Spg002547 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg002547
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold6: 1617221 .. 1619243 (+)
RNA-Seq Expression	Spg002547
Synteny	Spg002547

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCGACACTCATCTCCCAAACCCACCGGAAAAGTGCTTTTCTTTAATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCACCACTTCCCGATTCGTCTCTGCCTTTTCTTTTAAACCTAGAGCCATGGACTCTCACGTGCAATTCAGCCAAACGGGGCCGTTTTGGACCAATGAGAAGCACATGCACTTCTTGAATTCCATGGAAGCTTCTTTTGTCCGATCAATGTTCCAAAATCGCCTCCATCATCGCCGCCGTCTGCGCCTGGACCGCCTCCTGCCGGACACCGCCGACTCAACCCTAGATTCGCCTCACAAGGACACAAAAAACCATACTACCTCCGGTGAGTTTAACCTTACGGTTTTCCCCAGTCATTTTCTAGGTCTTTAAGTCAAAAAATAACATAAAATAAAATAAAATAAAAATGCTTTAATAATAGGCTAAAAAGGACCAACCATTCAACGAAGCAGGGCCTAAACAATACGATAAAATTGGGAATAGTGAATATTCCTTACGAAGATATTTATGTGATTAAATATATATCACAATAAAAATCACTTTCCTTTCGCTCCAAAAAGATCATTAATATTCTTTTCCTTTCTGGTTTTTCTTGCATTTTCTTTTTTATTTTTCTTTTTTTGGTTATTAACTTTTGGCTGTGATCCAGGAGGTGGCAGAATCGACGGTAGATCTAGCAGGAGATCGAGGAGGATATCATCTCTACCGCACACTTCAATTCAAGATCAGGTCAGAAAGAAGAGACCCTATAACATTACATTTCTTATTTCTTTCTTTTTTCTCTACCAATAATGGAAATTAAATATCAAAATATATATTTAGCAAATTTTGCTTTTATAACATTTTTGTCTTTATCTCCTTTTGATCTAATTTTTTTACATCAAAATTATGCTCTTTTTGCGGCTGGTGTGGGTGTTTGTTGTCATGCCACGTGGAGCTGAATGCTAATTAAAAAATGATCATACTGTAATTAATTAAGCATAGTTTTCTGGCCATACTGTGATAGAAGAGAGATTAGGGGTTTTAAATTTTAATATCAATCTTTTAAAAAATATATATATTTATATACTTACGTAATTTAACGAGTTGAAAAGAAAAAAGAAATTGTTCCCATAATATCACGTGTTCTAATGCTGCATATTTATTTCAAATTATACAAATATTGTTTGTATTTTTTTTTTTTTAGCTGTAGACTTTGTTTTTTGAGTGCAAACAAGTTATCATTTTAGGTTTAATTGACATTTCATATAAACTTAATAAAATTTTACTAAAATAGAGGGACTAAAGTGAAAATTTTTGACATACAATAGAAGAAAGTTTCTATAATAAAACATCTAAGTGGCAAAACAAATATAATTTAATTTTTTAATCTATAGTATTTATTCATATGCAACCCTTGATTAGTTCTATGTCTGAATTTTATTATTAAAATAAAACACAAGAAAAATATCTCCTTCAATAATTAAAAGAACCTCATCCATGATCACTATCTTAGTATCTTATAAATTAATATAGTGATCATGTGCCATTTTTTTTTTTAAAAAAAAATCTTATACATTAATAACTTAGAAAAATAATATATTTTTCAACAAATTAATTAAAAATAAAATGGCATTCTTGTGTGATCTGACAGGTGGTCCCACAAATGGAAAAGAGAGCAGTTGAGGATGAAGATGAGAGAGACCATCCCATGTCACCTGTCAACTGAGAAATATTATATTGTTATTTTTCTGCAATTTTTTTTTTTTTTTTCACTTTGTTTCTTCTTTTAATCTTTATGTCATTTCAGCTTAGTCTGTTAAATCTAAATTAATGATGGTGTGGAAAAGGGTTTAATTGGAAATTAGTGAATTTAATTGGGTGGAAGGATTAATTTTTGGCTACCCTAAGGTAGATTAGACATCACTCATTGCAGGTTTTACTTTAATTGTATATTATTATAATTTTTTTTTTTTTGGTTTTATATATGTAAATCACAAATGTTGGTAGTTAGTAGTGACTACCAT

mRNA sequence

ATGGACTCTCACGTGCAATTCAGCCAAACGGGGCCGTTTTGGACCAATGAGAAGCACATGCACTTCTTGAATTCCATGGAAGCTTCTTTTGTCCGATCAATGTTCCAAAATCGCCTCCATCATCGCCGCCGTCTGCGCCTGGACCGCCTCCTGCCGGACACCGCCGACTCAACCCTAGATTCGCCTCACAAGGACACAAAAAACCATACTACCTCCGGAGGTGGCAGAATCGACGGTAGATCTAGCAGGAGATCGAGGAGGATATCATCTCTACCGCACACTTCAATTCAAGATCAGGTGGTCCCACAAATGGAAAAGAGAGCAGTTGAGGATGAAGATGAGAGAGACCATCCCATGTCACCTGTCAACTGA

Coding sequence (CDS)

ATGGACTCTCACGTGCAATTCAGCCAAACGGGGCCGTTTTGGACCAATGAGAAGCACATGCACTTCTTGAATTCCATGGAAGCTTCTTTTGTCCGATCAATGTTCCAAAATCGCCTCCATCATCGCCGCCGTCTGCGCCTGGACCGCCTCCTGCCGGACACCGCCGACTCAACCCTAGATTCGCCTCACAAGGACACAAAAAACCATACTACCTCCGGAGGTGGCAGAATCGACGGTAGATCTAGCAGGAGATCGAGGAGGATATCATCTCTACCGCACACTTCAATTCAAGATCAGGTGGTCCCACAAATGGAAAAGAGAGCAGTTGAGGATGAAGATGAGAGAGACCATCCCATGTCACCTGTCAACTGA

Protein sequence

MDSHVQFSQTGPFWTNEKHMHFLNSMEASFVRSMFQNRLHHRRRLRLDRLLPDTADSTLDSPHKDTKNHTTSGGGRIDGRSSRRSRRISSLPHTSIQDQVVPQMEKRAVEDEDERDHPMSPVN

Homology

[Close]

BLAST of Spg002547 vs. NCBI nr
Match: XP_038882732.1 (uncharacterized protein LOC120073889 isoform X1 [Benincasa hispida])

HSP 1 Score: 212.6 bits (540), Expect = 1.9e-51
Identity = 109/124 (87.90%), Postives = 115/124 (92.74%), Query Frame = 0


Query: 1   MDSHVQFSQTGPFWTNEKHMHFLNSMEASFVRSMFQNRLHHRRRLRLDRLLPDTADSTLD 60
           M+SHVQFS+TGPFWTNEKHMHFLNSMEASFV+SMF+NR HHRRRLRLDR LPDTADSTLD
Sbjct: 1   MESHVQFSETGPFWTNEKHMHFLNSMEASFVQSMFENRNHHRRRLRLDRHLPDTADSTLD 60

Query: 61  SPHK-DTKNHTTSGGGRIDGRSSRRSRRISSLPHTSIQDQVVPQMEKRAVEDEDERDHPM 120
           SP K DTKNH TS   RI+GRSSRRSRRISSLPHTS QDQVVPQ+EKRAVEDEDERDHPM
Sbjct: 61  SPQKDDTKNHATSEAVRINGRSSRRSRRISSLPHTSTQDQVVPQIEKRAVEDEDERDHPM 120

Query: 121 SPVN 124
           SPVN
Sbjct: 121 SPVN 124

[Close]

BLAST of Spg002547 vs. NCBI nr
Match: XP_038882735.1 (uncharacterized protein LOC120073889 isoform X2 [Benincasa hispida])

HSP 1 Score: 209.1 bits (531), Expect = 2.1e-50
Identity = 109/124 (87.90%), Postives = 115/124 (92.74%), Query Frame = 0


Query: 1   MDSHVQFSQTGPFWTNEKHMHFLNSMEASFVRSMFQNRLHHRRRLRLDRLLPDTADSTLD 60
           M+SHVQFS+TGPFWTNEKHMHFLNSMEASFV+SMF+NR HHRRRLRLDR LPDTADSTLD
Sbjct: 1   MESHVQFSETGPFWTNEKHMHFLNSMEASFVQSMFENRNHHRRRLRLDRHLPDTADSTLD 60

Query: 61  SPHK-DTKNHTTSGGGRIDGRSSRRSRRISSLPHTSIQDQVVPQMEKRAVEDEDERDHPM 120
           SP K DTKNH TS   RI+GRSSRRSRRISSLPHTS QDQVVPQ+EKRAVEDEDERDHPM
Sbjct: 61  SPQKDDTKNHATS-AVRINGRSSRRSRRISSLPHTSTQDQVVPQIEKRAVEDEDERDHPM 120

Query: 121 SPVN 124
           SPVN
Sbjct: 121 SPVN 123

[Close]

BLAST of Spg002547 vs. NCBI nr
Match: XP_004140781.1 (uncharacterized protein LOC101217506 [Cucumis sativus] >KGN57360.1 hypothetical protein Csa_009764 [Cucumis sativus])

HSP 1 Score: 206.1 bits (523), Expect = 1.8e-49
Identity = 105/123 (85.37%), Postives = 112/123 (91.06%), Query Frame = 0


Query: 1   MDSHVQFSQTGPFWTNEKHMHFLNSMEASFVRSMFQNRLHHRRRLRLDRLLPDTADSTLD 60
           M+SHVQF+QTGP WTNEKHMHFLNS+EASFVRSMFQNR  HRR LRLDRLLPDTADSTLD
Sbjct: 1   MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRA-HRRGLRLDRLLPDTADSTLD 60

Query: 61  SPHKDTKNHTTSGGGRIDGRSSRRSRRISSLPHTSIQDQVVPQMEKRAVEDEDERDHPMS 120
           SPH  TKNH TSG  RI+GRS+RRSRRISS P+TS QDQVVPQMEKRAVEDEDERDHPMS
Sbjct: 61  SPHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQVVPQMEKRAVEDEDERDHPMS 120

Query: 121 PVN 124
           P+N
Sbjct: 121 PLN 122

[Close]

BLAST of Spg002547 vs. NCBI nr
Match: XP_022141184.1 (uncharacterized protein LOC111011640 [Momordica charantia])

HSP 1 Score: 202.6 bits (514), Expect = 2.0e-48
Identity = 102/123 (82.93%), Postives = 108/123 (87.80%), Query Frame = 0


Query: 1   MDSHVQFSQTGPFWTNEKHMHFLNSMEASFVRSMFQNRLHHRRRLRLDRLLPDTADSTLD 60
           M+SHVQF++TG  WTNEKHMHFLNSMEASFVRSMF+NR H RRRLRLDR LPDT+DSTLD
Sbjct: 27  MESHVQFNETGSCWTNEKHMHFLNSMEASFVRSMFENRTHRRRRLRLDRHLPDTSDSTLD 86

Query: 61  SPHKDTKNHTTSGGGRIDGRSSRRSRRISSLPHTSIQDQVVPQMEKRAVEDEDERDHPMS 120
           SP KD KNH TSG   IDGRSS RSR  SSLPHTS QDQVVPQMEKRAVEDEDERDHPMS
Sbjct: 87  SPQKDRKNHATSGAATIDGRSSSRSRTRSSLPHTSNQDQVVPQMEKRAVEDEDERDHPMS 146

Query: 121 PVN 124
           P+N
Sbjct: 147 PIN 149

[Close]

BLAST of Spg002547 vs. NCBI nr
Match: XP_023552558.1 (uncharacterized protein LOC111810184 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 201.1 bits (510), Expect = 5.7e-48
Identity = 104/123 (84.55%), Postives = 112/123 (91.06%), Query Frame = 0


Query: 1   MDSHVQFSQTGPFWTNEKHMHFLNSMEASFVRSMFQNRLHHRRRLRLDRLLPDTADSTLD 60
           M+SHVQFS+T PFWTNEKHMHFLNSMEASFVRSMF+NR +HRR LRLDR L DTADSTLD
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNR-NHRRLLRLDRHLSDTADSTLD 60

Query: 61  SPHKDTKNHTTSGGGRIDGRSSRRSRRISSLPHTSIQDQVVPQMEKRAVEDEDERDHPMS 120
           SPHK+ K H+ S G R+DGRSSRRSRRI SLPHTSIQDQVVPQME+RAVEDEDERDHPMS
Sbjct: 61  SPHKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMS 120

Query: 121 PVN 124
           PVN
Sbjct: 121 PVN 122

[Close]

BLAST of Spg002547 vs. ExPASy TrEMBL
Match: A0A0A0L5V0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G181960 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 8.6e-50
Identity = 105/123 (85.37%), Postives = 112/123 (91.06%), Query Frame = 0


Query: 1   MDSHVQFSQTGPFWTNEKHMHFLNSMEASFVRSMFQNRLHHRRRLRLDRLLPDTADSTLD 60
           M+SHVQF+QTGP WTNEKHMHFLNS+EASFVRSMFQNR  HRR LRLDRLLPDTADSTLD
Sbjct: 1   MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRA-HRRGLRLDRLLPDTADSTLD 60

Query: 61  SPHKDTKNHTTSGGGRIDGRSSRRSRRISSLPHTSIQDQVVPQMEKRAVEDEDERDHPMS 120
           SPH  TKNH TSG  RI+GRS+RRSRRISS P+TS QDQVVPQMEKRAVEDEDERDHPMS
Sbjct: 61  SPHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQVVPQMEKRAVEDEDERDHPMS 120

Query: 121 PVN 124
           P+N
Sbjct: 121 PLN 122

[Close]

BLAST of Spg002547 vs. ExPASy TrEMBL
Match: A0A6J1CHV7 (uncharacterized protein LOC111011640 OS=Momordica charantia OX=3673 GN=LOC111011640 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 9.5e-49
Identity = 102/123 (82.93%), Postives = 108/123 (87.80%), Query Frame = 0


Query: 1   MDSHVQFSQTGPFWTNEKHMHFLNSMEASFVRSMFQNRLHHRRRLRLDRLLPDTADSTLD 60
           M+SHVQF++TG  WTNEKHMHFLNSMEASFVRSMF+NR H RRRLRLDR LPDT+DSTLD
Sbjct: 27  MESHVQFNETGSCWTNEKHMHFLNSMEASFVRSMFENRTHRRRRLRLDRHLPDTSDSTLD 86

Query: 61  SPHKDTKNHTTSGGGRIDGRSSRRSRRISSLPHTSIQDQVVPQMEKRAVEDEDERDHPMS 120
           SP KD KNH TSG   IDGRSS RSR  SSLPHTS QDQVVPQMEKRAVEDEDERDHPMS
Sbjct: 87  SPQKDRKNHATSGAATIDGRSSSRSRTRSSLPHTSNQDQVVPQMEKRAVEDEDERDHPMS 146

Query: 121 PVN 124
           P+N
Sbjct: 147 PIN 149

[Close]

BLAST of Spg002547 vs. ExPASy TrEMBL
Match: A0A6J1JBA6 (uncharacterized protein LOC111482903 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482903 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 8.0e-48
Identity = 103/123 (83.74%), Postives = 112/123 (91.06%), Query Frame = 0


Query: 1   MDSHVQFSQTGPFWTNEKHMHFLNSMEASFVRSMFQNRLHHRRRLRLDRLLPDTADSTLD 60
           M+SHVQFS+T PFWTNEKHMHFLNSMEASFVRSMF+NR +HRRRLRLDR L DTADSTLD
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNR-NHRRRLRLDRHLSDTADSTLD 60

Query: 61  SPHKDTKNHTTSGGGRIDGRSSRRSRRISSLPHTSIQDQVVPQMEKRAVEDEDERDHPMS 120
           SP K+ K H+ S G R+DGRSSRRSRRI SLPHTSIQDQVVPQME+RAVEDEDERDHP+S
Sbjct: 61  SPQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLS 120

Query: 121 PVN 124
           PVN
Sbjct: 121 PVN 122

[Close]

BLAST of Spg002547 vs. ExPASy TrEMBL
Match: A0A1S3AYV4 (uncharacterized protein LOC103484063 OS=Cucumis melo OX=3656 GN=LOC103484063 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 3.1e-47
Identity = 102/123 (82.93%), Postives = 110/123 (89.43%), Query Frame = 0


Query: 1   MDSHVQFSQTGPFWTNEKHMHFLNSMEASFVRSMFQNRLHHRRRLRLDRLLPDTADSTLD 60
           M+SHVQF+QTGP WTNEKHMHFLNSMEASFVRSMFQNR  HRRRLRLDRLLPDTADSTLD
Sbjct: 1   MESHVQFTQTGPSWTNEKHMHFLNSMEASFVRSMFQNRA-HRRRLRLDRLLPDTADSTLD 60

Query: 61  SPHKDTKNHTTSGGGRIDGRSSRRSRRISSLPHTSIQDQVVPQMEKRAVEDEDERDHPMS 120
           SP   TKNH TSG  R++GRS+RRSRR SS P++S QDQVVPQMEK AVEDEDERDHPMS
Sbjct: 61  SPLNHTKNHPTSGSARMNGRSTRRSRRTSSPPYSSTQDQVVPQMEKIAVEDEDERDHPMS 120

Query: 121 PVN 124
           P+N
Sbjct: 121 PLN 122

[Close]

BLAST of Spg002547 vs. ExPASy TrEMBL
Match: A0A6J1E5I2 (uncharacterized protein LOC111430892 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430892 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 5.2e-47
Identity = 102/123 (82.93%), Postives = 112/123 (91.06%), Query Frame = 0


Query: 1   MDSHVQFSQTGPFWTNEKHMHFLNSMEASFVRSMFQNRLHHRRRLRLDRLLPDTADSTLD 60
           M+SHVQFS+T PFWTNEKHMHFLNSMEASFVRSMF+NR ++RRRL+LDR L DTADSTLD
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNR-NYRRRLQLDRHLSDTADSTLD 60

Query: 61  SPHKDTKNHTTSGGGRIDGRSSRRSRRISSLPHTSIQDQVVPQMEKRAVEDEDERDHPMS 120
           SP K+ K H+ S G R+DGRSSRRSRRI SLPHTSIQDQVVPQME+RAVEDEDERDHPMS
Sbjct: 61  SPQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMS 120

Query: 121 PVN 124
           PVN
Sbjct: 121 PVN 122

The following BLAST results are available for this feature:

BLAST of Spg002547 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882732.1	1.9e-51	87.90	uncharacterized protein LOC120073889 isoform X1 [Benincasa hispida]	[more]
XP_038882735.1	2.1e-50	87.90	uncharacterized protein LOC120073889 isoform X2 [Benincasa hispida]	[more]
XP_004140781.1	1.8e-49	85.37	uncharacterized protein LOC101217506 [Cucumis sativus] >KGN57360.1 hypothetical ...	[more]
XP_022141184.1	2.0e-48	82.93	uncharacterized protein LOC111011640 [Momordica charantia]	[more]
XP_023552558.1	5.7e-48	84.55	uncharacterized protein LOC111810184 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Spg002547 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg002547 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5V0	8.6e-50	85.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G181960 PE=4 SV=1	[more]
A0A6J1CHV7	9.5e-49	82.93	uncharacterized protein LOC111011640 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1JBA6	8.0e-48	83.74	uncharacterized protein LOC111482903 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A1S3AYV4	3.1e-47	82.93	uncharacterized protein LOC103484063 OS=Cucumis melo OX=3656 GN=LOC103484063 PE=...	[more]
A0A6J1E5I2	5.2e-47	82.93	uncharacterized protein LOC111430892 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Spg002547 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..71
None	No IPR available	PANTHER	PTHR33676:SF15	SUBFAMILY NOT NAMED	coord: 1..117
IPR044678	Cold-regulated protein 27/28	PANTHER	PTHR33676	COLD REGULATED PROTEIN 27	coord: 1..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg002547.1	Spg002547.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042752	regulation of circadian rhythm
biological_process	GO:0009409	response to cold