Spg002611 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg002611
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	B3 domain-containing transcription factor VRN1-like
Location	scaffold6: 3109794 .. 3110224 (+)
RNA-Seq Expression	Spg002611
Synteny	Spg002611

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGCTCCAAGCAGCCATCGAGACGCTGAAGACTCGAAATCCTTCATTCTTGGTGTCCATACATCATAGGAACATAGAGAAGTGCTACGCAGTGAAGCTCTATACTCTTCTATGTATAGTTAAGTGTACATTGGCAAATGAACTTGGCTTAATGCAAATTGTTTTGTGCAGTACATTCCTTCCAGTTTTGCCACCAAGTATCTGAGTAGCAAGAAAGAAATCGTCGAAATTCAAGACGGTTCCAAGGGGCGAAAATGGAAGATTGACTGCGACCGATCGGGATCGACGTCGAAGCGAATGGGAAGAGGATGGAGGGTGTTTTGCAGGGAAAACAATCTGAGAGCTGGAGATTTGGTTGTGTTTGAGCTTGTCAAGAGGAGCAACAACCGTGTGATGAAATTCACTGTGTTTTCTTCAGCTGCACTGTGA

mRNA sequence

ATGACGCTCCAAGCAGCCATCGAGACGCTGAAGACTCGAAATCCTTCATTCTTGTACATTCCTTCCAGTTTTGCCACCAAGTATCTGAGTAGCAAGAAAGAAATCGTCGAAATTCAAGACGGTTCCAAGGGGCGAAAATGGAAGATTGACTGCGACCGATCGGGATCGACGTCGAAGCGAATGGGAAGAGGATGGAGGGTGTTTTGCAGGGAAAACAATCTGAGAGCTGGAGATTTGGTTGTGTTTGAGCTTGTCAAGAGGAGCAACAACCGTGTGATGAAATTCACTGTGTTTTCTTCAGCTGCACTGTGA

Coding sequence (CDS)

ATGACGCTCCAAGCAGCCATCGAGACGCTGAAGACTCGAAATCCTTCATTCTTGTACATTCCTTCCAGTTTTGCCACCAAGTATCTGAGTAGCAAGAAAGAAATCGTCGAAATTCAAGACGGTTCCAAGGGGCGAAAATGGAAGATTGACTGCGACCGATCGGGATCGACGTCGAAGCGAATGGGAAGAGGATGGAGGGTGTTTTGCAGGGAAAACAATCTGAGAGCTGGAGATTTGGTTGTGTTTGAGCTTGTCAAGAGGAGCAACAACCGTGTGATGAAATTCACTGTGTTTTCTTCAGCTGCACTGTGA

Protein sequence

MTLQAAIETLKTRNPSFLYIPSSFATKYLSSKKEIVEIQDGSKGRKWKIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSNNRVMKFTVFSSAAL

Homology

[Close]

BLAST of Spg002611 vs. NCBI nr
Match: XP_022141112.1 (B3 domain-containing transcription factor VRN1-like [Momordica charantia])

HSP 1 Score: 132.5 bits (332), Expect = 2.1e-27
Identity = 69/114 (60.53%), Postives = 84/114 (73.68%), Query Frame = 0


Query: 1   MTLQAAIETLKTRNPSFL-------------YIPSSFATKYLSSKKEIVEIQDGSKGRKW 60
           M ++AA + LKT+NPSF+             YIPSSF+ KYLSSK EI+E+Q G +GRKW
Sbjct: 255 MAIRAATKKLKTKNPSFMVIMQKRNIEKTYVYIPSSFSNKYLSSKDEIIELQAGFEGRKW 314

Query: 61  KIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSNNRVMKFTVFSSA 102
           +I C  +G TSKRMGRGWR F RENNLRAGD++VFELV+RS   V+ FTVFSSA
Sbjct: 315 EIYCYGTGRTSKRMGRGWREFSRENNLRAGDVIVFELVERSRINVLDFTVFSSA 368

[Close]

BLAST of Spg002611 vs. NCBI nr
Match: KAA0044698.1 (B3 domain-containing transcription factor VRN1-like [Cucumis melo var. makuwa] >TYK16889.1 B3 domain-containing transcription factor VRN1-like [Cucumis melo var. makuwa])

HSP 1 Score: 110.9 bits (276), Expect = 6.5e-21
Identity = 61/108 (56.48%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 10  LKTRNPSFL-------------YIPSSFATKYLSSKKEIVEIQDGSKGR-KWKIDCDRSG 69
           +KT+NPSF+             YIPSSF  KYL  + EI+EIQ  S  R +W+I C   G
Sbjct: 211 IKTKNPSFMLIIEERNIKKRYAYIPSSFGKKYLGREDEIIEIQGSSSKRGRWEIQC--KG 270

Query: 70  STSKRMGRGWRVFCRENNLRAGDLVVFELVKRSNNRVMKFTVFSSAAL 104
             +KRMG GW VFC+E+NLR GD+VVFELVKRS NRVMKFTVF S A+
Sbjct: 271 WWAKRMGVGWSVFCKESNLRVGDVVVFELVKRSKNRVMKFTVFPSVAV 316

[Close]

BLAST of Spg002611 vs. NCBI nr
Match: XP_008453826.1 (PREDICTED: B3 domain-containing transcription factor VRN1-like [Cucumis melo])

HSP 1 Score: 110.9 bits (276), Expect = 6.5e-21
Identity = 61/108 (56.48%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 10  LKTRNPSFL-------------YIPSSFATKYLSSKKEIVEIQDGSKGR-KWKIDCDRSG 69
           +KT+NPSF+             YIPSSF  KYL  + EI+EIQ  S  R +W+I C   G
Sbjct: 258 IKTKNPSFMLIIEERNIKKRYAYIPSSFGKKYLGREDEIIEIQGSSSKRGRWEIQC--KG 317

Query: 70  STSKRMGRGWRVFCRENNLRAGDLVVFELVKRSNNRVMKFTVFSSAAL 104
             +KRMG GW VFC+E+NLR GD+VVFELVKRS NRVMKFTVF S A+
Sbjct: 318 WWAKRMGVGWSVFCKESNLRVGDVVVFELVKRSKNRVMKFTVFPSVAV 363

[Close]

BLAST of Spg002611 vs. NCBI nr
Match: XP_004146931.1 (B3 domain-containing protein At3g18960 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 6.1e-19
Identity = 60/114 (52.63%), Postives = 76/114 (66.67%), Query Frame = 0


Query: 4   QAAIETLKTRNPSFL-------------YIPSSFATKYLSSKKEIVEIQD-GSKGRKWKI 63
           +A  + +KT NPSF+             YIPSSF  KYLS + EI+EIQ   S+  +WKI
Sbjct: 235 EAKKKMMKTNNPSFMLIIEERNIKKNYAYIPSSFGKKYLSREDEIIEIQGRSSEQGRWKI 294

Query: 64  DCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSNNRVMKFTVFSSAAL 104
            C   G ++KRMG GW VF +E+NLR GD+VVFELVK + NRVMKFTVFSS ++
Sbjct: 295 WC--KGVSAKRMGVGWGVFRKESNLRVGDVVVFELVKMNKNRVMKFTVFSSGSI 346

[Close]

BLAST of Spg002611 vs. NCBI nr
Match: KGN53194.1 (hypothetical protein Csa_015033 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 6.1e-19
Identity = 60/114 (52.63%), Postives = 76/114 (66.67%), Query Frame = 0


Query: 4   QAAIETLKTRNPSFL-------------YIPSSFATKYLSSKKEIVEIQD-GSKGRKWKI 63
           +A  + +KT NPSF+             YIPSSF  KYLS + EI+EIQ   S+  +WKI
Sbjct: 201 EAKKKMMKTNNPSFMLIIEERNIKKNYAYIPSSFGKKYLSREDEIIEIQGRSSEQGRWKI 260

Query: 64  DCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSNNRVMKFTVFSSAAL 104
            C   G ++KRMG GW VF +E+NLR GD+VVFELVK + NRVMKFTVFSS ++
Sbjct: 261 WC--KGVSAKRMGVGWGVFRKESNLRVGDVVVFELVKMNKNRVMKFTVFSSGSI 312

[Close]

BLAST of Spg002611 vs. ExPASy Swiss-Prot
Match: Q8L3W1 (B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana OX=3702 GN=VRN1 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.3e-07
Identity = 32/81 (39.51%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 18  LYIPSSFATKYLSSKKEIVEIQDGSKGRKWKIDCDRSGSTSKRMGRGWRVFCRENNLRAG 77
           +Y+PS FA KYLS     +++Q   K  +W + C      +K   +GW  F  ENNL  G
Sbjct: 259 MYLPSGFAEKYLSGISGFIKVQLAEK--QWPVRCLYKAGRAK-FSQGWYEFTLENNLGEG 318

Query: 78  DLVVFELVKRSNNRVMKFTVF 99
           D+ VFEL+ R+ + V+K T F
Sbjct: 319 DVCVFELL-RTRDFVLKVTAF 335

[Close]

BLAST of Spg002611 vs. ExPASy Swiss-Prot
Match: Q9XIB5 (B3 domain-containing protein REM19 OS=Arabidopsis thaliana OX=3702 GN=REM19 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.5e-07
Identity = 31/81 (38.27%), Postives = 47/81 (58.02%), Query Frame = 0


Query: 18  LYIPSSFATKYLSSKKEIVEIQDGSKGRKWKIDCDRSGSTSKRMGRGWRVFCRENNLRAG 77
           +Y+PS FA KYLS     +++Q G K  +W + C      +K   +GW  F  ENN+  G
Sbjct: 144 MYLPSGFAEKYLSGISGFIKLQLGEK--QWPVRCLYKAGRAK-FSQGWYEFTLENNIGEG 203

Query: 78  DLVVFELVKRSNNRVMKFTVF 99
           D+ VFEL+ R+ + V++ T F
Sbjct: 204 DVCVFELL-RTRDFVLEVTAF 220

[Close]

BLAST of Spg002611 vs. ExPASy Swiss-Prot
Match: Q8GYM4 (B3 domain-containing protein REM14 OS=Arabidopsis thaliana OX=3702 GN=REM14 PE=2 SV=2)

HSP 1 Score: 50.8 bits (120), Expect = 1.0e-05
Identity = 26/77 (33.77%), Postives = 40/77 (51.95%), Query Frame = 0


Query: 18  LYIPSSFATKYLSSKKEIVEIQDGSKGRKWKIDCD-RSGSTSKRMGRGWRVFCRENNLRA 77
           LY+P  F  +    K+    I    KG+ W +D   +    +  + RGWR FC  N LRA
Sbjct: 251 LYLPKRFMRENGVDKRRGEMILMNEKGKSWTLDLKLKKSCGTSLIRRGWRSFCSANGLRA 310

Query: 78  GDLVVFELVKRSNNRVM 94
           G ++ F+L+K+S   V+
Sbjct: 311 GSIITFKLIKKSGTLVL 327

[Close]

BLAST of Spg002611 vs. ExPASy Swiss-Prot
Match: Q851V5 (Putative B3 domain-containing protein Os03g0621600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0621600 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.0e-05
Identity = 23/64 (35.94%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 24   FATKYLSSKKEIVEIQDGSKGRKWKIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFE 83
            +A  YL  K+  + +Q    G+ W++ C    + +KR+  GW  F +ENNL+ GD+ +FE
Sbjct: 955  YADVYLPFKELNMTLQ--RHGKNWEVLCRTKDTRTKRLSTGWSRFAQENNLQVGDICLFE 1014

Query: 84   LVKR 88
            L+K+
Sbjct: 1015 LLKK 1016

[Close]

BLAST of Spg002611 vs. ExPASy Swiss-Prot
Match: Q851V1 (Putative B3 domain-containing protein Os03g0621600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0621600 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-04
Identity = 26/79 (32.91%), Postives = 39/79 (49.37%), Query Frame = 0


Query: 15  PSFLYIPSSFATKYLSSKKEIVEIQDGSKGRKWKIDCDRSGSTSKRMGRGWRVFCRENNL 74
           P  + I   +A  YL  +   V +Q    G+ W + C  +   SKR  +GWR F  +N L
Sbjct: 222 PCTVEISKKYADVYLPFEDGTVVLQ--HHGKSWNVRCCLTKQNSKRFLKGWRQFAGDNKL 281

Query: 75  RAGDLVVFELVKRSNNRVM 94
             GD+ +F+L+K     VM
Sbjct: 282 HLGDICLFDLLKDKKKYVM 298

[Close]

BLAST of Spg002611 vs. ExPASy TrEMBL
Match: A0A6J1CIY2 (B3 domain-containing transcription factor VRN1-like OS=Momordica charantia OX=3673 GN=LOC111011585 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.0e-27
Identity = 69/114 (60.53%), Postives = 84/114 (73.68%), Query Frame = 0


Query: 1   MTLQAAIETLKTRNPSFL-------------YIPSSFATKYLSSKKEIVEIQDGSKGRKW 60
           M ++AA + LKT+NPSF+             YIPSSF+ KYLSSK EI+E+Q G +GRKW
Sbjct: 255 MAIRAATKKLKTKNPSFMVIMQKRNIEKTYVYIPSSFSNKYLSSKDEIIELQAGFEGRKW 314

Query: 61  KIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSNNRVMKFTVFSSA 102
           +I C  +G TSKRMGRGWR F RENNLRAGD++VFELV+RS   V+ FTVFSSA
Sbjct: 315 EIYCYGTGRTSKRMGRGWREFSRENNLRAGDVIVFELVERSRINVLDFTVFSSA 368

[Close]

BLAST of Spg002611 vs. ExPASy TrEMBL
Match: A0A5D3D2U2 (B3 domain-containing transcription factor VRN1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00210 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.1e-21
Identity = 61/108 (56.48%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 10  LKTRNPSFL-------------YIPSSFATKYLSSKKEIVEIQDGSKGR-KWKIDCDRSG 69
           +KT+NPSF+             YIPSSF  KYL  + EI+EIQ  S  R +W+I C   G
Sbjct: 211 IKTKNPSFMLIIEERNIKKRYAYIPSSFGKKYLGREDEIIEIQGSSSKRGRWEIQC--KG 270

Query: 70  STSKRMGRGWRVFCRENNLRAGDLVVFELVKRSNNRVMKFTVFSSAAL 104
             +KRMG GW VFC+E+NLR GD+VVFELVKRS NRVMKFTVF S A+
Sbjct: 271 WWAKRMGVGWSVFCKESNLRVGDVVVFELVKRSKNRVMKFTVFPSVAV 316

[Close]

BLAST of Spg002611 vs. ExPASy TrEMBL
Match: A0A1S3BY01 (B3 domain-containing transcription factor VRN1-like OS=Cucumis melo OX=3656 GN=LOC103494436 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.1e-21
Identity = 61/108 (56.48%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 10  LKTRNPSFL-------------YIPSSFATKYLSSKKEIVEIQDGSKGR-KWKIDCDRSG 69
           +KT+NPSF+             YIPSSF  KYL  + EI+EIQ  S  R +W+I C   G
Sbjct: 258 IKTKNPSFMLIIEERNIKKRYAYIPSSFGKKYLGREDEIIEIQGSSSKRGRWEIQC--KG 317

Query: 70  STSKRMGRGWRVFCRENNLRAGDLVVFELVKRSNNRVMKFTVFSSAAL 104
             +KRMG GW VFC+E+NLR GD+VVFELVKRS NRVMKFTVF S A+
Sbjct: 318 WWAKRMGVGWSVFCKESNLRVGDVVVFELVKRSKNRVMKFTVFPSVAV 363

[Close]

BLAST of Spg002611 vs. ExPASy TrEMBL
Match: A0A0A0KWD7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025730 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.9e-19
Identity = 60/114 (52.63%), Postives = 76/114 (66.67%), Query Frame = 0


Query: 4   QAAIETLKTRNPSFL-------------YIPSSFATKYLSSKKEIVEIQD-GSKGRKWKI 63
           +A  + +KT NPSF+             YIPSSF  KYLS + EI+EIQ   S+  +WKI
Sbjct: 201 EAKKKMMKTNNPSFMLIIEERNIKKNYAYIPSSFGKKYLSREDEIIEIQGRSSEQGRWKI 260

Query: 64  DCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSNNRVMKFTVFSSAAL 104
            C   G ++KRMG GW VF +E+NLR GD+VVFELVK + NRVMKFTVFSS ++
Sbjct: 261 WC--KGVSAKRMGVGWGVFRKESNLRVGDVVVFELVKMNKNRVMKFTVFSSGSI 312

[Close]

BLAST of Spg002611 vs. ExPASy TrEMBL
Match: A0A067LMY1 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_10020 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 9.5e-10
Identity = 43/116 (37.07%), Postives = 65/116 (56.03%), Query Frame = 0


Query: 4   QAAIET---LKTRNPSF-------------LYIPSSFATKYLSSKKEIVEIQDGSKGRKW 63
           Q AIE    LK +NPSF             LY+PS FA +YLS   + +++Q  S G++W
Sbjct: 360 QRAIEAARMLKPKNPSFMVLLRPYNCRNSILYVPSKFAKRYLSRGPKNIKLQ-VSDGKEW 419

Query: 64  KIDCDRSGSTSKRMGRGWRVFCRENNLRAGDLVVFELVKRSNNRVMKFTVFSSAAL 104
            +   + G     +G+GW++FCREN L  GD+ +FEL+   NN V+K  +F +  +
Sbjct: 420 AVCLLQQGYGRSLLGKGWKIFCRENTLEGGDVCLFELI---NNYVLKVFIFHAVEI 471

[Close]

BLAST of Spg002611 vs. TAIR 10
Match: AT3G18990.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 54.7 bits (130), Expect = 5.2e-08
Identity = 32/81 (39.51%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 18  LYIPSSFATKYLSSKKEIVEIQDGSKGRKWKIDCDRSGSTSKRMGRGWRVFCRENNLRAG 77
           +Y+PS FA KYLS     +++Q   K  +W + C      +K   +GW  F  ENNL  G
Sbjct: 259 MYLPSGFAEKYLSGISGFIKVQLAEK--QWPVRCLYKAGRAK-FSQGWYEFTLENNLGEG 318

Query: 78  DLVVFELVKRSNNRVMKFTVF 99
           D+ VFEL+ R+ + V+K T F
Sbjct: 319 DVCVFELL-RTRDFVLKVTAF 335

[Close]

BLAST of Spg002611 vs. TAIR 10
Match: AT1G49480.1 (related to vernalization1 1 )

HSP 1 Score: 54.3 bits (129), Expect = 6.7e-08
Identity = 31/81 (38.27%), Postives = 47/81 (58.02%), Query Frame = 0


Query: 18  LYIPSSFATKYLSSKKEIVEIQDGSKGRKWKIDCDRSGSTSKRMGRGWRVFCRENNLRAG 77
           +Y+PS FA KYLS     +++Q G K  +W + C      +K   +GW  F  ENN+  G
Sbjct: 144 MYLPSGFAEKYLSGISGFIKLQLGEK--QWPVRCLYKAGRAK-FSQGWYEFTLENNIGEG 203

Query: 78  DLVVFELVKRSNNRVMKFTVF 99
           D+ VFEL+ R+ + V++ T F
Sbjct: 204 DVCVFELL-RTRDFVLEVTAF 220

[Close]

BLAST of Spg002611 vs. TAIR 10
Match: AT2G24645.1 (Transcriptional factor B3 family protein )

HSP 1 Score: 50.8 bits (120), Expect = 7.4e-07
Identity = 26/77 (33.77%), Postives = 40/77 (51.95%), Query Frame = 0


Query: 18  LYIPSSFATKYLSSKKEIVEIQDGSKGRKWKIDCD-RSGSTSKRMGRGWRVFCRENNLRA 77
           LY+P  F  +    K+    I    KG+ W +D   +    +  + RGWR FC  N LRA
Sbjct: 251 LYLPKRFMRENGVDKRRGEMILMNEKGKSWTLDLKLKKSCGTSLIRRGWRSFCSANGLRA 310

Query: 78  GDLVVFELVKRSNNRVM 94
           G ++ F+L+K+S   V+
Sbjct: 311 GSIITFKLIKKSGTLVL 327

[Close]

BLAST of Spg002611 vs. TAIR 10
Match: AT2G24700.1 (Transcriptional factor B3 family protein )

HSP 1 Score: 49.3 bits (116), Expect = 2.2e-06
Identity = 31/80 (38.75%), Postives = 43/80 (53.75%), Query Frame = 0


Query: 18  LYIPSSFA-TKYLSSKKEIVEIQDGSKGRKWKIDCDRSGSTSKR--MGRGWRVFCRENNL 77
           LYIP  FA +  L +K +IV + +  +G  WKID  R      R  M RGWR FC  N  
Sbjct: 165 LYIPKEFALSNGLMNKYQIVLMNE--EGESWKIDLRREAYNYGRFYMRRGWRSFCIANGK 224

Query: 78  RAGDLVVFELVKRSNNRVMK 95
           + GD+  F+LVK     +++
Sbjct: 225 KPGDVFAFKLVKNEETPMIQ 242

The following BLAST results are available for this feature:

BLAST of Spg002611 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141112.1	2.1e-27	60.53	B3 domain-containing transcription factor VRN1-like [Momordica charantia]	[more]
KAA0044698.1	6.5e-21	56.48	B3 domain-containing transcription factor VRN1-like [Cucumis melo var. makuwa] >...	[more]
XP_008453826.1	6.5e-21	56.48	PREDICTED: B3 domain-containing transcription factor VRN1-like [Cucumis melo]	[more]
XP_004146931.1	6.1e-19	52.63	B3 domain-containing protein At3g18960 [Cucumis sativus]	[more]
KGN53194.1	6.1e-19	52.63	hypothetical protein Csa_015033 [Cucumis sativus]	[more]

BLAST of Spg002611 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L3W1	7.3e-07	39.51	B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9XIB5	9.5e-07	38.27	B3 domain-containing protein REM19 OS=Arabidopsis thaliana OX=3702 GN=REM19 PE=1...	[more]
Q8GYM4	1.0e-05	33.77	B3 domain-containing protein REM14 OS=Arabidopsis thaliana OX=3702 GN=REM14 PE=2...	[more]
Q851V5	3.0e-05	35.94	Putative B3 domain-containing protein Os03g0621600 OS=Oryza sativa subsp. japoni...	[more]
Q851V1	1.2e-04	32.91	Putative B3 domain-containing protein Os03g0621600 OS=Oryza sativa subsp. japoni...	[more]

BLAST of Spg002611 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CIY2	1.0e-27	60.53	B3 domain-containing transcription factor VRN1-like OS=Momordica charantia OX=36...	[more]
A0A5D3D2U2	3.1e-21	56.48	B3 domain-containing transcription factor VRN1-like OS=Cucumis melo var. makuwa ...	[more]
A0A1S3BY01	3.1e-21	56.48	B3 domain-containing transcription factor VRN1-like OS=Cucumis melo OX=3656 GN=L...	[more]
A0A0A0KWD7	2.9e-19	52.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025730 PE=4 SV=1	[more]
A0A067LMY1	9.5e-10	37.07	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_10020 PE=4 SV=1	[more]

BLAST of Spg002611 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18990.1	5.2e-08	39.51	AP2/B3-like transcriptional factor family protein	[more]
AT1G49480.1	6.7e-08	38.27	related to vernalization1 1	[more]
AT2G24645.1	7.4e-07	33.77	Transcriptional factor B3 family protein	[more]
AT2G24700.1	2.2e-06	38.75	Transcriptional factor B3 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003340	B3 DNA binding domain	SMART	SM01019	B3_2	coord: 9..101 e-value: 8.6E-16 score: 68.5
IPR003340	B3 DNA binding domain	PFAM	PF02362	B3	coord: 16..99 e-value: 7.8E-18 score: 64.2
IPR003340	B3 DNA binding domain	PROSITE	PS50863	B3	coord: 3..101 score: 15.269753
IPR003340	B3 DNA binding domain	CDD	cd10017	B3_DNA	coord: 16..99 e-value: 1.36343E-16 score: 66.9677
IPR015300	DNA-binding pseudobarrel domain superfamily	GENE3D	2.40.330.10		coord: 3..101 e-value: 2.1E-22 score: 81.1
IPR015300	DNA-binding pseudobarrel domain superfamily	SUPERFAMILY	101936	DNA-binding pseudobarrel domain	coord: 16..95
None	No IPR available	PANTHER	PTHR31920	B3 DOMAIN-CONTAINING	coord: 14..99
None	No IPR available	PANTHER	PTHR31920:SF51	B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1-LIKE	coord: 14..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg002611.1	Spg002611.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding