Spg002736 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg002736
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Myb transcription factor
Location	scaffold6: 1580447 .. 1582278 (-)
RNA-Seq Expression	Spg002736
Synteny	Spg002736

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAGCCAAAATGAAAAGACCTGAAACAATAAAGGCTTGGTGGAAAAGCAGAGGAGAAGAGAGATGGGGTCTGCAGAAACAGAGAAAGAAAAGCCAAAGAAGAAAGGGTTATGGTCACCTGAGGAAGATGAAAAGTTGAGAAGCTTCATCCTCAACAATGGCCATGGCTGCTGGACCTCTGTCCCCATTAAAGCAGGTTAACCTTTTTTTTTCTTCCTTTTTTACCCCCAACCAATCATTCTTTGTATTCATTATAGAAAAAGATTTGAACCCTTTTTGGTAATTTTCAATGCAGGGTTGCTGAGAAGCTCAAAGAGCTGCAGATTGAGATGGATCAATTACCTGAGGCCAGGATTGAAAAAAGGGATGTTTAGCCAACAAGAACAAGAGAAAATCTTGACCCTCCATCGCTTGTTAGGCAATAGGTAAATAACTCTTCTTTCTCGGCTCTGATACTATGTTGAATTATTGTTCTCGGATGGATCACCGTAAATTTAATTTAATTAGGTGGTCTACGATAGCGCAACATTTGACTGGAAGAACAGATAACGAGATAAAGAATTTTTGGAATTCTCATTTGAAGAAGAAAGTGGATAATACCCGGAATCCAGTTTCTTCTTCGTATTTGAAAAGTCGAGTTTTTTCGAAGCCAGATCCGCCATTGGAGGAGATGGGAAGTTCAGAAGATGAGCAGAGGAGAAGCCAGCCAAAGATTTTGTTTGCAGAATGGCTCTCTGTGATTGATAATAACGGTGAAAGCTCCATGGAAGGAAGCTTTGATGGTGAGGGAAGAACAAGCAGAGAGGCCTATGGTTTTGAGATGTTCAATTGGGACTTTGATTTTGAGGCACAGATTTCTGATGACTTTGCAACTTGTGATCAATTATGGTAAATTGTGTATTTTTTAGCCTAATTTATAAAAAGTTCATGTATAGTTTAGTTTAATTTGATTGAGTTTAGGACTATACCAATCTAACTTAGTTAAAAAGATTCTTTTAGAAACAGTTCATAATGGATAAAATATAATCAAATTTTGAGTACGTACTTAATAGGTACGATATATCTATTTCCCCTAAAAGAAAGAAGGTTTGAATCTTCACCATTGTATTTTTTCTTTAATATAATAAGGATACAAGAAATCCTCTTCAAATTAAAGTTAAAAATCCGATGTTTTGATAAAGTTCTAAATAAAATTTTCTAATGAAAAGTGACGTTTCTTTTTTTTTTTAATGATTTCAGAAAAAATTGCATCAATCTCACCAAAGATCAACTGTGGAAGTAATTAGAAAAGAAATTACCATATGACAACTCTCTTTTATTGATAACATACATACTCAAGCATGTAATCTCATCCAAAGGACACATTTTTCTCCCACATTTCAACTTGTTTGATTGAAGTTTCTTTTCTGGTTCGAAAGTAGTCGAGAGCAGTCGGGCTAAAAGGCGGGAGCAACGAGCAAGGGCTCGAGAACGAAGGACGTTTTACGAGCATATCCATCATGAACTTGGTGGTCAAGCCTTGGGTAGGGCAAGCCAATTCCTCCAAGCAGAGCTCAGTGGCATTTGGTGGGATGGTTGGCTTGAAGGTTAAGAGTTTGGAGTATTCATTTAGGCTGTGAAACATGTAGTCATACACATTTTCCATGCTCAATTGCTCTTCAATGAACTTGCTTGCTGCCTTCCCAATTGCCTGTGCCTAAGAAGGCCAATAAAAGAAACTCTTCAATCAAAGGTATTAATGACTTAAAAGTGCTTTTGAAGATGTTTTTCTCCATATTTCATTTGTATTTTTGACTAAACAAATACGCTTCTCGAATTTTTATCAAGGTTTC

mRNA sequence

ATGGGGTCTGCAGAAACAGAGAAAGAAAAGCCAAAGAAGAAAGGGTTATGGTCACCTGAGGAAGATGAAAAGTTGAGAAGCTTCATCCTCAACAATGGCCATGGCTGCTGGACCTCTGTCCCCATTAAAGCAGGGTTGCTGAGAAGCTCAAAGAGCTGCAGATTGAGATGGATCAATTACCTGAGGCCAGGATTGAAAAAAGGGATGTTTAGCCAACAAGAACAAGAGAAAATCTTGACCCTCCATCGCTTGTTAGGCAATAGGTGGTCTACGATAGCGCAACATTTGACTGGAAGAACAGATAACGAGATAAAGAATTTTTGGAATTCTCATTTGAAGAAGAAAGTGGATAATACCCGGAATCCAGTTTCTTCTTCGTATTTGAAAAGTCGAGTTTTTTCGAAGCCAGATCCGCCATTGGAGGAGATGGGAAGTTCAGAAGATGAGCAGAGGAGAAGCCAGCCAAAGATTTTGTTTGCAGAATGGCTCTCTGTGATTGATAATAACGGTGAAAGCTCCATGGAAGGAAGCTTTGATGGTGAGGGAAGAACAAGCAGAGAGGCCTATGGTTTTGAGATGTTCAATTGGGACTTTGATTTTGAGGCACAGATTTCTGATGACTTTGCAACTTGTGATCAATTATGGTAA

Coding sequence (CDS)

ATGGGGTCTGCAGAAACAGAGAAAGAAAAGCCAAAGAAGAAAGGGTTATGGTCACCTGAGGAAGATGAAAAGTTGAGAAGCTTCATCCTCAACAATGGCCATGGCTGCTGGACCTCTGTCCCCATTAAAGCAGGGTTGCTGAGAAGCTCAAAGAGCTGCAGATTGAGATGGATCAATTACCTGAGGCCAGGATTGAAAAAAGGGATGTTTAGCCAACAAGAACAAGAGAAAATCTTGACCCTCCATCGCTTGTTAGGCAATAGGTGGTCTACGATAGCGCAACATTTGACTGGAAGAACAGATAACGAGATAAAGAATTTTTGGAATTCTCATTTGAAGAAGAAAGTGGATAATACCCGGAATCCAGTTTCTTCTTCGTATTTGAAAAGTCGAGTTTTTTCGAAGCCAGATCCGCCATTGGAGGAGATGGGAAGTTCAGAAGATGAGCAGAGGAGAAGCCAGCCAAAGATTTTGTTTGCAGAATGGCTCTCTGTGATTGATAATAACGGTGAAAGCTCCATGGAAGGAAGCTTTGATGGTGAGGGAAGAACAAGCAGAGAGGCCTATGGTTTTGAGATGTTCAATTGGGACTTTGATTTTGAGGCACAGATTTCTGATGACTTTGCAACTTGTGATCAATTATGGTAA

Protein sequence

MGSAETEKEKPKKKGLWSPEEDEKLRSFILNNGHGCWTSVPIKAGLLRSSKSCRLRWINYLRPGLKKGMFSQQEQEKILTLHRLLGNRWSTIAQHLTGRTDNEIKNFWNSHLKKKVDNTRNPVSSSYLKSRVFSKPDPPLEEMGSSEDEQRRSQPKILFAEWLSVIDNNGESSMEGSFDGEGRTSREAYGFEMFNWDFDFEAQISDDFATCDQLW

Homology

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BLAST of Spg002736 vs. NCBI nr
Match: XP_011652772.1 (LOW QUALITY PROTEIN: transcription factor LAF1 [Cucumis sativus])

HSP 1 Score: 335.5 bits (859), Expect = 3.4e-88
Identity = 171/216 (79.17%), Postives = 180/216 (83.33%), Query Frame = 0


Query: 1   MGSAETEKEKPKKKGLWSPEEDEKLRSFILNNGHGCWTSVPIKAGLLRSSKSCRLRWINY 60
           MG  ETEKEK KKKGL SPEEDEKLRSFIL NGHGCWTSVPIKAGLLR+SKSCRLRW NY
Sbjct: 1   MGCRETEKEKVKKKGLXSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNY 60

Query: 61  LRPGLKKGMFSQQEQEKILTLHRLLGNRWSTIAQHLTGRTDNEIKNFWNSHLKKKVDNTR 120
           LRPGLK+GMFSQQE EKILTLHRLLGNRWS IAQHL GRTDNEIKN+WNSHLKKKV    
Sbjct: 61  LRPGLKRGMFSQQEDEKILTLHRLLGNRWSQIAQHLAGRTDNEIKNYWNSHLKKKV---- 120

Query: 121 NPVSSSYLKSRVFSKPDPPLEEMGSSEDEQRRSQPKILFAEWLSVIDNNGESSMEGSFDG 180
             ++    KS VFS  DPPLEEMGSS +E+  SQP++LFAEWLSV D NG SSMEGSFDG
Sbjct: 121 -VLNFQDFKSGVFSNRDPPLEEMGSSGNERIESQPRVLFAEWLSVSDVNGGSSMEGSFDG 180

Query: 181 EG--RTSREAYGFEMFNWDFDFEAQISDDFATCDQL 215
           EG  RTSRE YGFEM NWD DFE  ISD FATCDQL
Sbjct: 181 EGRRRTSREGYGFEMLNWDLDFEGHISDGFATCDQL 211

[Close]

BLAST of Spg002736 vs. NCBI nr
Match: XP_008439218.1 (PREDICTED: transcription factor LAF1-like isoform X2 [Cucumis melo])

HSP 1 Score: 325.9 bits (834), Expect = 2.7e-85
Identity = 163/217 (75.12%), Postives = 174/217 (80.18%), Query Frame = 0


Query: 1   MGSAETEKEKPKKKGLWSPEEDEKLRSFILNNGHGCWTSVPIKAGLLRSSKSCRLRWINY 60
           MG  ETEKEK KKKGLWSPEEDEKLRSFIL NGHGCWTSVPIKAGLLR+SKSCRLRW NY
Sbjct: 36  MGCRETEKEKVKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNY 95

Query: 61  LRPGLKKGMFSQQEQEKILTLHRLLGNRWSTIAQHLTGRTDNEIKNFWNSHLKKKVDNTR 120
           LRPGLK+GMFSQQE EKILTLHRLLGNRWS IAQHL GRTDNEIKN+WNSHLKKKV + R
Sbjct: 96  LRPGLKRGMFSQQEDEKILTLHRLLGNRWSQIAQHLAGRTDNEIKNYWNSHLKKKVVSNR 155

Query: 121 NPVSSSYLKSRVFSKPDPPLEEMGSSEDEQRRSQPKILFAEWLSVIDNNGESSMEGSFDG 180
                           DPPLE MGSS  ++  ++P++LFAEWLSV D N  SSMEGSFDG
Sbjct: 156 ----------------DPPLEGMGSSGSKRSETRPRVLFAEWLSVSDINSGSSMEGSFDG 215

Query: 181 EGR--TSREAYGFEMFNWDFDFEAQISDDFATCDQLW 216
           EGR  TSRE YGFEM NWD DFE  ISD FATCD+LW
Sbjct: 216 EGRRTTSREGYGFEMLNWDLDFEGHISDGFATCDELW 236

[Close]

BLAST of Spg002736 vs. NCBI nr
Match: XP_008439219.1 (PREDICTED: transcription factor LAF1-like isoform X3 [Cucumis melo])

HSP 1 Score: 319.3 bits (817), Expect = 2.5e-83
Identity = 163/223 (73.09%), Postives = 174/223 (78.03%), Query Frame = 0


Query: 1   MGSAETEKEKPKKKGLWSPEEDEKLRSFILNNGHGCWTSVPIKAGLLRSSKSCRLRWINY 60
           MG  ETEKEK KKKGLWSPEEDEKLRSFIL NGHGCWTSVPIKAGLLR+SKSCRLRW NY
Sbjct: 36  MGCRETEKEKVKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNY 95

Query: 61  LRPGLKKGMFSQQEQEKILTLHRLLGN------RWSTIAQHLTGRTDNEIKNFWNSHLKK 120
           LRPGLK+GMFSQQE EKILTLHRLLGN      RWS IAQHL GRTDNEIKN+WNSHLKK
Sbjct: 96  LRPGLKRGMFSQQEDEKILTLHRLLGNRMMISIRWSQIAQHLAGRTDNEIKNYWNSHLKK 155

Query: 121 KVDNTRNPVSSSYLKSRVFSKPDPPLEEMGSSEDEQRRSQPKILFAEWLSVIDNNGESSM 180
           KV + R                DPPLE MGSS  ++  ++P++LFAEWLSV D N  SSM
Sbjct: 156 KVVSNR----------------DPPLEGMGSSGSKRSETRPRVLFAEWLSVSDINSGSSM 215

Query: 181 EGSFDGEGR--TSREAYGFEMFNWDFDFEAQISDDFATCDQLW 216
           EGSFDGEGR  TSRE YGFEM NWD DFE  ISD FATCD+LW
Sbjct: 216 EGSFDGEGRRTTSREGYGFEMLNWDLDFEGHISDGFATCDELW 242

[Close]

BLAST of Spg002736 vs. NCBI nr
Match: XP_008439216.1 (PREDICTED: transcription factor LAF1-like isoform X1 [Cucumis melo])

HSP 1 Score: 319.3 bits (817), Expect = 2.5e-83
Identity = 163/223 (73.09%), Postives = 174/223 (78.03%), Query Frame = 0


Query: 1   MGSAETEKEKPKKKGLWSPEEDEKLRSFILNNGHGCWTSVPIKAGLLRSSKSCRLRWINY 60
           MG  ETEKEK KKKGLWSPEEDEKLRSFIL NGHGCWTSVPIKAGLLR+SKSCRLRW NY
Sbjct: 36  MGCRETEKEKVKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNY 95

Query: 61  LRPGLKKGMFSQQEQEKILTLHRLLGN------RWSTIAQHLTGRTDNEIKNFWNSHLKK 120
           LRPGLK+GMFSQQE EKILTLHRLLGN      RWS IAQHL GRTDNEIKN+WNSHLKK
Sbjct: 96  LRPGLKRGMFSQQEDEKILTLHRLLGNRMMISIRWSQIAQHLAGRTDNEIKNYWNSHLKK 155

Query: 121 KVDNTRNPVSSSYLKSRVFSKPDPPLEEMGSSEDEQRRSQPKILFAEWLSVIDNNGESSM 180
           KV + R                DPPLE MGSS  ++  ++P++LFAEWLSV D N  SSM
Sbjct: 156 KVVSNR----------------DPPLEGMGSSGSKRSETRPRVLFAEWLSVSDINSGSSM 215

Query: 181 EGSFDGEGR--TSREAYGFEMFNWDFDFEAQISDDFATCDQLW 216
           EGSFDGEGR  TSRE YGFEM NWD DFE  ISD FATCD+LW
Sbjct: 216 EGSFDGEGRRTTSREGYGFEMLNWDLDFEGHISDGFATCDELW 242

[Close]

BLAST of Spg002736 vs. NCBI nr
Match: XP_008439220.1 (PREDICTED: transcription factor LAF1-like isoform X4 [Cucumis melo])

HSP 1 Score: 315.5 bits (807), Expect = 3.6e-82
Identity = 162/222 (72.97%), Postives = 173/222 (77.93%), Query Frame = 0


Query: 1   MGSAETEKEKPKKKGLWSPEEDEKLRSFILNNGHGCWTSVPIKAGLLRSSKSCRLRWINY 60
           MG  ETEKEK KKKGLWSPEEDEKLRSFIL NGHGCWTSVPIKAGLLR+SKSCRLRW NY
Sbjct: 36  MGCRETEKEKVKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNY 95

Query: 61  LRPGLKKGMFSQQEQEKILTLHRLLGN------RWSTIAQHLTGRTDNEIKNFWNSHLKK 120
           LRPGLK+GMFSQQE EKILTLHRLLGN      RWS IAQHL GRTDNEIKN+WNSHLKK
Sbjct: 96  LRPGLKRGMFSQQEDEKILTLHRLLGNRMMISIRWSQIAQHLAGRTDNEIKNYWNSHLKK 155

Query: 121 KVDNTRNPVSSSYLKSRVFSKPDPPLEEMGSSEDEQRRSQPKILFAEWLSVIDNNGESSM 180
           KV + R                DPPLE MGSS  ++  ++P++LFAEWLSV D N  SSM
Sbjct: 156 KVVSNR----------------DPPLEGMGSSGSKRSETRPRVLFAEWLSVSDINSGSSM 215

Query: 181 EGSFDGEGR--TSREAYGFEMFNWDFDFEAQISDDFATCDQL 215
           EGSFDGEGR  TSRE YGFEM NWD DFE  ISD FATCD+L
Sbjct: 216 EGSFDGEGRRTTSREGYGFEMLNWDLDFEGHISDGFATCDEL 241

[Close]

BLAST of Spg002736 vs. ExPASy Swiss-Prot
Match: Q9M0K4 (Transcription factor LAF1 OS=Arabidopsis thaliana OX=3702 GN=LAF1 PE=1 SV=2)

HSP 1 Score: 175.6 bits (444), Expect = 5.9e-43
Identity = 99/193 (51.30%), Postives = 120/193 (62.18%), Query Frame = 0


Query: 4   AETEKEKPKKKGLWSPEEDEKLRSFILNNGHGCWTSVPIKAGLLRSSKSCRLRWINYLRP 63
           A+T+  +  +KGLWSPEEDEKLRSFIL+ GH CWT+VPIKAGL R+ KSCRLRWINYLRP
Sbjct: 2   AKTKYGERHRKGLWSPEEDEKLRSFILSYGHSCWTTVPIKAGLQRNGKSCRLRWINYLRP 61

Query: 64  GLKKGMFSQQEQEKILTLHRLLGNRWSTIAQHLTGRTDNEIKNFWNSHLKKK-------- 123
           GLK+ M S +E+E ILT H  LGN+WS IA+ L GRTDNEIKN+W+SHLKKK        
Sbjct: 62  GLKRDMISAEEEETILTFHSSLGNKWSQIAKFLPGRTDNEIKNYWHSHLKKKWLKSQSLQ 121

Query: 124 -VDNTRNPVSSS-------------YLKSRVFS-------KPDPPLEEMGSSEDEQRRSQ 165
              +   P SSS              + + VFS       K   P +E   +   Q  S 
Sbjct: 122 DAKSISPPSSSSSSLVACGKRNPETLISNHVFSFQRLLENKSSSPSQESNGNNSHQCSSA 181

[Close]

BLAST of Spg002736 vs. ExPASy Swiss-Prot
Match: P20027 (Myb-related protein Hv33 OS=Hordeum vulgare OX=4513 GN=MYB2 PE=2 SV=3)

HSP 1 Score: 161.0 bits (406), Expect = 1.5e-38
Identity = 81/140 (57.86%), Postives = 101/140 (72.14%), Query Frame = 0


Query: 10  KPK-KKGLWSPEEDEKLRSFILNNGHGCWTSVPIKAGLLRSSKSCRLRWINYLRPGLKKG 69
           +PK +KGLWSPEEDEKL + I+ +G GCW+SVP  A L R  KSCRLRWINYLRP LK+G
Sbjct: 11  QPKVRKGLWSPEEDEKLYNHIIRHGVGCWSSVPRLAALNRCGKSCRLRWINYLRPDLKRG 70

Query: 70  MFSQQEQEKILTLHRLLGNRWSTIAQHLTGRTDNEIKNFWNSHLKKKVDN------TRNP 129
            FSQQE++ I+ LH++LGNRWS IA HL GRTDNEIKNFWNS +KKK+        T  P
Sbjct: 71  CFSQQEEDHIVALHQILGNRWSQIASHLPGRTDNEIKNFWNSCIKKKLRQQGIDPATHKP 130

Query: 130 VSSSYLKSRVFSKPDPPLEE 143
           ++S+   +   + PD   E+
Sbjct: 131 MASADTATAAAALPDAEEED 150

[Close]

BLAST of Spg002736 vs. ExPASy Swiss-Prot
Match: Q9C6U1 (Transcription factor MYB83 OS=Arabidopsis thaliana OX=3702 GN=MYB83 PE=2 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.5e-38
Identity = 77/118 (65.25%), Postives = 90/118 (76.27%), Query Frame = 0


Query: 10  KPK-KKGLWSPEEDEKLRSFILNNGHGCWTSVPIKAGLLRSSKSCRLRWINYLRPGLKKG 69
           KPK +KGLWSP+EDEKL  ++L NG GCW+ +   AGLLR  KSCRLRWINYLRP LK+G
Sbjct: 27  KPKLRKGLWSPDEDEKLIRYMLTNGQGCWSDIARNAGLLRCGKSCRLRWINYLRPDLKRG 86

Query: 70  MFSQQEQEKILTLHRLLGNRWSTIAQHLTGRTDNEIKNFWNSHLKKKVDNTRNPVSSS 127
            FS QE++ I  LH +LGNRWS IA  L GRTDNEIKNFWNS LKK++ N  N  +SS
Sbjct: 87  SFSPQEEDLIFHLHSILGNRWSQIATRLPGRTDNEIKNFWNSTLKKRLKNNSNNNTSS 144

[Close]

BLAST of Spg002736 vs. ExPASy Swiss-Prot
Match: Q8LPH6 (Transcription factor MYB86 OS=Arabidopsis thaliana OX=3702 GN=MYB86 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.6e-38
Identity = 78/124 (62.90%), Postives = 91/124 (73.39%), Query Frame = 0


Query: 13  KKGLWSPEEDEKLRSFILNNGHGCWTSVPIKAGLLRSSKSCRLRWINYLRPGLKKGMFSQ 72
           +KGLWSPEEDEKL ++I  +GHGCW+SVP  AGL R  KSCRLRWINYLRP LK+G FSQ
Sbjct: 13  RKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQ 72

Query: 73  QEQEKILTLHRLLGNRWSTIAQHLTGRTDNEIKNFWNSHLKKKV------DNTRNPVSSS 131
            E+  I+ LH  LGNRWS IA  L GRTDNEIKNFWNS LKKK+        T  P+ ++
Sbjct: 73  DEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKLRRKGIDPTTHKPLITN 132

[Close]

BLAST of Spg002736 vs. ExPASy Swiss-Prot
Match: Q8VZQ2 (Transcription factor MYB61 OS=Arabidopsis thaliana OX=3702 GN=MYB61 PE=2 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 9.7e-38
Identity = 87/208 (41.83%), Postives = 116/208 (55.77%), Query Frame = 0


Query: 13  KKGLWSPEEDEKLRSFILNNGHGCWTSVPIKAGLLRSSKSCRLRWINYLRPGLKKGMFSQ 72
           +KGLWSPEEDEKL + I N+GHGCW+SVP  AGL R  KSCRLRWINYLRP LK+G FS 
Sbjct: 13  RKGLWSPEEDEKLLTHITNHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSP 72

Query: 73  QEQEKILTLHRLLGNRWSTIAQHLTGRTDNEIKNFWNSHLKKKV------DNTRNPVSSS 132
           +E+  I+ LH +LGNRWS IA  L GRTDNEIKN WNS +KKK+       NT  P+S  
Sbjct: 73  EEENLIVELHAVLGNRWSQIASRLPGRTDNEIKNLWNSSIKKKLKQRGIDPNTHKPIS-- 132

Query: 133 YLKSRVFSKPDPPLEEMGSSEDEQRRSQPKILFAEWLSVIDNNGESSMEGSFDGEGRTSR 192
             +   FS  D P            +S              ++  ++ +  F        
Sbjct: 133 --EVESFSDKDKPTTSNNKRSGNDHKS-------------PSSSSATNQDFFLERPSDLS 192

Query: 193 EAYGFEMFNWDFDFEAQISDDFATCDQL 215
           + +GF+  N++ +    ++ D + C  +
Sbjct: 193 DYFGFQKLNFNSNLGLSVTTDSSLCSMI 203

[Close]

BLAST of Spg002736 vs. ExPASy TrEMBL
Match: A0A1S3AXV7 (transcription factor LAF1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484072 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.3e-85
Identity = 163/217 (75.12%), Postives = 174/217 (80.18%), Query Frame = 0


Query: 1   MGSAETEKEKPKKKGLWSPEEDEKLRSFILNNGHGCWTSVPIKAGLLRSSKSCRLRWINY 60
           MG  ETEKEK KKKGLWSPEEDEKLRSFIL NGHGCWTSVPIKAGLLR+SKSCRLRW NY
Sbjct: 36  MGCRETEKEKVKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNY 95

Query: 61  LRPGLKKGMFSQQEQEKILTLHRLLGNRWSTIAQHLTGRTDNEIKNFWNSHLKKKVDNTR 120
           LRPGLK+GMFSQQE EKILTLHRLLGNRWS IAQHL GRTDNEIKN+WNSHLKKKV + R
Sbjct: 96  LRPGLKRGMFSQQEDEKILTLHRLLGNRWSQIAQHLAGRTDNEIKNYWNSHLKKKVVSNR 155

Query: 121 NPVSSSYLKSRVFSKPDPPLEEMGSSEDEQRRSQPKILFAEWLSVIDNNGESSMEGSFDG 180
                           DPPLE MGSS  ++  ++P++LFAEWLSV D N  SSMEGSFDG
Sbjct: 156 ----------------DPPLEGMGSSGSKRSETRPRVLFAEWLSVSDINSGSSMEGSFDG 215

Query: 181 EGR--TSREAYGFEMFNWDFDFEAQISDDFATCDQLW 216
           EGR  TSRE YGFEM NWD DFE  ISD FATCD+LW
Sbjct: 216 EGRRTTSREGYGFEMLNWDLDFEGHISDGFATCDELW 236

[Close]

BLAST of Spg002736 vs. ExPASy TrEMBL
Match: A0A1S3AYA7 (transcription factor LAF1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103484072 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 1.2e-83
Identity = 163/223 (73.09%), Postives = 174/223 (78.03%), Query Frame = 0


Query: 1   MGSAETEKEKPKKKGLWSPEEDEKLRSFILNNGHGCWTSVPIKAGLLRSSKSCRLRWINY 60
           MG  ETEKEK KKKGLWSPEEDEKLRSFIL NGHGCWTSVPIKAGLLR+SKSCRLRW NY
Sbjct: 36  MGCRETEKEKVKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNY 95

Query: 61  LRPGLKKGMFSQQEQEKILTLHRLLGN------RWSTIAQHLTGRTDNEIKNFWNSHLKK 120
           LRPGLK+GMFSQQE EKILTLHRLLGN      RWS IAQHL GRTDNEIKN+WNSHLKK
Sbjct: 96  LRPGLKRGMFSQQEDEKILTLHRLLGNRMMISIRWSQIAQHLAGRTDNEIKNYWNSHLKK 155

Query: 121 KVDNTRNPVSSSYLKSRVFSKPDPPLEEMGSSEDEQRRSQPKILFAEWLSVIDNNGESSM 180
           KV + R                DPPLE MGSS  ++  ++P++LFAEWLSV D N  SSM
Sbjct: 156 KVVSNR----------------DPPLEGMGSSGSKRSETRPRVLFAEWLSVSDINSGSSM 215

Query: 181 EGSFDGEGR--TSREAYGFEMFNWDFDFEAQISDDFATCDQLW 216
           EGSFDGEGR  TSRE YGFEM NWD DFE  ISD FATCD+LW
Sbjct: 216 EGSFDGEGRRTTSREGYGFEMLNWDLDFEGHISDGFATCDELW 242

[Close]

BLAST of Spg002736 vs. ExPASy TrEMBL
Match: A0A1S3AYW8 (transcription factor LAF1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484072 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 1.2e-83
Identity = 163/223 (73.09%), Postives = 174/223 (78.03%), Query Frame = 0


Query: 1   MGSAETEKEKPKKKGLWSPEEDEKLRSFILNNGHGCWTSVPIKAGLLRSSKSCRLRWINY 60
           MG  ETEKEK KKKGLWSPEEDEKLRSFIL NGHGCWTSVPIKAGLLR+SKSCRLRW NY
Sbjct: 36  MGCRETEKEKVKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNY 95

Query: 61  LRPGLKKGMFSQQEQEKILTLHRLLGN------RWSTIAQHLTGRTDNEIKNFWNSHLKK 120
           LRPGLK+GMFSQQE EKILTLHRLLGN      RWS IAQHL GRTDNEIKN+WNSHLKK
Sbjct: 96  LRPGLKRGMFSQQEDEKILTLHRLLGNRMMISIRWSQIAQHLAGRTDNEIKNYWNSHLKK 155

Query: 121 KVDNTRNPVSSSYLKSRVFSKPDPPLEEMGSSEDEQRRSQPKILFAEWLSVIDNNGESSM 180
           KV + R                DPPLE MGSS  ++  ++P++LFAEWLSV D N  SSM
Sbjct: 156 KVVSNR----------------DPPLEGMGSSGSKRSETRPRVLFAEWLSVSDINSGSSM 215

Query: 181 EGSFDGEGR--TSREAYGFEMFNWDFDFEAQISDDFATCDQLW 216
           EGSFDGEGR  TSRE YGFEM NWD DFE  ISD FATCD+LW
Sbjct: 216 EGSFDGEGRRTTSREGYGFEMLNWDLDFEGHISDGFATCDELW 242

[Close]

BLAST of Spg002736 vs. ExPASy TrEMBL
Match: A0A1S3AY85 (transcription factor LAF1-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103484072 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.8e-82
Identity = 162/222 (72.97%), Postives = 173/222 (77.93%), Query Frame = 0


Query: 1   MGSAETEKEKPKKKGLWSPEEDEKLRSFILNNGHGCWTSVPIKAGLLRSSKSCRLRWINY 60
           MG  ETEKEK KKKGLWSPEEDEKLRSFIL NGHGCWTSVPIKAGLLR+SKSCRLRW NY
Sbjct: 36  MGCRETEKEKVKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNY 95

Query: 61  LRPGLKKGMFSQQEQEKILTLHRLLGN------RWSTIAQHLTGRTDNEIKNFWNSHLKK 120
           LRPGLK+GMFSQQE EKILTLHRLLGN      RWS IAQHL GRTDNEIKN+WNSHLKK
Sbjct: 96  LRPGLKRGMFSQQEDEKILTLHRLLGNRMMISIRWSQIAQHLAGRTDNEIKNYWNSHLKK 155

Query: 121 KVDNTRNPVSSSYLKSRVFSKPDPPLEEMGSSEDEQRRSQPKILFAEWLSVIDNNGESSM 180
           KV + R                DPPLE MGSS  ++  ++P++LFAEWLSV D N  SSM
Sbjct: 156 KVVSNR----------------DPPLEGMGSSGSKRSETRPRVLFAEWLSVSDINSGSSM 215

Query: 181 EGSFDGEGR--TSREAYGFEMFNWDFDFEAQISDDFATCDQL 215
           EGSFDGEGR  TSRE YGFEM NWD DFE  ISD FATCD+L
Sbjct: 216 EGSFDGEGRRTTSREGYGFEMLNWDLDFEGHISDGFATCDEL 241

[Close]

BLAST of Spg002736 vs. ExPASy TrEMBL
Match: A0A0A0L6I1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182040 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 3.1e-79
Identity = 153/194 (78.87%), Postives = 162/194 (83.51%), Query Frame = 0


Query: 23  EKLRSFILNNGHGCWTSVPIKAGLLRSSKSCRLRWINYLRPGLKKGMFSQQEQEKILTLH 82
           EKLRSFIL NGHGCWTSVPIKAGLLR+SKSCRLRW NYLRPGLK+GMFSQQE EKILTLH
Sbjct: 38  EKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNYLRPGLKRGMFSQQEDEKILTLH 97

Query: 83  RLLGNRWSTIAQHLTGRTDNEIKNFWNSHLKKKVDNTRNPVSSSYLKSRVFSKPDPPLEE 142
           RLLGNRWS IAQHL GRTDNEIKN+WNSHLKKKV      ++    KS VFS  DPPLEE
Sbjct: 98  RLLGNRWSQIAQHLAGRTDNEIKNYWNSHLKKKV-----VLNFQDFKSGVFSNRDPPLEE 157

Query: 143 MGSSEDEQRRSQPKILFAEWLSVIDNNGESSMEGSFDGEG--RTSREAYGFEMFNWDFDF 202
           MGSS +E+  SQP++LFAEWLSV D NG SSMEGSFDGEG  RTSRE YGFEM NWD DF
Sbjct: 158 MGSSGNERIESQPRVLFAEWLSVSDVNGGSSMEGSFDGEGRRRTSREGYGFEMLNWDLDF 217

Query: 203 EAQISDDFATCDQL 215
           E  ISD FATCDQL
Sbjct: 218 EGHISDGFATCDQL 226

[Close]

BLAST of Spg002736 vs. TAIR 10
Match: AT4G25560.1 (myb domain protein 18 )

HSP 1 Score: 175.6 bits (444), Expect = 4.2e-44
Identity = 99/193 (51.30%), Postives = 120/193 (62.18%), Query Frame = 0


Query: 4   AETEKEKPKKKGLWSPEEDEKLRSFILNNGHGCWTSVPIKAGLLRSSKSCRLRWINYLRP 63
           A+T+  +  +KGLWSPEEDEKLRSFIL+ GH CWT+VPIKAGL R+ KSCRLRWINYLRP
Sbjct: 2   AKTKYGERHRKGLWSPEEDEKLRSFILSYGHSCWTTVPIKAGLQRNGKSCRLRWINYLRP 61

Query: 64  GLKKGMFSQQEQEKILTLHRLLGNRWSTIAQHLTGRTDNEIKNFWNSHLKKK-------- 123
           GLK+ M S +E+E ILT H  LGN+WS IA+ L GRTDNEIKN+W+SHLKKK        
Sbjct: 62  GLKRDMISAEEEETILTFHSSLGNKWSQIAKFLPGRTDNEIKNYWHSHLKKKWLKSQSLQ 121

Query: 124 -VDNTRNPVSSS-------------YLKSRVFS-------KPDPPLEEMGSSEDEQRRSQ 165
              +   P SSS              + + VFS       K   P +E   +   Q  S 
Sbjct: 122 DAKSISPPSSSSSSLVACGKRNPETLISNHVFSFQRLLENKSSSPSQESNGNNSHQCSSA 181

[Close]

BLAST of Spg002736 vs. TAIR 10
Match: AT5G52260.1 (myb domain protein 19 )

HSP 1 Score: 171.0 bits (432), Expect = 1.0e-42
Identity = 78/113 (69.03%), Postives = 98/113 (86.73%), Query Frame = 0


Query: 3   SAETEKEKPKKKGLWSPEEDEKLRSFILNNGHGCWTSVPIKAGLLRSSKSCRLRWINYLR 62
           S E  K++ ++KGLWSPEED+KL+SFIL+ GH CWT+VPI AGL R+ KSCRLRWINYLR
Sbjct: 4   SGERPKQR-QRKGLWSPEEDQKLKSFILSRGHACWTTVPILAGLQRNGKSCRLRWINYLR 63

Query: 63  PGLKKGMFSQQEQEKILTLHRLLGNRWSTIAQHLTGRTDNEIKNFWNSHLKKK 116
           PGLK+G FS++E+E ILTLH  LGN+WS IA++L GRTDNEIKN+W+S+LKK+
Sbjct: 64  PGLKRGSFSEEEEETILTLHSSLGNKWSRIAKYLPGRTDNEIKNYWHSYLKKR 115

[Close]

BLAST of Spg002736 vs. TAIR 10
Match: AT3G48920.1 (myb domain protein 45 )

HSP 1 Score: 166.4 bits (420), Expect = 2.5e-41
Identity = 80/173 (46.24%), Postives = 117/173 (67.63%), Query Frame = 0


Query: 5   ETEKEKPKKKGLWSPEEDEKLRSFILNNGHGCWTSVPIKAGLLRSSKSCRLRWINYLRPG 64
           E + ++ ++KGLWSPEEDEKLRS +L  GHGCW+++P++AGL R+ KSCRLRW+NYLRPG
Sbjct: 11  EMKSKEKQRKGLWSPEEDEKLRSHVLKYGHGCWSTIPLQAGLQRNGKSCRLRWVNYLRPG 70

Query: 65  LKKGMFSQQEQEKILTLHRLLGNRWSTIAQHLTGRTDNEIKNFWNSHLKKKVDNTRNPVS 124
           LKK +F++QE+  +L+LH +LGN+WS I++ L GRTDNEIKN+W+S+LKK V   ++  +
Sbjct: 71  LKKSLFTKQEETILLSLHSMLGNKWSQISKFLPGRTDNEIKNYWHSNLKKGVTLKQHETT 130

Query: 125 SSYLKSRVFSKPDPPLEEMGSSEDEQRRS--------------QPKILFAEWL 164
             +    + +     LE + SS +    S               P ++F+EWL
Sbjct: 131 KKHQTPLITNS----LEALQSSTERSSSSINVGETSNAQTSSFSPNLVFSEWL 179

[Close]

BLAST of Spg002736 vs. TAIR 10
Match: AT3G08500.1 (myb domain protein 83 )

HSP 1 Score: 161.0 bits (406), Expect = 1.1e-39
Identity = 77/118 (65.25%), Postives = 90/118 (76.27%), Query Frame = 0


Query: 10  KPK-KKGLWSPEEDEKLRSFILNNGHGCWTSVPIKAGLLRSSKSCRLRWINYLRPGLKKG 69
           KPK +KGLWSP+EDEKL  ++L NG GCW+ +   AGLLR  KSCRLRWINYLRP LK+G
Sbjct: 27  KPKLRKGLWSPDEDEKLIRYMLTNGQGCWSDIARNAGLLRCGKSCRLRWINYLRPDLKRG 86

Query: 70  MFSQQEQEKILTLHRLLGNRWSTIAQHLTGRTDNEIKNFWNSHLKKKVDNTRNPVSSS 127
            FS QE++ I  LH +LGNRWS IA  L GRTDNEIKNFWNS LKK++ N  N  +SS
Sbjct: 87  SFSPQEEDLIFHLHSILGNRWSQIATRLPGRTDNEIKNFWNSTLKKRLKNNSNNNTSS 144

[Close]

BLAST of Spg002736 vs. TAIR 10
Match: AT5G26660.1 (myb domain protein 86 )

HSP 1 Score: 160.2 bits (404), Expect = 1.8e-39
Identity = 78/124 (62.90%), Postives = 91/124 (73.39%), Query Frame = 0


Query: 13  KKGLWSPEEDEKLRSFILNNGHGCWTSVPIKAGLLRSSKSCRLRWINYLRPGLKKGMFSQ 72
           +KGLWSPEEDEKL ++I  +GHGCW+SVP  AGL R  KSCRLRWINYLRP LK+G FSQ
Sbjct: 13  RKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQ 72

Query: 73  QEQEKILTLHRLLGNRWSTIAQHLTGRTDNEIKNFWNSHLKKKV------DNTRNPVSSS 131
            E+  I+ LH  LGNRWS IA  L GRTDNEIKNFWNS LKKK+        T  P+ ++
Sbjct: 73  DEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKLRRKGIDPTTHKPLITN 132

The following BLAST results are available for this feature:

BLAST of Spg002736 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652772.1	3.4e-88	79.17	LOW QUALITY PROTEIN: transcription factor LAF1 [Cucumis sativus]	[more]
XP_008439218.1	2.7e-85	75.12	PREDICTED: transcription factor LAF1-like isoform X2 [Cucumis melo]	[more]
XP_008439219.1	2.5e-83	73.09	PREDICTED: transcription factor LAF1-like isoform X3 [Cucumis melo]	[more]
XP_008439216.1	2.5e-83	73.09	PREDICTED: transcription factor LAF1-like isoform X1 [Cucumis melo]	[more]
XP_008439220.1	3.6e-82	72.97	PREDICTED: transcription factor LAF1-like isoform X4 [Cucumis melo]	[more]

BLAST of Spg002736 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M0K4	5.9e-43	51.30	Transcription factor LAF1 OS=Arabidopsis thaliana OX=3702 GN=LAF1 PE=1 SV=2	[more]
P20027	1.5e-38	57.86	Myb-related protein Hv33 OS=Hordeum vulgare OX=4513 GN=MYB2 PE=2 SV=3	[more]
Q9C6U1	1.5e-38	65.25	Transcription factor MYB83 OS=Arabidopsis thaliana OX=3702 GN=MYB83 PE=2 SV=1	[more]
Q8LPH6	2.6e-38	62.90	Transcription factor MYB86 OS=Arabidopsis thaliana OX=3702 GN=MYB86 PE=2 SV=1	[more]
Q8VZQ2	9.7e-38	41.83	Transcription factor MYB61 OS=Arabidopsis thaliana OX=3702 GN=MYB61 PE=2 SV=1	[more]

BLAST of Spg002736 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AXV7	1.3e-85	75.12	transcription factor LAF1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10348407...	[more]
A0A1S3AYA7	1.2e-83	73.09	transcription factor LAF1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC10348407...	[more]
A0A1S3AYW8	1.2e-83	73.09	transcription factor LAF1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348407...	[more]
A0A1S3AY85	1.8e-82	72.97	transcription factor LAF1-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC10348407...	[more]
A0A0A0L6I1	3.1e-79	78.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182040 PE=4 SV=1	[more]

BLAST of Spg002736 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25560.1	4.2e-44	51.30	myb domain protein 18	[more]
AT5G52260.1	1.0e-42	69.03	myb domain protein 19	[more]
AT3G48920.1	2.5e-41	46.24	myb domain protein 45	[more]
AT3G08500.1	1.1e-39	65.25	myb domain protein 83	[more]
AT5G26660.1	1.8e-39	62.90	myb domain protein 86	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 66..114 e-value: 9.1E-14 score: 61.7 coord: 13..63 e-value: 2.0E-10 score: 50.6
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 9..61 score: 9.918398
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 62..112 score: 10.069359
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 17..61 e-value: 6.49759E-8 score: 45.6442
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 70..112 e-value: 5.05542E-10 score: 51.4222
None	No IPR available	GENE3D	1.10.10.60		coord: 13..66 e-value: 1.6E-15 score: 58.8
None	No IPR available	GENE3D	1.10.10.60		coord: 69..132 e-value: 1.1E-19 score: 72.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..153
None	No IPR available	PANTHER	PTHR47997:SF11	MYB TRANSCRIPTION FACTOR	coord: 1..147
None	No IPR available	PANTHER	PTHR47997	MYB DOMAIN PROTEIN 55	coord: 1..147
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 67..112 e-value: 6.1E-14 score: 52.0 coord: 14..61 e-value: 4.2E-11 score: 42.9
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 62..116 score: 23.639038
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 9..61 score: 16.375931
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 11..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg002736.1	Spg002736.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000494	box C/D RNA 3'-end processing
biological_process	GO:1990258	histone glutamine methylation
biological_process	GO:0031167	rRNA methylation
cellular_component	GO:0031428	box C/D RNP complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0032040	small-subunit processome
molecular_function	GO:1990259	histone-glutamine methyltransferase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008649	rRNA methyltransferase activity