCCAACGCTCAAGATTTGTAAACTTAAGGATGATGTCTTTCTAGACCTGGGGTTGGGTGGATGGCCATTGATAATCCTATCTCTATATCTAGCCTGTTCATCTCTGATAATGACTTATTTGCTTGGACCAGACAACAAAAAAGGAGTCTCACCACCTCCTTACATTATCCTCATTAAGGGTGCAGTTCCATCTGGCGAAGCTACCCTCCCTGAAGGTGCTGAGCAAATATTTGTCTTGTCACAAAATGTATCCGATAATGTGAAGGAAGACTTGGCTTGGGCAACATATATCTTGCTGCGCAATACAAACAGTATATCAGTGTTAATACAGATTCGAGGGGAGTTATGTGTTCGAGGATACTGGAATAGTCCGAATGATATATCAGGAGCAGATTTACTTGCCTGGTTTGAGGAGCAGCTTCAGAGCATTGGCCTGTCTGCATTGAATGATTCCCTCTATTTTCCTCAGATTTCAGAATCTGAACTTTGGCAAATGCTGCCCAAGGGCACTCGCTCAGTGTTGGTACAGCCGGTGGTTCAAAATTTAAGGCGAAGTGGCAATGAGATGGAAAAGATTGGAGGATTCATATTGCTGGCTTCAAGTCTAAGTTATGCATTTAGCGATAAAGATAGAGCCTGGATTAAAGCTCTTGCTAGCAAATTTGACGATAGGGACATGCTCTGA

Coding sequence (CDS)

ATGACCAGCACAATTCTCTCTACCAACCCGTTAATTCGGTTGACATCTACTCCCCGATTTCGCGCTAAAAGTAGGTGGAAGAGTGCAGCAATTTCTGCTCGTCTTGACGATTCTAAGAACTCAGCTAATCAGCAACTCAATCTCTCTGTCCTTCGCTTCACACTCGGGATTCCTGGATTGGATGAGTCTTACTTACCCAGATGGATTGGCTATGGATTTGGTTCACTTCTTCTTTTGAATCACTTTGTTGGTTCGAATTCAGCTGCTCCCGTCACCCCAGCACAGTTAAGAACTGAGGCTTTAGGCATTTCCTTGGCAGCATTTTCTATTGCACTCCCCTACTTGGGAAAGTTTCTTAAGTTCTTAGCACTGCCACAGTGCCATTGTCCGCCAACGCTCAAGATTTGTAAACTTAAGGATGATGTCTTTCTAGACCTGGGGTTGGGTGGATGGCCATTGATAATCCTATCTCTATATCTAGCCTGTTCATCTCTGATAATGACTTATTTGCTTGGACCAGACAACAAAAAAGGAGTCTCACCACCTCCTTACATTATCCTCATTAAGGGTGCAGTTCCATCTGGCGAAGCTACCCTCCCTGAAGGTGCTGAGCAAATATTTGTCTTGTCACAAAATGTATCCGATAATGTGAAGGAAGACTTGGCTTGGGCAACATATATCTTGCTGCGCAATACAAACAGTATATCAGTGTTAATACAGATTCGAGGGGAGTTATGTGTTCGAGGATACTGGAATAGTCCGAATGATATATCAGGAGCAGATTTACTTGCCTGGTTTGAGGAGCAGCTTCAGAGCATTGGCCTGTCTGCATTGAATGATTCCCTCTATTTTCCTCAGATTTCAGAATCTGAACTTTGGCAAATGCTGCCCAAGGGCACTCGCTCAGTGTTGGTACAGCCGGTGGTTCAAAATTTAAGGCGAAGTGGCAATGAGATGGAAAAGATTGGAGGATTCATATTGCTGGCTTCAAGTCTAAGTTATGCATTTAGCGATAAAGATAGAGCCTGGATTAAAGCTCTTGCTAGCAAATTTGACGATAGGGACATGCTCTGA

Protein sequence

MTSTILSTNPLIRLTSTPRFRAKSRWKSAAISARLDDSKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFVGSNSAAPVTPAQLRTEALGISLAAFSIALPYLGKFLKFLALPQCHCPPTLKICKLKDDVFLDLGLGGWPLIILSLYLACSSLIMTYLLGPDNKKGVSPPPYIILIKGAVPSGEATLPEGAEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQIRGELCVRGYWNSPNDISGADLLAWFEEQLQSIGLSALNDSLYFPQISESELWQMLPKGTRSVLVQPVVQNLRRSGNEMEKIGGFILLASSLSYAFSDKDRAWIKALASKFDDRDML

Homology

[Close]

BLAST of Spg002741 vs. NCBI nr
Match: XP_022141087.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X1 [Momordica charantia] >XP_022141088.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X1 [Momordica charantia] >XP_022141089.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X1 [Momordica charantia] >XP_022141090.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 476.9 bits (1226), Expect = 1.6e-130
Identity = 258/357 (72.27%), Postives = 273/357 (76.47%), Query Frame = 0


Query: 1   MTSTILSTNPLIRLTSTPRFRAKSRWKSAAISARLDDSKNSANQQLNLSVLRFTLGIPGL 60
           MT +ILS NPLIRLTSTPRFRAK+R K+ A+SARLDDSKNSANQQLNLSVLRFTLGIPGL
Sbjct: 1   MTGSILSPNPLIRLTSTPRFRAKTRLKAPAVSARLDDSKNSANQQLNLSVLRFTLGIPGL 60

Query: 61  DESYLPRWIGYGFGSLLLLNHFVGSNSAAPVTPAQLRTEALGISLAAFSIALPYLGKFLK 120
           DESYLPRWIGYGFGSLLLLNHF GSNSAAP TPAQLRTEALG+SLAAFSIALPYLGKFL 
Sbjct: 61  DESYLPRWIGYGFGSLLLLNHFFGSNSAAPTTPAQLRTEALGLSLAAFSIALPYLGKFL- 120

Query: 121 FLALPQCHCPPTLKICKLKDDVFLDLGLGGWPLIILSLYLACSSLIMTYLLGPDNKKGVS 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 PPPYIILIKGAVPSGEATLPEGAEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQ 240
                   KGAVPSGEA+LPEG EQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQ
Sbjct: 181 --------KGAVPSGEASLPEGTEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQ 240

Query: 241 IRGELCVRGYWNSPNDISGADLLAWFEEQLQSIGLSALNDSLYFPQISESELWQMLPKGT 300
           IRGELCVRGYWNSPNDI GADL+AWFEEQLQSIGLSALND LYFPQIS+SELW+MLP GT
Sbjct: 241 IRGELCVRGYWNSPNDICGADLVAWFEEQLQSIGLSALNDDLYFPQISDSELWKMLPNGT 284

Query: 301 RSVLVQPVVQNLRRSGNEMEKIGGFILLASSLSYAFSDKDRAWIKALASKFDDRDML 358
           RSVLVQPV    ++SGN+MEKIGGFILLASSLSYAFSDKDRAWI+ALA+KF DRD+L
Sbjct: 301 RSVLVQPV----KQSGNKMEKIGGFILLASSLSYAFSDKDRAWIRALANKFIDRDIL 284

[Close]

BLAST of Spg002741 vs. NCBI nr
Match: XP_023542853.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023542854.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023542855.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023542856.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023542857.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023542858.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023542859.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 473.8 bits (1218), Expect = 1.3e-129
Identity = 256/356 (71.91%), Postives = 273/356 (76.69%), Query Frame = 0


Query: 1   MTSTILSTNPLIRLTSTPRFRAKSRWKSAAISARLDDSKNSANQQLNLSVLRFTLGIPGL 60
           M+ TILS +PLIRL+ST RFRAK+  KS  I+ARLDDSKNS N+QLNLSVLRFTLGIPGL
Sbjct: 14  MSCTILSPDPLIRLSSTHRFRAKNGSKSPVITARLDDSKNSPNRQLNLSVLRFTLGIPGL 73

Query: 61  DESYLPRWIGYGFGSLLLLNHFVGSNSAAPVTPAQLRTEALGISLAAFSIALPYLGKFLK 120
           DESYLPRWIGYGFGSLLLLNHFVGSNSAAP+T AQLRTEALGISLAAFSIALPYLGKFL 
Sbjct: 74  DESYLPRWIGYGFGSLLLLNHFVGSNSAAPITSAQLRTEALGISLAAFSIALPYLGKFL- 133

Query: 121 FLALPQCHCPPTLKICKLKDDVFLDLGLGGWPLIILSLYLACSSLIMTYLLGPDNKKGVS 180
                                                                       
Sbjct: 134 ------------------------------------------------------------ 193

Query: 181 PPPYIILIKGAVPSGEATLPEGAEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQ 240
                   +GAVPSGEATLPEGAEQIFVLSQNVSDNVK+DLAWATYILLRNTNSISVLIQ
Sbjct: 194 --------EGAVPSGEATLPEGAEQIFVLSQNVSDNVKDDLAWATYILLRNTNSISVLIQ 253

Query: 241 IRGELCVRGYWNSPNDISGADLLAWFEEQLQSIGLSALNDSLYFPQISESELWQMLPKGT 300
           I+GELCVRGYWNSPNDISG DLLAWFEEQLQSIGLSALND+LYFPQISES LWQMLPKGT
Sbjct: 254 IQGELCVRGYWNSPNDISGTDLLAWFEEQLQSIGLSALNDALYFPQISESGLWQMLPKGT 300

Query: 301 RSVLVQPVVQNLRRSGNEMEKIGGFILLASSLSYAFSDKDRAWIKALASKFDDRDM 357
           RSVLVQPV QNL +SGNEMEKIGGFIL+ASSLSYAFSDKDRAWI+ALA+KFD+ D+
Sbjct: 314 RSVLVQPVAQNLNQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKFDNGDI 300

[Close]

BLAST of Spg002741 vs. NCBI nr
Match: KAG6574156.1 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 473.4 bits (1217), Expect = 1.7e-129
Identity = 256/356 (71.91%), Postives = 274/356 (76.97%), Query Frame = 0


Query: 1   MTSTILSTNPLIRLTSTPRFRAKSRWKSAAISARLDDSKNSANQQLNLSVLRFTLGIPGL 60
           M+ TILS +PLIRL+ST RFRAK+  KS  I+ARLDDSKNS N+QLNLSVLRFTLGIPGL
Sbjct: 1   MSCTILSPDPLIRLSSTHRFRAKNGSKSPLITARLDDSKNSPNRQLNLSVLRFTLGIPGL 60

Query: 61  DESYLPRWIGYGFGSLLLLNHFVGSNSAAPVTPAQLRTEALGISLAAFSIALPYLGKFLK 120
           DESYLPRWIGYGFGSLLLLNHFVGSNSAAP+T AQLRTEALGISLAAFSIALPYLGKFL 
Sbjct: 61  DESYLPRWIGYGFGSLLLLNHFVGSNSAAPITSAQLRTEALGISLAAFSIALPYLGKFL- 120

Query: 121 FLALPQCHCPPTLKICKLKDDVFLDLGLGGWPLIILSLYLACSSLIMTYLLGPDNKKGVS 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 PPPYIILIKGAVPSGEATLPEGAEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQ 240
                   +GAVPSGEATLPEGAEQIFVLSQ+VSDNVK+DLAWATYILLRNTNSISVLIQ
Sbjct: 181 --------EGAVPSGEATLPEGAEQIFVLSQSVSDNVKDDLAWATYILLRNTNSISVLIQ 240

Query: 241 IRGELCVRGYWNSPNDISGADLLAWFEEQLQSIGLSALNDSLYFPQISESELWQMLPKGT 300
           I+GELCVRGYWNSPNDISGADLLAWFEEQLQSIGLSALND+LYFPQISES LWQMLPKGT
Sbjct: 241 IQGELCVRGYWNSPNDISGADLLAWFEEQLQSIGLSALNDALYFPQISESGLWQMLPKGT 287

Query: 301 RSVLVQPVVQNLRRSGNEMEKIGGFILLASSLSYAFSDKDRAWIKALASKFDDRDM 357
           RSVLVQPV QNL +SGNEMEKIGGFIL+ASSLSYAFSDKDRAWI+ALA+KFD+ D+
Sbjct: 301 RSVLVQPVAQNLNQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKFDNGDL 287

[Close]

BLAST of Spg002741 vs. NCBI nr
Match: XP_022945332.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita moschata] >XP_022945333.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita moschata] >XP_022945334.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita moschata] >XP_022945335.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita moschata] >XP_022945336.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita moschata] >XP_022945337.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita moschata] >XP_022945338.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita moschata] >XP_022945339.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita moschata] >XP_022945340.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita moschata] >XP_022945341.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 473.0 bits (1216), Expect = 2.3e-129
Identity = 255/356 (71.63%), Postives = 275/356 (77.25%), Query Frame = 0


Query: 1   MTSTILSTNPLIRLTSTPRFRAKSRWKSAAISARLDDSKNSANQQLNLSVLRFTLGIPGL 60
           M+ TILS +PLIRL+STPRFRAK+  KS  I+ARLDDSKNS ++QLNLSVLRFTLGIPGL
Sbjct: 17  MSCTILSPDPLIRLSSTPRFRAKNGSKSPVITARLDDSKNSPSRQLNLSVLRFTLGIPGL 76

Query: 61  DESYLPRWIGYGFGSLLLLNHFVGSNSAAPVTPAQLRTEALGISLAAFSIALPYLGKFLK 120
           DESYLPRWIGYGFGSLLLLNHFVGS+SAAP+T AQLRTEALGISLAAFSIALPYLGKFL 
Sbjct: 77  DESYLPRWIGYGFGSLLLLNHFVGSSSAAPITSAQLRTEALGISLAAFSIALPYLGKFL- 136

Query: 121 FLALPQCHCPPTLKICKLKDDVFLDLGLGGWPLIILSLYLACSSLIMTYLLGPDNKKGVS 180
                                                                       
Sbjct: 137 ------------------------------------------------------------ 196

Query: 181 PPPYIILIKGAVPSGEATLPEGAEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQ 240
                   +GAVPSGEATLPEGAEQIFVLSQ+VSDNVK+DLAWATYILLRNTNSISVLIQ
Sbjct: 197 --------EGAVPSGEATLPEGAEQIFVLSQSVSDNVKDDLAWATYILLRNTNSISVLIQ 256

Query: 241 IRGELCVRGYWNSPNDISGADLLAWFEEQLQSIGLSALNDSLYFPQISESELWQMLPKGT 300
           I+GELCVRGYWNSPNDISGADLLAWFEEQLQSIGLSALND+LYFPQISES LWQMLPKGT
Sbjct: 257 IQGELCVRGYWNSPNDISGADLLAWFEEQLQSIGLSALNDALYFPQISESGLWQMLPKGT 303

Query: 301 RSVLVQPVVQNLRRSGNEMEKIGGFILLASSLSYAFSDKDRAWIKALASKFDDRDM 357
           RSVLVQPV QNL +SGNEMEKIGGFIL+ASSLSYAFSDKDRAWI+ALA+KFD+ D+
Sbjct: 317 RSVLVQPVAQNLNQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKFDNGDI 303

[Close]

BLAST of Spg002741 vs. NCBI nr
Match: XP_022968395.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X2 [Cucurbita maxima])

HSP 1 Score: 472.2 bits (1214), Expect = 3.9e-129
Identity = 256/356 (71.91%), Postives = 273/356 (76.69%), Query Frame = 0


Query: 1   MTSTILSTNPLIRLTSTPRFRAKSRWKSAAISARLDDSKNSANQQLNLSVLRFTLGIPGL 60
           M+ TILS +PLIRL+STPRFRAK+  KS  I+ARLDDSKNS N+QLNLSVLRFTLGIPGL
Sbjct: 1   MSCTILSPDPLIRLSSTPRFRAKNGSKSPVITARLDDSKNSPNRQLNLSVLRFTLGIPGL 60

Query: 61  DESYLPRWIGYGFGSLLLLNHFVGSNSAAPVTPAQLRTEALGISLAAFSIALPYLGKFLK 120
           DESYLPRWIGYGFGSLLLLNHFVGS+SAAP+T AQLRTEALGISLAAFSIALPYLGKFL 
Sbjct: 61  DESYLPRWIGYGFGSLLLLNHFVGSSSAAPITSAQLRTEALGISLAAFSIALPYLGKFL- 120

Query: 121 FLALPQCHCPPTLKICKLKDDVFLDLGLGGWPLIILSLYLACSSLIMTYLLGPDNKKGVS 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 PPPYIILIKGAVPSGEATLPEGAEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQ 240
                   +GAVPSGEATLPEGAEQIFVLSQNVSDNVK+DLAWATYILLRNTNSISVLI 
Sbjct: 181 --------EGAVPSGEATLPEGAEQIFVLSQNVSDNVKDDLAWATYILLRNTNSISVLIL 240

Query: 241 IRGELCVRGYWNSPNDISGADLLAWFEEQLQSIGLSALNDSLYFPQISESELWQMLPKGT 300
           I+GELCVRGYWNSPNDISGADLLAWFEEQLQSIGLSALNDSLYFPQISES LWQML KGT
Sbjct: 241 IQGELCVRGYWNSPNDISGADLLAWFEEQLQSIGLSALNDSLYFPQISESGLWQMLSKGT 287

Query: 301 RSVLVQPVVQNLRRSGNEMEKIGGFILLASSLSYAFSDKDRAWIKALASKFDDRDM 357
           RSVLVQPV QNL +SGNEMEKIGGFIL+ASSLSYAFSDKDRAWI+ALA+KFD+ D+
Sbjct: 301 RSVLVQPVAQNLNQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKFDNGDI 287

[Close]

BLAST of Spg002741 vs. ExPASy Swiss-Prot
Match: Q9FJ81 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CCB2 PE=1 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 3.7e-74
Identity = 158/339 (46.61%), Postives = 211/339 (62.24%), Query Frame = 0


Query: 18  PRFRAKSR-WKSAAISARLDD---SKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGF 77
           P+F  + R  +S  I AR ++      +++QQLNLSVLRFT GIPG DESYLPRWIGYGF
Sbjct: 12  PKFALQPRAQRSTRIFARTENDSPQSKTSDQQLNLSVLRFTFGIPGFDESYLPRWIGYGF 71

Query: 78  GSLLLLNHFVGSNSAAPVTPAQLRTEALGISLAAFSIALPYLGKFLKFLALPQCHCPPTL 137
           GSLLLLNHF   +++AP++ +Q+R+EALG+SLAAFSIALPY+GKFL              
Sbjct: 72  GSLLLLNHF---SASAPISESQMRSEALGLSLAAFSIALPYIGKFL-------------- 131

Query: 138 KICKLKDDVFLDLGLGGWPLIILSLYLACSSLIMTYLLGPDNKKGVSPPPYIILIKGAVP 197
                                                                  KG+V 
Sbjct: 132 -------------------------------------------------------KGSVV 191

Query: 198 SGEATLPEGAEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQIRGELCVRGYWNS 257
             + +LPE  EQ+FV+S N+ D++KEDLAWATY+LLRNT++I+VLI ++GELCVRGYWN 
Sbjct: 192 E-QRSLPEEGEQVFVISSNIGDSLKEDLAWATYVLLRNTSTIAVLISVQGELCVRGYWNC 251

Query: 258 PNDISGADLLAWFEEQLQSIGLSALNDSLYFPQISESEL-WQMLPKGTRSVLVQPVVQNL 317
           P+ +S A L  WF++++  IGL+ + ++LYFPQ + S L   +LP GTRS+ VQP+VQN 
Sbjct: 252 PDQMSKAQLHDWFKKKVDEIGLADVKETLYFPQYAGSALSLDILPDGTRSLFVQPLVQNT 273

Query: 318 RRSGNEMEKIGGFILLASSLSYAFSDKDRAWIKALASKF 352
               NE +K+ GF+L+AS+  YA+SDKDRAWI A+A KF
Sbjct: 312 ----NEPQKVNGFLLVASTAGYAYSDKDRAWIGAMAEKF 273

[Close]

BLAST of Spg002741 vs. ExPASy TrEMBL
Match: A0A6J1CJH9 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011568 PE=4 SV=1)

HSP 1 Score: 476.9 bits (1226), Expect = 7.6e-131
Identity = 258/357 (72.27%), Postives = 273/357 (76.47%), Query Frame = 0


Query: 1   MTSTILSTNPLIRLTSTPRFRAKSRWKSAAISARLDDSKNSANQQLNLSVLRFTLGIPGL 60
           MT +ILS NPLIRLTSTPRFRAK+R K+ A+SARLDDSKNSANQQLNLSVLRFTLGIPGL
Sbjct: 1   MTGSILSPNPLIRLTSTPRFRAKTRLKAPAVSARLDDSKNSANQQLNLSVLRFTLGIPGL 60

Query: 61  DESYLPRWIGYGFGSLLLLNHFVGSNSAAPVTPAQLRTEALGISLAAFSIALPYLGKFLK 120
           DESYLPRWIGYGFGSLLLLNHF GSNSAAP TPAQLRTEALG+SLAAFSIALPYLGKFL 
Sbjct: 61  DESYLPRWIGYGFGSLLLLNHFFGSNSAAPTTPAQLRTEALGLSLAAFSIALPYLGKFL- 120

Query: 121 FLALPQCHCPPTLKICKLKDDVFLDLGLGGWPLIILSLYLACSSLIMTYLLGPDNKKGVS 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 PPPYIILIKGAVPSGEATLPEGAEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQ 240
                   KGAVPSGEA+LPEG EQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQ
Sbjct: 181 --------KGAVPSGEASLPEGTEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQ 240

Query: 241 IRGELCVRGYWNSPNDISGADLLAWFEEQLQSIGLSALNDSLYFPQISESELWQMLPKGT 300
           IRGELCVRGYWNSPNDI GADL+AWFEEQLQSIGLSALND LYFPQIS+SELW+MLP GT
Sbjct: 241 IRGELCVRGYWNSPNDICGADLVAWFEEQLQSIGLSALNDDLYFPQISDSELWKMLPNGT 284

Query: 301 RSVLVQPVVQNLRRSGNEMEKIGGFILLASSLSYAFSDKDRAWIKALASKFDDRDML 358
           RSVLVQPV    ++SGN+MEKIGGFILLASSLSYAFSDKDRAWI+ALA+KF DRD+L
Sbjct: 301 RSVLVQPV----KQSGNKMEKIGGFILLASSLSYAFSDKDRAWIRALANKFIDRDIL 284

[Close]

BLAST of Spg002741 vs. ExPASy TrEMBL
Match: A0A6J1G0N4 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111449603 PE=4 SV=1)

HSP 1 Score: 473.0 bits (1216), Expect = 1.1e-129
Identity = 255/356 (71.63%), Postives = 275/356 (77.25%), Query Frame = 0


Query: 1   MTSTILSTNPLIRLTSTPRFRAKSRWKSAAISARLDDSKNSANQQLNLSVLRFTLGIPGL 60
           M+ TILS +PLIRL+STPRFRAK+  KS  I+ARLDDSKNS ++QLNLSVLRFTLGIPGL
Sbjct: 17  MSCTILSPDPLIRLSSTPRFRAKNGSKSPVITARLDDSKNSPSRQLNLSVLRFTLGIPGL 76

Query: 61  DESYLPRWIGYGFGSLLLLNHFVGSNSAAPVTPAQLRTEALGISLAAFSIALPYLGKFLK 120
           DESYLPRWIGYGFGSLLLLNHFVGS+SAAP+T AQLRTEALGISLAAFSIALPYLGKFL 
Sbjct: 77  DESYLPRWIGYGFGSLLLLNHFVGSSSAAPITSAQLRTEALGISLAAFSIALPYLGKFL- 136

Query: 121 FLALPQCHCPPTLKICKLKDDVFLDLGLGGWPLIILSLYLACSSLIMTYLLGPDNKKGVS 180
                                                                       
Sbjct: 137 ------------------------------------------------------------ 196

Query: 181 PPPYIILIKGAVPSGEATLPEGAEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQ 240
                   +GAVPSGEATLPEGAEQIFVLSQ+VSDNVK+DLAWATYILLRNTNSISVLIQ
Sbjct: 197 --------EGAVPSGEATLPEGAEQIFVLSQSVSDNVKDDLAWATYILLRNTNSISVLIQ 256

Query: 241 IRGELCVRGYWNSPNDISGADLLAWFEEQLQSIGLSALNDSLYFPQISESELWQMLPKGT 300
           I+GELCVRGYWNSPNDISGADLLAWFEEQLQSIGLSALND+LYFPQISES LWQMLPKGT
Sbjct: 257 IQGELCVRGYWNSPNDISGADLLAWFEEQLQSIGLSALNDALYFPQISESGLWQMLPKGT 303

Query: 301 RSVLVQPVVQNLRRSGNEMEKIGGFILLASSLSYAFSDKDRAWIKALASKFDDRDM 357
           RSVLVQPV QNL +SGNEMEKIGGFIL+ASSLSYAFSDKDRAWI+ALA+KFD+ D+
Sbjct: 317 RSVLVQPVAQNLNQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKFDNGDI 303

[Close]

BLAST of Spg002741 vs. ExPASy TrEMBL
Match: A0A6J1HXW3 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467648 PE=4 SV=1)

HSP 1 Score: 472.2 bits (1214), Expect = 1.9e-129
Identity = 256/356 (71.91%), Postives = 273/356 (76.69%), Query Frame = 0


Query: 1   MTSTILSTNPLIRLTSTPRFRAKSRWKSAAISARLDDSKNSANQQLNLSVLRFTLGIPGL 60
           M+ TILS +PLIRL+STPRFRAK+  KS  I+ARLDDSKNS N+QLNLSVLRFTLGIPGL
Sbjct: 1   MSCTILSPDPLIRLSSTPRFRAKNGSKSPVITARLDDSKNSPNRQLNLSVLRFTLGIPGL 60

Query: 61  DESYLPRWIGYGFGSLLLLNHFVGSNSAAPVTPAQLRTEALGISLAAFSIALPYLGKFLK 120
           DESYLPRWIGYGFGSLLLLNHFVGS+SAAP+T AQLRTEALGISLAAFSIALPYLGKFL 
Sbjct: 61  DESYLPRWIGYGFGSLLLLNHFVGSSSAAPITSAQLRTEALGISLAAFSIALPYLGKFL- 120

Query: 121 FLALPQCHCPPTLKICKLKDDVFLDLGLGGWPLIILSLYLACSSLIMTYLLGPDNKKGVS 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 PPPYIILIKGAVPSGEATLPEGAEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQ 240
                   +GAVPSGEATLPEGAEQIFVLSQNVSDNVK+DLAWATYILLRNTNSISVLI 
Sbjct: 181 --------EGAVPSGEATLPEGAEQIFVLSQNVSDNVKDDLAWATYILLRNTNSISVLIL 240

Query: 241 IRGELCVRGYWNSPNDISGADLLAWFEEQLQSIGLSALNDSLYFPQISESELWQMLPKGT 300
           I+GELCVRGYWNSPNDISGADLLAWFEEQLQSIGLSALNDSLYFPQISES LWQML KGT
Sbjct: 241 IQGELCVRGYWNSPNDISGADLLAWFEEQLQSIGLSALNDSLYFPQISESGLWQMLSKGT 287

Query: 301 RSVLVQPVVQNLRRSGNEMEKIGGFILLASSLSYAFSDKDRAWIKALASKFDDRDM 357
           RSVLVQPV QNL +SGNEMEKIGGFIL+ASSLSYAFSDKDRAWI+ALA+KFD+ D+
Sbjct: 301 RSVLVQPVAQNLNQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKFDNGDI 287

[Close]

BLAST of Spg002741 vs. ExPASy TrEMBL
Match: A0A6J1HX31 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467648 PE=4 SV=1)

HSP 1 Score: 472.2 bits (1214), Expect = 1.9e-129
Identity = 256/356 (71.91%), Postives = 273/356 (76.69%), Query Frame = 0


Query: 1   MTSTILSTNPLIRLTSTPRFRAKSRWKSAAISARLDDSKNSANQQLNLSVLRFTLGIPGL 60
           M+ TILS +PLIRL+STPRFRAK+  KS  I+ARLDDSKNS N+QLNLSVLRFTLGIPGL
Sbjct: 1   MSCTILSPDPLIRLSSTPRFRAKNGSKSPVITARLDDSKNSPNRQLNLSVLRFTLGIPGL 60

Query: 61  DESYLPRWIGYGFGSLLLLNHFVGSNSAAPVTPAQLRTEALGISLAAFSIALPYLGKFLK 120
           DESYLPRWIGYGFGSLLLLNHFVGS+SAAP+T AQLRTEALGISLAAFSIALPYLGKFL 
Sbjct: 61  DESYLPRWIGYGFGSLLLLNHFVGSSSAAPITSAQLRTEALGISLAAFSIALPYLGKFL- 120

Query: 121 FLALPQCHCPPTLKICKLKDDVFLDLGLGGWPLIILSLYLACSSLIMTYLLGPDNKKGVS 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 PPPYIILIKGAVPSGEATLPEGAEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQ 240
                   +GAVPSGEATLPEGAEQIFVLSQNVSDNVK+DLAWATYILLRNTNSISVLI 
Sbjct: 181 --------EGAVPSGEATLPEGAEQIFVLSQNVSDNVKDDLAWATYILLRNTNSISVLIL 240

Query: 241 IRGELCVRGYWNSPNDISGADLLAWFEEQLQSIGLSALNDSLYFPQISESELWQMLPKGT 300
           I+GELCVRGYWNSPNDISGADLLAWFEEQLQSIGLSALNDSLYFPQISES LWQML KGT
Sbjct: 241 IQGELCVRGYWNSPNDISGADLLAWFEEQLQSIGLSALNDSLYFPQISESGLWQMLSKGT 287

Query: 301 RSVLVQPVVQNLRRSGNEMEKIGGFILLASSLSYAFSDKDRAWIKALASKFDDRDM 357
           RSVLVQPV QNL +SGNEMEKIGGFIL+ASSLSYAFSDKDRAWI+ALA+KFD+ D+
Sbjct: 301 RSVLVQPVAQNLNQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKFDNGDI 287

[Close]

BLAST of Spg002741 vs. ExPASy TrEMBL
Match: A0A1S4DSW9 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484048 PE=4 SV=1)

HSP 1 Score: 461.1 bits (1185), Expect = 4.3e-126
Identity = 252/357 (70.59%), Postives = 269/357 (75.35%), Query Frame = 0


Query: 1   MTSTILSTNPLIRLTSTPRFRAKSRWKSAAISARLDDSKNSANQQLNLSVLRFTLGIPGL 60
           M S+I S +PL +LTS   FRAKS+ K+ AISARLDDSKNSANQQLNLSVLRFTLGIPGL
Sbjct: 1   MISSIPSPSPLNQLTSALPFRAKSKMKAPAISARLDDSKNSANQQLNLSVLRFTLGIPGL 60

Query: 61  DESYLPRWIGYGFGSLLLLNHFVGSNSAAPVTPAQLRTEALGISLAAFSIALPYLGKFLK 120
           DESYLPRWIGYGFGSLLLLNHFVGSNSAA  TPAQLRTEALGISLAAFSIALPYLGKFL 
Sbjct: 61  DESYLPRWIGYGFGSLLLLNHFVGSNSAALTTPAQLRTEALGISLAAFSIALPYLGKFL- 120

Query: 121 FLALPQCHCPPTLKICKLKDDVFLDLGLGGWPLIILSLYLACSSLIMTYLLGPDNKKGVS 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 PPPYIILIKGAVPSGEATLPEGAEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQ 240
                   KGAVPSGEATLPEG EQIF+LSQ VSDN+KED+AWATYILLRNTNSISVLIQ
Sbjct: 181 --------KGAVPSGEATLPEGTEQIFLLSQIVSDNLKEDIAWATYILLRNTNSISVLIQ 240

Query: 241 IRGELCVRGYWNSPNDISGADLLAWFEEQLQSIGLSALNDSLYFPQISESELWQMLPKGT 300
            +G LCVRGYWNSPNDIS ADLLAWFEEQLQSIGLSAL D++YFPQISES LWQMLPKGT
Sbjct: 241 TQGALCVRGYWNSPNDISSADLLAWFEEQLQSIGLSALKDAVYFPQISESGLWQMLPKGT 288

Query: 301 RSVLVQPVVQNLRRSGNEMEKIGGFILLASSLSYAFSDKDRAWIKALASKFDDRDML 358
           RSVLVQPVVQNL++SGNEMEK+GGFILLASSLSYAFSDKDRAWI+ALA+KFDDR +L
Sbjct: 301 RSVLVQPVVQNLKQSGNEMEKMGGFILLASSLSYAFSDKDRAWIRALANKFDDRAIL 288

[Close]

BLAST of Spg002741 vs. TAIR 10
Match: AT5G52110.1 (Protein of unknown function (DUF2930) )

HSP 1 Score: 280.0 bits (715), Expect = 2.6e-75
Identity = 158/339 (46.61%), Postives = 211/339 (62.24%), Query Frame = 0


Query: 18  PRFRAKSR-WKSAAISARLDD---SKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGF 77
           P+F  + R  +S  I AR ++      +++QQLNLSVLRFT GIPG DESYLPRWIGYGF
Sbjct: 12  PKFALQPRAQRSTRIFARTENDSPQSKTSDQQLNLSVLRFTFGIPGFDESYLPRWIGYGF 71

Query: 78  GSLLLLNHFVGSNSAAPVTPAQLRTEALGISLAAFSIALPYLGKFLKFLALPQCHCPPTL 137
           GSLLLLNHF   +++AP++ +Q+R+EALG+SLAAFSIALPY+GKFL              
Sbjct: 72  GSLLLLNHF---SASAPISESQMRSEALGLSLAAFSIALPYIGKFL-------------- 131

Query: 138 KICKLKDDVFLDLGLGGWPLIILSLYLACSSLIMTYLLGPDNKKGVSPPPYIILIKGAVP 197
                                                                  KG+V 
Sbjct: 132 -------------------------------------------------------KGSVV 191

Query: 198 SGEATLPEGAEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQIRGELCVRGYWNS 257
             + +LPE  EQ+FV+S N+ D++KEDLAWATY+LLRNT++I+VLI ++GELCVRGYWN 
Sbjct: 192 E-QRSLPEEGEQVFVISSNIGDSLKEDLAWATYVLLRNTSTIAVLISVQGELCVRGYWNC 251

Query: 258 PNDISGADLLAWFEEQLQSIGLSALNDSLYFPQISESEL-WQMLPKGTRSVLVQPVVQNL 317
           P+ +S A L  WF++++  IGL+ + ++LYFPQ + S L   +LP GTRS+ VQP+VQN 
Sbjct: 252 PDQMSKAQLHDWFKKKVDEIGLADVKETLYFPQYAGSALSLDILPDGTRSLFVQPLVQNT 273

Query: 318 RRSGNEMEKIGGFILLASSLSYAFSDKDRAWIKALASKF 352
               NE +K+ GF+L+AS+  YA+SDKDRAWI A+A KF
Sbjct: 312 ----NEPQKVNGFLLVASTAGYAYSDKDRAWIGAMAEKF 273

[Close]

BLAST of Spg002741 vs. TAIR 10
Match: AT5G52110.2 (Protein of unknown function (DUF2930) )

HSP 1 Score: 280.0 bits (715), Expect = 2.6e-75
Identity = 158/339 (46.61%), Postives = 211/339 (62.24%), Query Frame = 0


Query: 18  PRFRAKSR-WKSAAISARLDD---SKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGF 77
           P+F  + R  +S  I AR ++      +++QQLNLSVLRFT GIPG DESYLPRWIGYGF
Sbjct: 12  PKFALQPRAQRSTRIFARTENDSPQSKTSDQQLNLSVLRFTFGIPGFDESYLPRWIGYGF 71

Query: 78  GSLLLLNHFVGSNSAAPVTPAQLRTEALGISLAAFSIALPYLGKFLKFLALPQCHCPPTL 137
           GSLLLLNHF   +++AP++ +Q+R+EALG+SLAAFSIALPY+GKFL              
Sbjct: 72  GSLLLLNHF---SASAPISESQMRSEALGLSLAAFSIALPYIGKFL-------------- 131

Query: 138 KICKLKDDVFLDLGLGGWPLIILSLYLACSSLIMTYLLGPDNKKGVSPPPYIILIKGAVP 197
                                                                  KG+V 
Sbjct: 132 -------------------------------------------------------KGSVV 191

Query: 198 SGEATLPEGAEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQIRGELCVRGYWNS 257
             + +LPE  EQ+FV+S N+ D++KEDLAWATY+LLRNT++I+VLI ++GELCVRGYWN 
Sbjct: 192 E-QRSLPEEGEQVFVISSNIGDSLKEDLAWATYVLLRNTSTIAVLISVQGELCVRGYWNC 251

Query: 258 PNDISGADLLAWFEEQLQSIGLSALNDSLYFPQISESEL-WQMLPKGTRSVLVQPVVQNL 317
           P+ +S A L  WF++++  IGL+ + ++LYFPQ + S L   +LP GTRS+ VQP+VQN 
Sbjct: 252 PDQMSKAQLHDWFKKKVDEIGLADVKETLYFPQYAGSALSLDILPDGTRSLFVQPLVQNT 273

Query: 318 RRSGNEMEKIGGFILLASSLSYAFSDKDRAWIKALASKF 352
               NE +K+ GF+L+AS+  YA+SDKDRAWI A+A KF
Sbjct: 312 ----NEPQKVNGFLLVASTAGYAYSDKDRAWIGAMAEKF 273

The following BLAST results are available for this feature:

BLAST of Spg002741 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141087.1	1.6e-130	72.27	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X1 ...	[more]
XP_023542853.1	1.3e-129	71.91	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita ...	[more]
KAG6574156.1	1.7e-129	71.91	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic, partial [C...	[more]
XP_022945332.1	2.3e-129	71.63	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita ...	[more]
XP_022968395.1	3.9e-129	71.91	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X2 ...	[more]

BLAST of Spg002741 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJ81	3.7e-74	46.61	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic OS=Arabidop...	[more]

BLAST of Spg002741 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CJH9	7.6e-131	72.27	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X1 ...	[more]
A0A6J1G0N4	1.1e-129	71.63	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic OS=Cucurbit...	[more]
A0A6J1HXW3	1.9e-129	71.91	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X1 ...	[more]
A0A6J1HX31	1.9e-129	71.91	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X2 ...	[more]
A0A1S4DSW9	4.3e-126	70.59	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X1 ...	[more]

BLAST of Spg002741 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G52110.1	2.6e-75	46.61	Protein of unknown function (DUF2930)	[more]
AT5G52110.2	2.6e-75	46.61	Protein of unknown function (DUF2930)	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021325	Cofactor assembly of complex C subunit B, CCB2/CCB4	PFAM	PF11152	CCB2_CCB4	coord: 188..351 e-value: 7.6E-38 score: 129.8 coord: 65..120 e-value: 9.4E-14 score: 51.2
IPR044970	COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic	PANTHER	PTHR36403	PROTEIN COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, CHLOROPLASTIC	coord: 187..352 coord: 14..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg002741.1	Spg002741.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010190	cytochrome b6f complex assembly