Spg002507 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg002507
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold6: 2402869 .. 2404593 (+)
RNA-Seq ExpressionSpg002507
SyntenySpg002507
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAGATAACATAAAAATTGTTTTCTTTGATTACCTTTTTAATTTCTTCAAGGTTTTGATTCATATAATCTTGAAAGTGAAGCCCTTGCTCTGCAAGTTTGTTGAGTTTATATACGCCAAACAAAGTCTCGCCATTAACAGAGCTTGAGCTTTTTGCACAAACAAAAATGGCTTCCACCACAGCTTGGAAGATTGTCTTCTTTGCTTTGCTTCTCCTTGCCTTCAGCGTTTCTGCAAGAAATCTTGTTGAAACCAATTATGTAATGTCTCGCAAAGCTCGTAAGTTTTCTCTTCCCCTCATGCCCTTTTAGATGATCAATTTAGAAACAATAATAAAGCAATAAGTTAATTGTCCCTAATTCACCTTAAGGATTGTGTCTATTAATCCTCCTACTTTGAAAGTCTCTTTTTTTTCTAATAAACCTCCAAACTTTTAGTCCTTGAACTAGGAAAATATAATAAAAGAATGGTTAAATTATAAGTTTGTGTCCCTGACACTTTTAAGATCGTGTCTATCAGTCATCATACTTTAATTTTTCTTTCTACTAAGGCTATGAATTTTTAGTCTTTGAATTTTTTTTTGGATAAAGGATACTTTTAGTCCTTGAACTTTTAAATACTTTGTTAGGCCGGTAAACTTTCAATTTTTTGTTTGAAAGAATTTTATCTATCTGAAATTGACCTGCCATGTAATCCTTAAAATAATATGTATGGGGTACGTGGAATTAAATTGATGACACTATTGATGAAGACTTATTAGACACAAAATTTAATTCTAAAATTTACCTACTATGTAATTCTTAAATAATATATACCAAGTGTGCTATGTAAAGCAATAAATTGATAGAGTTGATCTCTTTCAAAAAAAAAAAAAGTTGATAGAGTTGATGATAGAAGCATGTTAGGCAAGAAATTGAAGGGTCGAGGGCTTATTAAAAATTTTGTAGTAGATAGATGACTAAAAATTGATACAATCTGAACTCCATTTGATAACCATTTTGATTTTTTTTTTTTTTTTTTTTTTTGGTTTATGGTTTTTGAAGATTATGTTTGTTGTCTCACATTTTCCTAATAATGTTTTTATTTTATTATTATTATTTTTAGATCTAATAGTTTTCATCTTTTGCTAAACAAACATTTGAATTCTTAGTCAAATTCTGAAAAAAAAAAAAAAAAAAAAAACAAATTTTTGAAATTCTTTTTTTTGGTTTGCAAAACTTGACTTGGTTTTTTAAAACAAGAAAAGAAACTTTAAGAAGGTAGAAGTACTGATTATAAGCTTGATCTTTTTAGGGGTTGAAATCATCATAATTTAACTTTAATTTTCTTTGAATTCAAAAAATAGAGCTTCCAAACTTTGGAAATTTTGTCTACAGGTGAAACGGCGGTGGATATAAATGATCATGAGAGGAGGATGAGATTATTTAATCAAGTGCTGGATAACGCTTGGAAGGGACACTACCATCCTCCCCCATAAAGTTCAACGACGAACCTTGAATCTTCCATTGTGTATAATTTTCTTAATGGTAGGGAATTTGGGAGAATAATTTTCAAAAACCAAATAGTTATCAAACGGGGCCTTACTTGTTTGTGTTTATCATATTTAATTATGTAAAAGTAATATTATATTTTTCTTTTTATGCAAAAGGATTTCGATTTTGATTTCTCCCAATGATGTTCGTCCATGAAATGTTACGGGATTTGTGAAAAATAAAATGAGGCCCT

mRNA sequence

ATGGCTTCCACCACAGCTTGGAAGATTGTCTTCTTTGCTTTGCTTCTCCTTGCCTTCAGCGTTTCTGCAAGAAATCTTGTTGAAACCAATTATGTAATGTCTCGCAAAGCTCGTGAAACGGCGGTGGATATAAATGATCATGAGAGGAGGATGAGATTATTTAATCAAGTGCTGGATAACGCTTGGAAGGGACACTACCATCCTCCCCCATAA

Coding sequence (CDS)

ATGGCTTCCACCACAGCTTGGAAGATTGTCTTCTTTGCTTTGCTTCTCCTTGCCTTCAGCGTTTCTGCAAGAAATCTTGTTGAAACCAATTATGTAATGTCTCGCAAAGCTCGTGAAACGGCGGTGGATATAAATGATCATGAGAGGAGGATGAGATTATTTAATCAAGTGCTGGATAACGCTTGGAAGGGACACTACCATCCTCCCCCATAA

Protein sequence

MASTTAWKIVFFALLLLAFSVSARNLVETNYVMSRKARETAVDINDHERRMRLFNQVLDNAWKGHYHPPP
Homology
[Close]
BLAST of Spg002507 vs. NCBI nr
Match: KAG6600178.1 (hypothetical protein SDJN03_05411, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.8 bits (133), Expect = 1.7e-04
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 0 

Query: 1  MASTTA---WK-IVFFALLLLAFSVSARNLVETNYVMSRKARETAVDINDHERRMRLFNQ 60
          MAS +A   WK +VFFALLLLAF+VSAR LV TN +++R   E  ++ N      RL  +
Sbjct: 1  MASPSAFVPWKEVVFFALLLLAFNVSARELVGTN-IVARTVHEMTIETNVGR---RLIAR 60

Query: 61 VLDNAWKGHYHPPP 71
           LD +W G+Y PPP
Sbjct: 61 QLDTSWGGNYSPPP 70

[Close]
BLAST of Spg002507 vs. NCBI nr
Match: KAG7030841.1 (hypothetical protein SDJN02_04878 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 55.8 bits (133), Expect = 1.7e-04
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 0 

Query: 1  MASTTA---WK-IVFFALLLLAFSVSARNLVETNYVMSRKARETAVDINDHERRMRLFNQ 60
          MAS +A   WK +VFFALLLLAF+VSAR LV TN +++R   E  ++ N      RL  +
Sbjct: 1  MASPSAFVPWKEVVFFALLLLAFNVSARELVGTN-IVARTVHEMTIETNVGR---RLIAR 60

Query: 61 VLDNAWKGHYHPPP 71
           LD +W G+Y PPP
Sbjct: 61 QLDTSWGGNYSPPP 70

[Close]
BLAST of Spg002507 vs. NCBI nr
Match: KAG6576804.1 (hypothetical protein SDJN03_24378, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 53.9 bits (128), Expect = 6.4e-04
Identity = 37/74 (50.00%), Postives = 43/74 (58.11%), Query Frame = 0 

Query: 1  MASTT---AW-KIVFFALLLLAFSVSARNLVETNYVMSRKARETAVDINDHERRMRLFNQ 60
          MAS T   AW K+ F   LL+A SVSAR L   N V++R ARE A   N      RL  +
Sbjct: 1  MASPTALVAWKKVAFLGFLLIAVSVSARELAGAN-VVTRTAREMATMPNGVIGGSRLIAR 60

Query: 61 VLDNAWKGHYHPPP 71
           LD AW+GHY PPP
Sbjct: 61 QLDTAWRGHYSPPP 73

[Close]
BLAST of Spg002507 vs. NCBI nr
Match: KAG7014831.1 (hypothetical protein SDJN02_22460, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 53.5 bits (127), Expect = 8.4e-04
Identity = 37/74 (50.00%), Postives = 43/74 (58.11%), Query Frame = 0 

Query: 1  MASTT---AW-KIVFFALLLLAFSVSARNLVETNYVMSRKARETAVDINDHERRMRLFNQ 60
          MAS T   AW K+ F   LL+A SVSAR L   N V++R ARE A   N      RL  +
Sbjct: 1  MASPTALVAWKKVAFLGFLLIAVSVSARELAGAN-VVTRTAREMATMPNGVIVGSRLIAR 60

Query: 61 VLDNAWKGHYHPPP 71
           LD AW+GHY PPP
Sbjct: 61 QLDTAWRGHYSPPP 73

The following BLAST results are available for this feature:
BLAST of Spg002507 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6600178.11.7e-0450.00hypothetical protein SDJN03_05411, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7030841.11.7e-0450.00hypothetical protein SDJN02_04878 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6576804.16.4e-0450.00hypothetical protein SDJN03_24378, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7014831.18.4e-0450.00hypothetical protein SDJN02_22460, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Spg002507 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg002507 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg002507 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg002507.1Spg002507.1mRNA