Spg002506 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg002506
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Polyadenylate-binding protein 1-like
Location	scaffold6: 3053327 .. 3062734 (-)
RNA-Seq Expression	Spg002506
Synteny	Spg002506

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCACAATTTCAACTACGACGAGCACGAACACGAAGTCTATGGAGGCGATATTCCCGACGACGCTGAGATGGATGCCGACCTCGACATGTCCTCTGGCAGGGCCGACGAAGAAGGCTACGACGCCGAGCCCAGTAACGCCAACTCCAAGGTTGCTTCTCCACTTCCGAGCTCTTCCTTCCGAGCTCTTCCATGGAGTTTTCCTCTCTCTGATTCTCTGTGTTTTCGAATTGATCAGGACCTGGAGGACATGAAGAGGAGGCTCAAGGAGATCGAAGAGGAGGCCGGCGCCCTTCGGGAAATGCAGGCCAAGGTCGAGAAGGAGATGGGCGCCGTTCAAGGTATGGTTATCTTCTCTTTTCATCTCTGTGATTCAGTTGGCTGGTTATTGAATTCTATTGTTGATCTGGGCGTGGCCTAAGGTTTTATTTGACCGGTTCTTAGTGGTTGTGGGAGGATTTAAGTTGCCTGGATGAGCTATGTAGTTTATCCGTAGGATGGGCATTGTTTGACTCTGGCTCTGACCTCTGTTGTGGACTTCGATTTAGTGGCTTTTCTTTTCTCTATAGGAAAAGACTAAAAAACCTAGTTTTAAGATTGATCAAATGTTTGTGTATTGAAGGGATTGAATTAAGTTCTAAGAGCTGTTAGGGTTGAACCTTTATTGCCTGTCTTGTACTTGAAGGATGTAATGGGCTTTTCTGGCATTCGAGATTCAGAGAGTCTAGAAAGTGGCGTGGTCTACAATGAAGGGATTTAGGAGCTAAATAGGAGAGTCTTGTGATTAACAAGGTTGTTGGAGAGCCTATCTAACCTAAGGGTTTTATAATCATCATGTCTCTTTTTCTAAACAATTGAAGTCCTTTTTAGTTTTCAACAAACTTCCTCAAAGTTTGGTTTCTCATAAAAAGAAAACGAAGCAAAAGATTGATTTTTTTTAGTAGTCTTGAGGTTTTTCTTTCATTTTTATAAATCGACCAGAGAATTTTAAAACTTTCTATATTTGATGTCATTTGACAATCTTTCATCTTGCTGGAGTGGAAGATAAGTTCTCTTTTATTTCTTATGCATGCTATCTGAAAACTGGAAATTTTGTCATATTTGAGTAGATTACCAAAGGTGAAACAATTACGTTGCGTTAATTTTGTCTGTACAAAAAGTTATGAACTTTTAGCTTGTGAAGTATGCAATATGCATGTGTTCCTGTGTGGCATGTGCATGTTTGCTCATTAGATACTTTTTAGGATAGTTTTGTGATGAATTTACTATGCCTTTTCTTGATATCATTTTATCTGGTTTTTGGTGGTGAGAAGTATATTAATCAGTGGAAGTTTTATCTCTTACTTTGGTTAACAATCTTTTAGGATCTGTAGTTTGTTTGTAATTAACTTGTGTTCGTTTTAACATGTAAGAAGATTCATCCAGTACCTCGGCAACTCAGGCTGAAAAGGAGGAAGTAGATTCTCGATCCGTATATGTTGGTAATGTGAGATTTATCACCCCTTTTGTTCACTATGTCATTTTAATATTGAAGTTTTGCAGTACGTTTCGTCTTTAGCATTGGTCTCCTTTTTCTTTTCTCTCTTGTCATCCGACAAACATGGGTTGGTCTTTACTATTTATTTTCACATTATCTGAAGTACTGAAATAAAAATGTTGAAGAACCTGTTTTTTAGTTTTCTGTTTTGTTTTGTTTTGTTTGTTTGTTTTTTTTTTAATTCTTTAACTTTGAGCATCATTCCTTTCTAAATTAAAGACAGATTTTCTTCAAGGAGTAATATTCAGATAAGAAATATAGAAGATAAAACAATTATCATTAGGGAATACCATACCACAATTTATTATATTTACGACTTGAAAAAATTGATTTGTGTCTTTTTACAAGTTTTTTTTGTTTCCATAACATAACTAGTAAACCAGAAAGTGCACGCAAGAAAAACCTATGGAACTTAGCTAAATCAGAGACCTCTTCCCAGCCCATGCTCTTCCCATTCATAAGTGTCCTCTTTCTTTCTAGCCCTCAAACAATTGTGTTCTCTGTGTTGATTCATTAGGTTTTAGCTTTTTCTTAAAGTCTATGGCCATGCAACAACTAGTTTATATTATATTCAGGCAAGTTGAATCGGCAAGTCCTTAAGGGAGTTGAAATGAAGAAAAGTCCAAGTTCCGCATATTGTTGGTATTAGAGCAGTGTGAGAATAAATGGTCTCGATCTGCCTCTGCTTTCATACGGAGCAAACAACAGCTAGGACTTATATTCATATTACGACATCTCTTTTGTAATCCATCCACTCTGTTGACGCTTTCTTGGCAAAGGGTCCCGAGAATTGTTATTGCTCCCCTGATTGCATTGCATTTATCTAGCAAAAAAGTTCCAGAAAATTTATTCAGTTCTAACTTACCCTGGTTTCTTCTTGTTACTGCCCTCCATGAATTGGTGCTGCTATCATTCCGAGCTTCTTGCACTTGTTAATTCTTTCCCCTGTATCACATTTTATAATCTAAAAAATTTTAAACAAAAATGTCGATTTTCCACTCCTGCCAAAAGGAGCTTCTCTCACTATTTCTATTCTTCAACTTTAATTGTAGTGAAGTTATCGATGTGATCTTTTAATTTGCTAATATTCCCACCGATGGCTTCACACACTTCCAGTTCCAATCTTCCTTTCTCTCGTAAACCACCCATTCTTTCATTTTTCATATATGCTAACCACCACCATAACCATAGGGCGTTAGACTCTTTTGGAAATCTGAATAACCTCTTATCCATAATGCCTAGATGCTGATGCCTAACCCACATTTCTAATGTTGCAATTATTTACCATAAAGATATAAAAATCAATCAGTATAGGAAACAATTTTATCGGCATGATCAACCTCATGAAGTGATCAAAATCTTGGACTTTTTTGTTAGTTAATGTTTCATCATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACTTTTAAAATTTTAATTTCACCATTTTCTGGTGATGAAAGACCATTTTCAATGTTCTATTTTTGTCCAAGTATTTGCATGTTTTGGATGTGAAATATCATGTAGTAATAATGAGTTATGAGTTAATAGGATATTTATTTGAAGTTTATATTCAATATGTGCCATGCCAAGTCATGATTAGTTGCTACTAGGAATAATATTTTATCAATAGAATTCTAATTTTTGGGTCTAAAGATATTTTTCCTTTAACATGCTCCTAATCTGAACCCCTGTTAAATTGTTTCTCCTTGGGCATGTTTTTTTGCCTCACTCCTTATTTCACAAGGCTTTCCGACATCATAGTTCAATACAAAATGATTTATTATTTCTGTCGTGGGTCTTACCACAGGTTGACTATGCATGCACTCCTGAAGAGGTCCAACAGCATTTTCAATCATGTGGAACAGTGAATAGAGTGACAATTTTGACAGACAAATTCGGTCACCCCAAGGGATTTGCTTATGTTGAGTTCGTGGAGGTTGATGCTGTACAGAATGCTTTGCTGTTGAATGAATCAGAGTTGCACGGTCGCCAACTAAAGGTCTTTTGAACTTGGGCTTACATAAGAACTTTCTGTCAATCATTTATTTCATTGATCAGCCACGAATAATGAATGTCTGTTGGAGGAATACGTTGGGGGATGAGACGTCGTGAGTGAAGGGTGTAACTGTATATAGAGGGGGAAAATATCTTAGGAGGGTATGCTTTTGGTGAGTAGAGTTTGCTAGGGTTGGAGTGGATGCGCTTTCTGCACGTCCCTGAGCTTGTATTTTCATTGTGGTACATAATATTGGGTTCTATTACTGACCATGGTTGGTTTTTGGTACATTTTGCAGGTCTCTGCTAAAAGGACAAATGTGCCTGGCATGAAGCAATATCGAGGAAGGCGGCCAAACCCTTTTGGTCGAGGTCGCAGGCCTTTCATGCCTGCTGCACCTTTTTATCCTTCGTATGGTTATGGGTAAGTGCTGAACTACTATGTAGCTTTTCACTCTATGGTGTGGAGAAGACTTTGTTGTGCTCACATGCATTTTATTACTTAAAAAACTTAGTAAAAATAGGATGTACGTTTGTTATGGTTATTTTTCTATTTAGCTATCATGAGATTATATATGGCCGCTGTAGAGCTCTGGTAATATAATCTGTTACTATCAGATCCAAGGAATAAATATCAAATGCATGCACAGACGTGTCGTTTCTTGTTAAAACAAAATGCATACACAGATGTGAGGAATAAATATCTTCCAAAAAGAGGCCAAAGGAGATTGTAATAGAGCCCTCATATTAGCATTTTGCTGTCAAGTTTTCGTCCTTTCGTGTAGTGTAGGAGTAAGTCTCTCATGAGTTTTCCTGTTGGCATTATCGTATGTATGCAACTGTCTGATGAGGAATAGTTACATCGTTATAGAGACACGATATTGCCTACCTGGAAAATTTTCATCGATACGCGGAAATTTACAAAAAAAAATACCAAGGACAAGCTAAGTGGTCATAAAAATTCTATTGGGAGAAGGTAGTTTAGTTTGCATATATAATTTCCATTTCTTCTTTTTTTTGGATATTTAAATCATGACCGTGCTGTATTTTCTTTTTAAAATGAAATTTGTCCTGGCCAACTTGAACATAACTCAACTTGTTTAGGCACATATCTTTGACCAAGGAAAAATTAATGTCATTTCGGTATTCCAGACGATTGCACTATTCTAGAGTATTAACTGTCCAATTTTTTCTTCTCTCTTTGCTGATTTGAAGTGGTTTGGGAAATGATATATTCATCAAATTGAAAAGAGTCAATTCCTTTCACTTTCAGCTTTATAATGCAAGTTTCTATCTTCTTACTCTATGCAGAAGGGTCCCAAGGTTCAGGCGGCCAATGCGGTACAGACCTTACTAGGAGAAATAATGCTCATACTACTACCGCAAACTATTGTTCGGGATCTACGATTCCTTCGTAAAGGGTTCAATTACCATCTCTATAACTTGGAGGATTTGGAAAACATTGTACTCTATTCATGTTTAAAAATCCCACTTGAGTTTTTTTTTATGAACTTGGTAGCAGTTTCTAGCTTGAGGGGGTAAAGATTTGTGGTTTGCATTTAGTTGGTTGGCTCTGGAAGGGCTAAAAAACCATGTTATCAACCATTAGAGAATTTGAAAGAAAGAAAATTAAGGAAACTGAAGGACATATCCTTGTGTTATGGTGAATTGGAACTGATAATGATGTAGAATTCTTTTTTATTTTAAGAAGCAATTATAAGTTTATATGTAAACCTCCCTCTTCTTTTGCCCTCTCTCCAATTTAATTGGTTTAGCAAGTTTGGTTGATTAAATTTTAGATTTAAAAAAAGCTGGGTTTGGCATTGATTTTTAATTTTTCTTAAATTTGTAGGTTGGTTTATATCAATTTTGGTTATAAAGAATCAGGTAAGTATTGTTGTATATAACTTTTTTTAATTGAAAAGTTAGATATTGAACAAATTGATTATCACGAGACAAGAGGTATAATAAAATACAAATAAATATGGTTTAACATTTTTTTTTTTTTTTTTTTTTTTTTTGAAGAATATGGTTTAACAATTTGAGTCGAGTTTAATTGGTTAAGATATATACTTTTGACCAATAGAGTTGAAGGTAGAATTTCATATAAAGAAAAAAAGTTTCATTTTCCTGAGTAAATCGTTTAAATTGCAAAATGTTTCACTGTGATTGGTTATAATATTTAATTTTGGATGACTAAACAGTAAAACCACGATGAGATAAAATATTACTGGAAATTCTGTTTGGATATTGTTAACATAATAATGGAATAATCAAGTTCCAATCTTTTTATAAAAATATTTCATAATTATTTTGTATTTTTGAAAACATAGATAAATTATGTTAAACACACTCTAAATTATTAATTTTTTCAAAGCCAAAAAAGCCATTACTTACATATTTTGTATACAACGTAAAATAGAAAGGAAATTTTGATTTATTTTTTACTATCAACTAATCTCACTTGAATCAAATTAGGTTTAAAAATCAAATAACGATTATACAGGAATAATTAATTTATCAATGTTAACTTACGAATAATTAAATTGACATTATATCATTTAGTCGTATATAATAATTAAACTTGAATATAGCTCAATTAACATTAACGATAACATCAACTAAAATGTGGAATTGCCAAAGCGAGTATAACTAAACAGTAGTTGGTATATATGTTCGATCAAAAGGTAGATTCGAATCTCCGATCTCCAAATGTTGATGTCCTAAAAAAACTAAAATGTGAAATTTCTATAAAAAATAATAACTTTACAATTATATCCTTGTATATATATTTTTAAAAAAAAAACTTATTACTTTTTGTCGGGTTCCAAACAAAGGGCAAAATCAATTTGTTTACACAAACATCGTTAACGCGGGCATATTTCATTATTTTGCGTCAATTTCTTCCGAAGTATCGATTTCAATCGCTTGCTCTGGGTTGTGAATGTAGCCATTGTTGTGGAGAACTTTGAAGTCTGAGTGAATCAGTGCCGCTGACAATTTCATTAATTTCGTTTTTTTTCCCTCAAATTTGGACTTCGATTGAACGAGCTTTCAAGTTCGACTGGTCGGATTCAATGGCTTCTAATATTGGATTAAACGAAGAAACAGCTGATAACCCATCATCGTAAGTGTGTTCGCTGTTCATTCTCGTGTTCTATCATTTTTCCTCTTTGTTTAATTATTTGTTCGTTTTGGTTATAGACTTATAGCTTCAATTCGTCGTTTCTATTTTGGTTGCTGAGAATTGTAGACGGAAGGAAAGTTATCTGTCGGATATTCTGTCTTTTTAACCTAAATTATAGTTTATGATAATGATTTTATCATAATTATTGCCCTCCATTGATGCGAAAAGAGAGGTTGAGGGGTTGATTTATAGGTCTGCTTGTAAATTGATCAATTTTCCTTTTCTTTCATTTGATTTTCTGTTGGTGAATCATTACCAGGCCTACGAGTGTGTACAAAGATCCAGATGATGGGCGGCAGCGGTTCTTGCTCGAATTGGAATTTGTTCAATGTCTTGCCAATCCAACCTACATTCATTGTACGTTTTTGCAAAATTTAGGGTTTCTGTATAGGCAGTTTGGCTGATTTCTAATGCTTGAAATTTCATCTCGAAGTAAGTTTATGTTGTATACTAACCCCATATCTAACGTTGTGGCATAGAGGAAAAAGCTAAAAACAATGCGGGTTTTGGAAATGAAACGTTCCATTAGTTTCTTCTCAAAGATGATTTTAGTTTCAATTTGGATATCTACTGAGCTAACATACATGAAATTGTGCCTGACATGAAAAAAGAACCAATCTGAAAGAAAATTATACTTGTTTGTTTCAAATGATAAAGTAGATTCAACTGTAAGCTTGAATTTTTATAATATTACACCTAATGGGAATTGTTTGTTTGTTTAAATTCTCTCGGTTGCATTTTCCTGCAAAGCTGCAATTTTAGATTGATCTGTTTGAAGAAGAAAAATACAACAAAATCTCAGATTTTGGCATTTGGAACTGAACCAATACTCCTAAATCGTCTGCATCTTCATGAGATAGAATAGCACCTGGATGCAATTTTATCTTTTGTGCAGACTATTGGAGTTTATTTATTTTTTGCTACAAAACTACCATGGAATGTATCTTTTACTAGCCTTATCGACTCAGAGACCGGTGCTTGATTCTTTTGCCTGATCATCAAGTTTTACACAGATCTGGCTCAGAATCGTTACTTTGAGGATGAAGCTTTCATTGGTTACTTGAAGTACCTCCAGTATTGGCAACGGCCAGAGTACATTAAGTTTATAATGTGAGCAAGATCTTTCCATCTTGTGTTACATTAGCTTTTCCTTCTGTTCCTTCTTTCCACACCGACGAGCTAGAACTGATTGTGCTATTAATATTGACCGACTTCAATGGTGTGTTTACAGGTATCCTCATTGTCTTTTCTTCCTTGAACTTCTGCAAAATGCAAACTTCCGGAATGCAATGGCTCATCCTGGCAATAAGGTTAATGGAGTTTTTAACTTTTTATTTTGTTTTTCTTAGCCCAACTTCCATATAAGAGAATAATTATTTAGTTGGATCGTGAACTTTTTGGTTCCATTTATTTTGGTTTGATGTAATCAAGTAAGATGCAATCATTACAGGGCTCATGACAAAATTTTGAAATGGTTTCCATTCCTTATGTCTTAACTAACTTGTTAGTGTTTGGAATTTCTTAGGAACTAGCACACAGGCAGCAATTTTACTTCTGGAAGAACTATCGGAACAATCGTTTGAAACACATTTTACCGCGACCTCTTCCCGAACCTGCAGCTCTACCGCCGCCAGTTTCTGCTCCACCTCAGGCACCTGTGCCTACGACAGCCCCTGCTATGGCAGCTTCTCCTGCTGGTACACCTGCCCTTTCTCCAATGCAGTATGGTATTCCTCCTGGATCTGGACTTTCAAAGAACGACATGAAGAGTGCAGCAATTGATCGACGAAAGAGAAAACATGTAATTTATCACACATAACTTTTTTTTTTTTTTAAACTTCAATGTTCTCTACTAGTAGGTTAGAAAACATGCCTATTCCTTTGTCTTTTCAGATTCTCATTTACTTCTGTTGTGTTTTGACAGGAAAGAAGTATGACTTAGTTGGTTTCGTTATCCAAAACTAGAGTGGATGCTGGAGCAGCTCATAAGGTAATCTGCATTGCAGTGAAAATTTCAGTTCAAAGAGGATGCCTTTCATAAACTTTCCAACAATTTTCTATTGCCTGGGTTTGTGCGAAACGTCTACATTGCAAGCTCATAAACATGAGCGATACGAGCTCGATGTCTATGGGGTCCCACTAATATGTTCAAGGAAGAAGCTCTACATGGCATTAGTATAAAACGTTCCTAAAGAATCCTTAGAAAAGTTGCTCTTATCTGTGATTCTGTGGTAAGCAGTTCCTTCTCTAACTATCCTTTTATCTCCATCTACATATGACTCGACAAACTTCTGGAGATTATGTTATGTAGGAGTATTTATTATACTATTGCAAGAATTTTTCTCTATGGTAATTGGCATGTACCCTCGACCATGAGGTCAGAGGTTCGAATCCCCCCACCCCCGAATGTTGATGTACTAAAAAAAAAAAAAAAAAAAAGTTCTGTTTCACAGGCTTTCAATTCGTGGGTGTACAATGTATCAATCAAATGAATTTCATTAGAATGTGGCTCATTAATTTAATTAGGACCGGTATGCATTGATCTCTCTGACATAGAGGAAGAAGAAAATTTTTTATGCTTATTGTTCATATTATCTTTTATATATTCATGAATGTTCGGACAAGCTCATTATTGTTCATATTATCTTAATCAGCTCCTAATTCCGACCTCTCT

mRNA sequence

ATGGAGCACAATTTCAACTACGACGAGCACGAACACGAAGTCTATGGAGGCGATATTCCCGACGACGCTGAGATGGATGCCGACCTCGACATGTCCTCTGGCAGGGCCGACGAAGAAGGCTACGACGCCGAGCCCAGTAACGCCAACTCCAAGGTTGCTTCTCCACTTCCGAGCTCTTCCTTCCGAGCTCTTCCATGGAGTTTTCCTCTCTCTGATTCTCTGTGTTTTCGAATTGATCAGGACCTGGAGGACATGAAGAGGAGGCTCAAGGAGATCGAAGAGGAGGCCGGCGCCCTTCGGGAAATGCAGGCCAAGGTCGAGAAGGAGATGGGCGCCGTTCAAGAAGATTCATCCAGTACCTCGGCAACTCAGGCTGAAAAGGAGGAAGTAGATTCTCGATCCGTATATGTTGGTAATGTTGACTATGCATGCACTCCTGAAGAGGTCCAACAGCATTTTCAATCATGTGGAACAGTGAATAGAGTGACAATTTTGACAGACAAATTCGGTCACCCCAAGGGATTTGCTTATGTTGAGTTCGTGGAGGTTGATGCTGTACAGAATGCTTTGCTGTTGAATGAATCAGAGTTGCACGGTCGCCAACTAAAGGTCTCTGCTAAAAGGACAAATGTGCCTGGCATGAAGCAATATCGAGGAAGGCGGCCAAACCCTTTTGGTCGAGGTCGCAGGCCTTTCATGCCTGCTGCACCTTTTTATCCTTCGTATGGTTATGGGAGTAAGTCTCTCATGAGTTTTCCTGTTGGCATTATCAAGGGTCCCAAGGTTCAGGCGGCCAATGCGGTACAGACCTTACTAGGAGAAATAATGCTCATACTACTACCGCAAACTATTGTTCGGGATCTACGATTCCTTCGTAAAGGGTTCAATTACCATCTCTATAACTTGGAGGATTTGGAAAACATTGTACTCTATTCATTGCCGCTGACAATTTCATTAATTTCGTTTTTTTTCCCTCAAATTTGGACTTCGATTGAACGAGCTTTCAAGTTCGACTGGTCGGATTCAATGGCTTCTAATATTGGATTAAACGAAGAAACAGCTGATAACCCATCATCGCCTACGAGTGTGTACAAAGATCCAGATGATGGGCGGCAGCGGTTCTTGCTCGAATTGGAATTTGTTCAATGTCTTGCCAATCCAACCTACATTCATTATCTGGCTCAGAATCGTTACTTTGAGGATGAAGCTTTCATTGGTTACTTGAAGTACCTCCAGTATTGGCAACGGCCAGAGTACATTAAGTTTATAATGTATCCTCATTGTCTTTTCTTCCTTGAACTTCTGCAAAATGCAAACTTCCGGAATGCAATGGCTCATCCTGGCAATAAGGAACTAGCACACAGGCAGCAATTTTACTTCTGGAAGAACTATCGGAACAATCGTTTGAAACACATTTTACCGCGACCTCTTCCCGAACCTGCAGCTCTACCGCCGCCAGTTTCTGCTCCACCTCAGGCACCTGTGCCTACGACAGCCCCTGCTATGGCAGCTTCTCCTGCTGGTACACCTGCCCTTTCTCCAATGCAGTATGGTATTCCTCCTGGATCTGGACTTTCAAAGAACGACATGAAGAGAAAGAAGTATGACTTAGTTGGTTTCGTTATCCAAAACTAG

Coding sequence (CDS)

ATGGAGCACAATTTCAACTACGACGAGCACGAACACGAAGTCTATGGAGGCGATATTCCCGACGACGCTGAGATGGATGCCGACCTCGACATGTCCTCTGGCAGGGCCGACGAAGAAGGCTACGACGCCGAGCCCAGTAACGCCAACTCCAAGGTTGCTTCTCCACTTCCGAGCTCTTCCTTCCGAGCTCTTCCATGGAGTTTTCCTCTCTCTGATTCTCTGTGTTTTCGAATTGATCAGGACCTGGAGGACATGAAGAGGAGGCTCAAGGAGATCGAAGAGGAGGCCGGCGCCCTTCGGGAAATGCAGGCCAAGGTCGAGAAGGAGATGGGCGCCGTTCAAGAAGATTCATCCAGTACCTCGGCAACTCAGGCTGAAAAGGAGGAAGTAGATTCTCGATCCGTATATGTTGGTAATGTTGACTATGCATGCACTCCTGAAGAGGTCCAACAGCATTTTCAATCATGTGGAACAGTGAATAGAGTGACAATTTTGACAGACAAATTCGGTCACCCCAAGGGATTTGCTTATGTTGAGTTCGTGGAGGTTGATGCTGTACAGAATGCTTTGCTGTTGAATGAATCAGAGTTGCACGGTCGCCAACTAAAGGTCTCTGCTAAAAGGACAAATGTGCCTGGCATGAAGCAATATCGAGGAAGGCGGCCAAACCCTTTTGGTCGAGGTCGCAGGCCTTTCATGCCTGCTGCACCTTTTTATCCTTCGTATGGTTATGGGAGTAAGTCTCTCATGAGTTTTCCTGTTGGCATTATCAAGGGTCCCAAGGTTCAGGCGGCCAATGCGGTACAGACCTTACTAGGAGAAATAATGCTCATACTACTACCGCAAACTATTGTTCGGGATCTACGATTCCTTCGTAAAGGGTTCAATTACCATCTCTATAACTTGGAGGATTTGGAAAACATTGTACTCTATTCATTGCCGCTGACAATTTCATTAATTTCGTTTTTTTTCCCTCAAATTTGGACTTCGATTGAACGAGCTTTCAAGTTCGACTGGTCGGATTCAATGGCTTCTAATATTGGATTAAACGAAGAAACAGCTGATAACCCATCATCGCCTACGAGTGTGTACAAAGATCCAGATGATGGGCGGCAGCGGTTCTTGCTCGAATTGGAATTTGTTCAATGTCTTGCCAATCCAACCTACATTCATTATCTGGCTCAGAATCGTTACTTTGAGGATGAAGCTTTCATTGGTTACTTGAAGTACCTCCAGTATTGGCAACGGCCAGAGTACATTAAGTTTATAATGTATCCTCATTGTCTTTTCTTCCTTGAACTTCTGCAAAATGCAAACTTCCGGAATGCAATGGCTCATCCTGGCAATAAGGAACTAGCACACAGGCAGCAATTTTACTTCTGGAAGAACTATCGGAACAATCGTTTGAAACACATTTTACCGCGACCTCTTCCCGAACCTGCAGCTCTACCGCCGCCAGTTTCTGCTCCACCTCAGGCACCTGTGCCTACGACAGCCCCTGCTATGGCAGCTTCTCCTGCTGGTACACCTGCCCTTTCTCCAATGCAGTATGGTATTCCTCCTGGATCTGGACTTTCAAAGAACGACATGAAGAGAAAGAAGTATGACTTAGTTGGTTTCGTTATCCAAAACTAG

Protein sequence

MEHNFNYDEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDAEPSNANSKVASPLPSSSFRALPWSFPLSDSLCFRIDQDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPNPFGRGRRPFMPAAPFYPSYGYGSKSLMSFPVGIIKGPKVQAANAVQTLLGEIMLILLPQTIVRDLRFLRKGFNYHLYNLEDLENIVLYSLPLTISLISFFFPQIWTSIERAFKFDWSDSMASNIGLNEETADNPSSPTSVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNANFRNAMAHPGNKELAHRQQFYFWKNYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPTTAPAMAASPAGTPALSPMQYGIPPGSGLSKNDMKRKKYDLVGFVIQN

Homology

[Close]

BLAST of Spg002506 vs. NCBI nr
Match: RXH94803.1 (hypothetical protein DVH24_024487 [Malus domestica])

HSP 1 Score: 552.0 bits (1421), Expect = 5.8e-153
Identity = 326/525 (62.10%), Postives = 361/525 (68.76%), Query Frame = 0


Query: 8   DEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDAEPSNANSKVASPLPSSSFRALPWS 67
           ++HEHEVYG +IP+D   D D+   +  AD+E Y+ +P   NSK                
Sbjct: 3   EQHEHEVYGAEIPNDDGEDVDMSSRADGADDEDYNDDP---NSK---------------- 62

Query: 68  FPLSDSLCFRIDQDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEK 127
                        +LEDMK+RLKEIEEEAGALR+MQAKVEKEMGAVQ D+SS SA+QAEK
Sbjct: 63  -------------ELEDMKKRLKEIEEEAGALRDMQAKVEKEMGAVQ-DTSSGSASQAEK 122

Query: 128 EEVDSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQ 187
           EEVDSRS+YVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVEV+AVQ
Sbjct: 123 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQ 182

Query: 188 NALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPNPFGRGRRPFMPAAPFYPSYGYGSK 247
           NALLLNESELHGRQLKVSAKRTNVPG+KQYRGRRPNPF R RRPF+PAAPFYPS+GYG  
Sbjct: 183 NALLLNESELHGRQLKVSAKRTNVPGLKQYRGRRPNPFFRSRRPFIPAAPFYPSFGYG-- 242

Query: 248 SLMSFPVGIIKGPKVQAANAVQTLLGEIMLIL-LPQTIVRDLRFLRKGFNYHLYNLEDLE 307
                        +V       +L  EI L+L LP                    +ED E
Sbjct: 243 -------------RVPRFRRPMSLRSEIFLLLPLP------------------LEIEDEE 302

Query: 308 NIVLYSLPLTISLISFFFPQIWTSIERAFKFDWSDSMASNIGLNEETADNPS----SPTS 367
                     + L  + F  +  +  +      SD   +  G        P+      +S
Sbjct: 303 ---------LLGLTQWEFFDVSDADPKENHHHCSDFEQTGKGKLVVADPIPAHCHRRTSS 362

Query: 368 VYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKF 427
           +YKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEY +F
Sbjct: 363 IYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYTRF 422

Query: 428 IMYPHCLFFLELLQNANFRNAMAHPGNKELAHRQQFYFWKNYRNNRLKHILPRPLPEPA- 487
           IMYPHCLFFLE LQNANFR AMAHPGNKELAHRQQFYFWKNYRNNRLKHILPRPLPEP  
Sbjct: 423 IMYPHCLFFLEQLQNANFRAAMAHPGNKELAHRQQFYFWKNYRNNRLKHILPRPLPEPVP 450

Query: 488 ALPPPVSAPPQAPVPTTAPAMAAS---PAGTPALSPMQYGIPPGS 524
           ALPPP  APPQ  VP   P  A +    A  PA SPMQY +PPGS
Sbjct: 483 ALPPP--APPQQVVPPVPPVPATTVSVTATAPAPSPMQYSMPPGS 450

[Close]

BLAST of Spg002506 vs. NCBI nr
Match: TKR68723.1 (polyadenylate-binding protein 1-like [Populus alba])

HSP 1 Score: 546.6 bits (1407), Expect = 2.4e-151
Identity = 317/539 (58.81%), Postives = 347/539 (64.38%), Query Frame = 0


Query: 2   EHNFNYDEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDAEPSNANSKVASPLPSSSF 61
           +H  +  EHEHEVYGG+IPD+ EMDAD+DMSS RA+E+ Y     + NSK          
Sbjct: 6   DHEEDEHEHEHEVYGGEIPDEGEMDADVDMSS-RAEEDEY----QDPNSK---------- 65

Query: 62  RALPWSFPLSDSLCFRIDQDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTS 121
                              DLEDMK+RLKEIEEEAGALREMQAKVEKEMGAVQ DS   S
Sbjct: 66  -------------------DLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQ-DSPGAS 125

Query: 122 ATQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFV 181
           ATQAEKEEVDSRS+YVGNVDY+CTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFV
Sbjct: 126 ATQAEKEEVDSRSIYVGNVDYSCTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFV 185

Query: 182 EVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPNPFG-RGRRPFMPAAPFYP 241
           EVDA+QNALLLNESELHGRQLKVSAKRTNVPGMKQ+RGRRP+P+G R RRPFM AAPFYP
Sbjct: 186 EVDAIQNALLLNESELHGRQLKVSAKRTNVPGMKQFRGRRPSPYGFRSRRPFM-AAPFYP 245

Query: 242 SYGYGSKSLMSFPVGIIKGPKVQAANAVQTLLGEIMLILLPQTIVRDLRFLRKGFNYHLY 301
           +YGYG                                  +P+                  
Sbjct: 246 AYGYGR---------------------------------VPR------------------ 305

Query: 302 NLEDLENIVLYSLPLTISLISFFFPQIWTSIERAFKFDWSDSMASNIGLNEETADNPSSP 361
                                                                      P
Sbjct: 306 -----------------------------------------------------------P 365

Query: 362 TSVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYI 421
             +YKDPDDGRQRFL+ELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEY+
Sbjct: 366 KKIYKDPDDGRQRFLMELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYV 396

Query: 422 KFIMYPHCLFFLELLQNANFRNAMAHPGNKELAHRQQFYFWKNYRNNRLKHILPRPLPEP 481
           KFIMYPHCL+FLELLQNANFRNAMAHPGNKELAHRQQF+FWKNYRNNRLKHILPRPLPEP
Sbjct: 426 KFIMYPHCLYFLELLQNANFRNAMAHPGNKELAHRQQFFFWKNYRNNRLKHILPRPLPEP 396

Query: 482 AALPPPVSAPPQAPVPTTAPA---MAASPAGTPALSPMQYGIPPGSGLSKNDMKRKKYD 537
              PP  + PP  P P  + A   M+A+P   P  SPM YG+PPGS   K D++    D
Sbjct: 486 VTAPPAPAQPPVQPAPPVSAATLGMSAAPGAVP--SPMPYGMPPGSAFGKIDIRSSGSD 396

[Close]

BLAST of Spg002506 vs. NCBI nr
Match: XP_025014092.1 (polyadenylate-binding protein 2 isoform X1 [Ricinus communis])

HSP 1 Score: 545.8 bits (1405), Expect = 4.2e-151
Identity = 323/540 (59.81%), Postives = 344/540 (63.70%), Query Frame = 0


Query: 7   YDEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDAE----PSNANSKVASPLPSSSFR 66
           ++E EHEVYG +IPD+ EMDAD+DMSS R +EE  + E      N NSK           
Sbjct: 6   HEEQEHEVYGSEIPDEGEMDADIDMSS-RPEEEEEEVEEEYDEQNPNSK----------- 65

Query: 67  ALPWSFPLSDSLCFRIDQDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSA 126
                             DLEDMK+RLKEIEEEAGALREMQAKVEKEMGAVQ DSSS SA
Sbjct: 66  ------------------DLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQ-DSSSGSA 125

Query: 127 TQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVE 186
           TQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVE
Sbjct: 126 TQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVE 185

Query: 187 VDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPNPFG--RGRRPFMPAAPFYP 246
           VDAVQNALLLNESELHGRQLKVSAKRTN+PGMKQYRGRRPNP+   R RRPFMP APF P
Sbjct: 186 VDAVQNALLLNESELHGRQLKVSAKRTNIPGMKQYRGRRPNPYSGFRSRRPFMP-APFSP 245

Query: 247 SYGYGSKSLMSFPVGIIKGPKVQAANAVQTLLGEIMLILLPQTIVRDLRFLRKGFNYHLY 306
            YGYG                                                       
Sbjct: 246 PYGYG------------------------------------------------------- 305

Query: 307 NLEDLENIVLYSLPLTISLISFFFPQIWTSIERAFKFDWSDSMASNIGLNEETADNPSSP 366
                                                                      P
Sbjct: 306 -----------------------------------------------------------P 365

Query: 367 TSVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYI 426
            S+YKDPDDG+QRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQ+PEYI
Sbjct: 366 KSIYKDPDDGKQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQQPEYI 397

Query: 427 KFIMYPHCLFFLELLQNANFRNAMAHPGNKELAHRQQFYFWKNYRNNRLKHILPRPLPEP 486
           KFIMYPHCLFFLELLQNA+FRNAMAHPGNKEL HRQQF+FWKNYRNNRLKHILPRPLPEP
Sbjct: 426 KFIMYPHCLFFLELLQNASFRNAMAHPGNKELTHRQQFFFWKNYRNNRLKHILPRPLPEP 397

Query: 487 AALPPPVSAP----PQAPVPTTAPAMAASPAGTPALSPMQYGIPPGSGLSKNDMKRKKYD 537
              PP  + P      +PVP T  AM A+ A   ALSPM YG+PPGS L+KNDM+    D
Sbjct: 486 VPTPPTSALPLPPLQSSPVPPTTVAMPAASAS--ALSPMPYGMPPGSTLAKNDMRNTGID 397

[Close]

BLAST of Spg002506 vs. NCBI nr
Match: XP_025014094.1 (polyadenylate-binding protein 2 isoform X2 [Ricinus communis])

HSP 1 Score: 540.0 bits (1390), Expect = 2.3e-149
Identity = 321/540 (59.44%), Postives = 342/540 (63.33%), Query Frame = 0


Query: 7   YDEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDAE----PSNANSKVASPLPSSSFR 66
           ++E EHEVYG +IPD+ EMDAD+DMSS R +EE  + E      N NSK           
Sbjct: 6   HEEQEHEVYGSEIPDEGEMDADIDMSS-RPEEEEEEVEEEYDEQNPNSK----------- 65

Query: 67  ALPWSFPLSDSLCFRIDQDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSA 126
                             DLEDMK+RLKEIEEEAGALREMQAKVEKEMGAVQ DSSS SA
Sbjct: 66  ------------------DLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQ-DSSSGSA 125

Query: 127 TQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVE 186
           TQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVE
Sbjct: 126 TQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVE 185

Query: 187 VDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPNPFG--RGRRPFMPAAPFYP 246
           VDAVQNALLLNESELHGRQLKVSAKRTN+PGMKQYRGRRPNP+   R RRPFMP APF P
Sbjct: 186 VDAVQNALLLNESELHGRQLKVSAKRTNIPGMKQYRGRRPNPYSGFRSRRPFMP-APFSP 245

Query: 247 SYGYGSKSLMSFPVGIIKGPKVQAANAVQTLLGEIMLILLPQTIVRDLRFLRKGFNYHLY 306
            YG                                                         
Sbjct: 246 PYG--------------------------------------------------------- 305

Query: 307 NLEDLENIVLYSLPLTISLISFFFPQIWTSIERAFKFDWSDSMASNIGLNEETADNPSSP 366
                                                                      P
Sbjct: 306 -----------------------------------------------------------P 365

Query: 367 TSVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYI 426
            S+YKDPDDG+QRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQ+PEYI
Sbjct: 366 KSIYKDPDDGKQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQQPEYI 395

Query: 427 KFIMYPHCLFFLELLQNANFRNAMAHPGNKELAHRQQFYFWKNYRNNRLKHILPRPLPEP 486
           KFIMYPHCLFFLELLQNA+FRNAMAHPGNKEL HRQQF+FWKNYRNNRLKHILPRPLPEP
Sbjct: 426 KFIMYPHCLFFLELLQNASFRNAMAHPGNKELTHRQQFFFWKNYRNNRLKHILPRPLPEP 395

Query: 487 AALPPPVSAP----PQAPVPTTAPAMAASPAGTPALSPMQYGIPPGSGLSKNDMKRKKYD 537
              PP  + P      +PVP T  AM A+ A   ALSPM YG+PPGS L+KNDM+    D
Sbjct: 486 VPTPPTSALPLPPLQSSPVPPTTVAMPAASAS--ALSPMPYGMPPGSTLAKNDMRNTGID 395

[Close]

BLAST of Spg002506 vs. NCBI nr
Match: KAF9668146.1 (hypothetical protein SADUNF_Sadunf15G0098100 [Salix dunnii])

HSP 1 Score: 472.2 bits (1214), Expect = 5.9e-129
Identity = 290/508 (57.09%), Postives = 320/508 (62.99%), Query Frame = 0


Query: 25  MDADLDMSSGRADEEGYDAEPSNANSKVASPLPSSSFRALPWSFPLSDSLCFRIDQDLED 84
           MDAD+DMSS RA+E+ Y  EP++                                     
Sbjct: 1   MDADVDMSS-RAEEDEYQ-EPNS------------------------------------- 60

Query: 85  MKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYAC 144
            KRRLKEIEEEAGALREMQAKVEKEMGA+ +           K        ++  VDY+C
Sbjct: 61  -KRRLKEIEEEAGALREMQAKVEKEMGAILQVLQRLKL----KRRRWMHDPFM-LVDYSC 120

Query: 145 TPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKV 204
           TPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEF+EVDAVQNAL+LNESELHGRQLKV
Sbjct: 121 TPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFIEVDAVQNALILNESELHGRQLKV 180

Query: 205 SAKRTNVPGMKQYRGRRPNPFG-RGRRPFMPAAPFYPSYGYGSKSLMSFPVGIIKGPKVQ 264
           SAKRTNVPGMKQ+RGRR +P+G R +R FMP APFY  YGYGS              KVQ
Sbjct: 181 SAKRTNVPGMKQFRGRRASPYGFRSQRAFMP-APFYSPYGYGS--------------KVQ 240

Query: 265 AANAVQTLLGEIMLILLPQTIVRDLRFLRKGFNYHLYNLEDLENIVLYSLPLTISLISFF 324
              AVQ +LG                                     YS+  T S+ SF 
Sbjct: 241 ETYAVQAILGN-----------------------------------TYSVAKT-SMASF- 300

Query: 325 FPQIWTSIERAFKFDWSDSMASNIGLNEETADNPSSPTSVYKDPDDGRQRFLLELEFVQC 384
                   E A                E   + PSSP  +YKDPDDGRQRFLLELEFVQC
Sbjct: 301 --------EEA----------------ENNPETPSSPKKIYKDPDDGRQRFLLELEFVQC 360

Query: 385 LANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNANFRNA 444
           LANPTYIHYLAQNRYFEDEAFIGYLKYL YWQRPEY+KFIMYPHCL+FLELLQNANFRNA
Sbjct: 361 LANPTYIHYLAQNRYFEDEAFIGYLKYLLYWQRPEYMKFIMYPHCLYFLELLQNANFRNA 383

Query: 445 MAHPGNKELAHRQQFYFWKNYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPTTAPAMA 504
           MAHP NKELAHRQQF+FWKNYRNNRLKHILPRPLPEPAA PP  +  P  PVP     M 
Sbjct: 421 MAHPANKELAHRQQFFFWKNYRNNRLKHILPRPLPEPAAAPP--APAPVPPVPAATLGML 383

Query: 505 ASPAGTPALSPMQYGIPPGSGLSKNDMK 532
           A+    P  SPM YG+PPGS   K+D++
Sbjct: 481 ATSGAVP--SPMPYGMPPGSAFGKSDIR 383

[Close]

BLAST of Spg002506 vs. ExPASy Swiss-Prot
Match: Q93VI4 (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 5.8e-71
Identity = 155/239 (64.85%), Postives = 172/239 (71.97%), Query Frame = 0


Query: 7   YDEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDAEPSNANSKVASPLPSSSFRALPW 66
           +DE EHEVYGG+IP++ E + D +       EEG  A             P SS R    
Sbjct: 4   HDEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELE-------PGSSSR---- 63

Query: 67  SFPLSDSLCFRIDQDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAE 126
                         DLEDMK+R+KEIEEEAGALREMQAK EK+MGA Q+ S   SA  AE
Sbjct: 64  --------------DLEDMKKRIKEIEEEAGALREMQAKAEKDMGASQDPSGGVSA--AE 123

Query: 127 KEEVDSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAV 186
           KEEVDSRS+YVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVEV+AV
Sbjct: 124 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAV 183

Query: 187 QNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPNPFGRGRRPFMPAAPFYPSYGYG 246
           QN+L+LNESELHGRQ+KVSAKRTNVPGM+Q+RG R  PF R  R FMP  PFYP Y YG
Sbjct: 184 QNSLILNESELHGRQIKVSAKRTNVPGMRQFRG-RGRPF-RPMRGFMPGVPFYPPYAYG 213

[Close]

BLAST of Spg002506 vs. ExPASy Swiss-Prot
Match: Q8VYB1 (Mediator of RNA polymerase II transcription subunit 31 OS=Arabidopsis thaliana OX=3702 GN=MED31 PE=1 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 7.6e-71
Identity = 139/189 (73.54%), Postives = 155/189 (82.01%), Query Frame = 0


Query: 343 MASNIGLNEETADNPSSPTSVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDE 402
           MAS   + ++ ++ PS P + YKDPD GRQRFLLELEF+QCLANPTYIHYLAQNRYFEDE
Sbjct: 1   MASPEEMGDDASEIPSPPKNTYKDPDGGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDE 60

Query: 403 AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNANFRNAMAHPGNKELAHRQQFYFWK 462
           AFIGYLKYLQYWQRPEYIKFIMYPHCL+FLELLQN NFR AMAHP NKELAHRQQFY+WK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNPNFRTAMAHPANKELAHRQQFYYWK 120

Query: 463 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPTTAPAMAASPAGTPALSPMQYGIPPG 522
           NYRNNRLKHILPRPLPEP  +PP    PP AP  +  PA +A+ A +PALSPMQY     
Sbjct: 121 NYRNNRLKHILPRPLPEP--VPP---QPPVAPSTSLPPAPSATAALSPALSPMQY----N 180

Query: 523 SGLSKNDMK 532
           + LSKND +
Sbjct: 181 NMLSKNDTR 180

[Close]

BLAST of Spg002506 vs. ExPASy Swiss-Prot
Match: Q9FJN9 (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.2e-63
Identity = 145/241 (60.17%), Postives = 172/241 (71.37%), Query Frame = 0


Query: 8   DEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDAEPSNANSKVASPLPSSSFRALPWS 67
           +E EHEVYGG+IPD  EMD D++  +   D    D                         
Sbjct: 2   EEEEHEVYGGEIPDVGEMDGDMEALNPDLDMAAAD------------------------- 61

Query: 68  FPLSDSLCFRIDQDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEK 127
               D++     ++L++MK+RLKE+E+EA ALREMQAKVEKEMGA  +D +S +A QA K
Sbjct: 62  ---DDAV-----KELDEMKKRLKEMEDEAAALREMQAKVEKEMGA--QDPASIAANQAGK 121

Query: 128 EEVDSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQ 187
           EEVD+RSV+VGNVDYACTPEEVQQHFQ+CGTV+RVTILTDKFG PKGFAYVEFVEV+AVQ
Sbjct: 122 EEVDARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQ 181

Query: 188 NALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPNPF--GRGRRPFMPAAPF-YPSYGY 246
            AL LNESELHGRQLKV  KRTNVPG+KQ+RGRR NP+   R RRPFM  +P+ Y  YGY
Sbjct: 182 EALQLNESELHGRQLKVLQKRTNVPGLKQFRGRRFNPYMGYRFRRPFM--SPYMYSPYGY 205

[Close]

BLAST of Spg002506 vs. ExPASy Swiss-Prot
Match: Q9LX90 (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.4e-61
Identity = 147/243 (60.49%), Postives = 163/243 (67.08%), Query Frame = 0


Query: 8   DEHEHEVYGGDIPDDAEMDA---DLDMSSGRADEEGYDAEPSNANSKVASPLPSSSFRAL 67
           +E EHEVYGG+IP+  + D    D+DMS+  ADE+                         
Sbjct: 2   EEEEHEVYGGEIPEVGDTDVPDPDIDMSA--ADEDAV----------------------- 61

Query: 68  PWSFPLSDSLCFRIDQDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQ 127
                           +L +MKRRLKE+EEEA ALREMQAKVEKEMGA Q D +S +A Q
Sbjct: 62  ---------------TELAEMKRRLKEMEEEAAALREMQAKVEKEMGATQ-DPASMAANQ 121

Query: 128 AEKEEVDSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVD 187
             KEEVD+RSVYVGNVDYACTPEEVQ HFQ+CGTVNRVTIL DKFG PKGFAYVEFVEV+
Sbjct: 122 EGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVE 181

Query: 188 AVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPNPF--GRGRRPFMPAAPFYPSY 246
           AVQ AL LNESELHGRQLKVS KRTNVPGMKQY   R NP    R RRPF+P   FY  Y
Sbjct: 182 AVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPY-FYSPY 202

[Close]

BLAST of Spg002506 vs. ExPASy Swiss-Prot
Match: O14327 (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pab2 PE=1 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 3.6e-36
Identity = 90/166 (54.22%), Postives = 112/166 (67.47%), Query Frame = 0


Query: 79  DQDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVG 138
           +++L +MK R+ E+E EA  LR MQ +++ E          T A + +KE +D++SVYVG
Sbjct: 11  EKELLEMKERVAEMEAEAAKLRAMQEQLDNE----------TEALRNDKESIDAQSVYVG 70

Query: 139 NVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GHPKGFAYVEFVEVDAVQNALLLNESEL 198
           NVDY+ TPEE+Q HF SCG+VNRVTIL DKF GHPKGFAY+EF E   V NALLLN S L
Sbjct: 71  NVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSML 130

Query: 199 HGRQLKVSAKRTNVPGMKQYRGR-RPNPFGRGRRPFMPAAPFYPSY 243
           H R LKV+ KRTNVPGM + RGR R    GRGR  +   A  +  Y
Sbjct: 131 HERPLKVTPKRTNVPGMSRGRGRGRGRGRGRGRGGYRGRARGFAPY 166

[Close]

BLAST of Spg002506 vs. ExPASy TrEMBL
Match: A0A498JLW5 (RRM domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_024487 PE=3 SV=1)

HSP 1 Score: 552.0 bits (1421), Expect = 2.8e-153
Identity = 326/525 (62.10%), Postives = 361/525 (68.76%), Query Frame = 0


Query: 8   DEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDAEPSNANSKVASPLPSSSFRALPWS 67
           ++HEHEVYG +IP+D   D D+   +  AD+E Y+ +P   NSK                
Sbjct: 3   EQHEHEVYGAEIPNDDGEDVDMSSRADGADDEDYNDDP---NSK---------------- 62

Query: 68  FPLSDSLCFRIDQDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEK 127
                        +LEDMK+RLKEIEEEAGALR+MQAKVEKEMGAVQ D+SS SA+QAEK
Sbjct: 63  -------------ELEDMKKRLKEIEEEAGALRDMQAKVEKEMGAVQ-DTSSGSASQAEK 122

Query: 128 EEVDSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQ 187
           EEVDSRS+YVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVEV+AVQ
Sbjct: 123 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQ 182

Query: 188 NALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPNPFGRGRRPFMPAAPFYPSYGYGSK 247
           NALLLNESELHGRQLKVSAKRTNVPG+KQYRGRRPNPF R RRPF+PAAPFYPS+GYG  
Sbjct: 183 NALLLNESELHGRQLKVSAKRTNVPGLKQYRGRRPNPFFRSRRPFIPAAPFYPSFGYG-- 242

Query: 248 SLMSFPVGIIKGPKVQAANAVQTLLGEIMLIL-LPQTIVRDLRFLRKGFNYHLYNLEDLE 307
                        +V       +L  EI L+L LP                    +ED E
Sbjct: 243 -------------RVPRFRRPMSLRSEIFLLLPLP------------------LEIEDEE 302

Query: 308 NIVLYSLPLTISLISFFFPQIWTSIERAFKFDWSDSMASNIGLNEETADNPS----SPTS 367
                     + L  + F  +  +  +      SD   +  G        P+      +S
Sbjct: 303 ---------LLGLTQWEFFDVSDADPKENHHHCSDFEQTGKGKLVVADPIPAHCHRRTSS 362

Query: 368 VYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKF 427
           +YKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEY +F
Sbjct: 363 IYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYTRF 422

Query: 428 IMYPHCLFFLELLQNANFRNAMAHPGNKELAHRQQFYFWKNYRNNRLKHILPRPLPEPA- 487
           IMYPHCLFFLE LQNANFR AMAHPGNKELAHRQQFYFWKNYRNNRLKHILPRPLPEP  
Sbjct: 423 IMYPHCLFFLEQLQNANFRAAMAHPGNKELAHRQQFYFWKNYRNNRLKHILPRPLPEPVP 450

Query: 488 ALPPPVSAPPQAPVPTTAPAMAAS---PAGTPALSPMQYGIPPGS 524
           ALPPP  APPQ  VP   P  A +    A  PA SPMQY +PPGS
Sbjct: 483 ALPPP--APPQQVVPPVPPVPATTVSVTATAPAPSPMQYSMPPGS 450

[Close]

BLAST of Spg002506 vs. ExPASy TrEMBL
Match: A0A4U5MIM5 (Polyadenylate-binding protein 1-like OS=Populus alba OX=43335 GN=D5086_0000306630 PE=3 SV=1)

HSP 1 Score: 546.6 bits (1407), Expect = 1.2e-151
Identity = 317/539 (58.81%), Postives = 347/539 (64.38%), Query Frame = 0


Query: 2   EHNFNYDEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDAEPSNANSKVASPLPSSSF 61
           +H  +  EHEHEVYGG+IPD+ EMDAD+DMSS RA+E+ Y     + NSK          
Sbjct: 6   DHEEDEHEHEHEVYGGEIPDEGEMDADVDMSS-RAEEDEY----QDPNSK---------- 65

Query: 62  RALPWSFPLSDSLCFRIDQDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTS 121
                              DLEDMK+RLKEIEEEAGALREMQAKVEKEMGAVQ DS   S
Sbjct: 66  -------------------DLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQ-DSPGAS 125

Query: 122 ATQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFV 181
           ATQAEKEEVDSRS+YVGNVDY+CTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFV
Sbjct: 126 ATQAEKEEVDSRSIYVGNVDYSCTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFV 185

Query: 182 EVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPNPFG-RGRRPFMPAAPFYP 241
           EVDA+QNALLLNESELHGRQLKVSAKRTNVPGMKQ+RGRRP+P+G R RRPFM AAPFYP
Sbjct: 186 EVDAIQNALLLNESELHGRQLKVSAKRTNVPGMKQFRGRRPSPYGFRSRRPFM-AAPFYP 245

Query: 242 SYGYGSKSLMSFPVGIIKGPKVQAANAVQTLLGEIMLILLPQTIVRDLRFLRKGFNYHLY 301
           +YGYG                                  +P+                  
Sbjct: 246 AYGYGR---------------------------------VPR------------------ 305

Query: 302 NLEDLENIVLYSLPLTISLISFFFPQIWTSIERAFKFDWSDSMASNIGLNEETADNPSSP 361
                                                                      P
Sbjct: 306 -----------------------------------------------------------P 365

Query: 362 TSVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYI 421
             +YKDPDDGRQRFL+ELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEY+
Sbjct: 366 KKIYKDPDDGRQRFLMELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYV 396

Query: 422 KFIMYPHCLFFLELLQNANFRNAMAHPGNKELAHRQQFYFWKNYRNNRLKHILPRPLPEP 481
           KFIMYPHCL+FLELLQNANFRNAMAHPGNKELAHRQQF+FWKNYRNNRLKHILPRPLPEP
Sbjct: 426 KFIMYPHCLYFLELLQNANFRNAMAHPGNKELAHRQQFFFWKNYRNNRLKHILPRPLPEP 396

Query: 482 AALPPPVSAPPQAPVPTTAPA---MAASPAGTPALSPMQYGIPPGSGLSKNDMKRKKYD 537
              PP  + PP  P P  + A   M+A+P   P  SPM YG+PPGS   K D++    D
Sbjct: 486 VTAPPAPAQPPVQPAPPVSAATLGMSAAPGAVP--SPMPYGMPPGSAFGKIDIRSSGSD 396

[Close]

BLAST of Spg002506 vs. ExPASy TrEMBL
Match: A0A803P1V0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 516.2 bits (1328), Expect = 1.7e-142
Identity = 295/460 (64.13%), Postives = 312/460 (67.83%), Query Frame = 0


Query: 80  QDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGN 139
           ++LEDMK+RLKE+EEEAGALREMQAKVEKEMGAVQ DSSSTSATQAEKEEVDSRS+YVGN
Sbjct: 10  EELEDMKKRLKEMEEEAGALREMQAKVEKEMGAVQ-DSSSTSATQAEKEEVDSRSIYVGN 69

Query: 140 VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHG 199
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVEV+AVQNALLLNESELHG
Sbjct: 70  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNALLLNESELHG 129

Query: 200 RQLKVSAKRTNVPGMKQYRGRRPNPFGRGRRPFMPAAPFYPSYGYGSKSLMSFPVGIIKG 259
           RQLKVSAKRTNVPGMKQ+RGRR  PF R RRPF PA+PFYPSYGYG              
Sbjct: 130 RQLKVSAKRTNVPGMKQFRGRRAGPF-RSRRPFAPASPFYPSYGYG-------------- 189

Query: 260 PKVQAANAVQTLLGEIMLILLPQTIVRDLRFLRKGFNYHLYNLEDLENIVLYSLPLTISL 319
                                     R  RF R                           
Sbjct: 190 --------------------------RVPRFRR--------------------------- 249

Query: 320 ISFFFPQIWTSIERAFKFDWSDSMASNIGLNEETADNPSSPTSVYKDPDDGRQRFLLELE 379
                                                P    S+YKDPDDGRQRFLLELE
Sbjct: 250 -------------------------------------PMRQKSIYKDPDDGRQRFLLELE 309

Query: 380 FVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNAN 439
           FVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQ+PEY+KFIMYPHCL+FLELLQNAN
Sbjct: 310 FVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQQPEYMKFIMYPHCLYFLELLQNAN 358

Query: 440 FRNAMAHPGNKELAHRQQFYFWKNYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPTTA 499
           FRNAMAHPG+KELAHRQQFYFWKNYRNNRLKHILPR LPEP   P P   PPQ  +P  A
Sbjct: 370 FRNAMAHPGSKELAHRQQFYFWKNYRNNRLKHILPRSLPEP---PAPTPVPPQQSMPPVA 358

Query: 500 PA---MAASPAGTPALSPMQYGIPPGSGLSKNDMKRKKYD 537
            +   MAA+P   P LSPMQY  P GS L K DM+    D
Sbjct: 430 ASTIGMAAAPG--PVLSPMQYANPQGSSLPKTDMRNTGAD 358

[Close]

BLAST of Spg002506 vs. ExPASy TrEMBL
Match: A0A6N2MJL7 (RRM domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS379645 PE=3 SV=1)

HSP 1 Score: 469.9 bits (1208), Expect = 1.4e-128
Identity = 290/539 (53.80%), Postives = 327/539 (60.67%), Query Frame = 0


Query: 2   EHNFNYDEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDAEPSNANSKVASPLPSSSF 61
           +H  +  EHEHEVYGG+IPD+ EMDAD+DMSS RA+E+ Y     + NSK          
Sbjct: 6   DHEEDEHEHEHEVYGGEIPDEGEMDADIDMSS-RAEEDEY----QDPNSK---------- 65

Query: 62  RALPWSFPLSDSLCFRIDQDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTS 121
                              DLEDMK+RLKEIEEEA ALREMQAKVEKEMGAVQ DS   S
Sbjct: 66  -------------------DLEDMKKRLKEIEEEASALREMQAKVEKEMGAVQ-DSPGAS 125

Query: 122 ATQAEKEEVDSRSVYVGN--VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVE 181
           ATQAEKEEVDSRS+YVGN  VDY+CTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVE
Sbjct: 126 ATQAEKEEVDSRSIYVGNVRVDYSCTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVE 185

Query: 182 FVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPNPFG-RGRRPFMPAAPF 241
           FVE DA+QNALLLNESELHGRQLKVSAKRTNVPGMK +RGRRP+ +G R RRPFMP    
Sbjct: 186 FVEADAIQNALLLNESELHGRQLKVSAKRTNVPGMKLFRGRRPSAYGFRSRRPFMP---- 245

Query: 242 YPSYGYGSKSLMSFPVGIIKGPKVQAANAVQTLLGEIMLILLPQTIVRDLRFLRKGFNYH 301
           YP+YGY                                                 GFN +
Sbjct: 246 YPAYGY-------------------------------------------------GFNLN 305

Query: 302 LYNLEDLENIVLYSLPLTISLISFFFPQIWTSIERAFKFDWSDSMASNIGLNEETADNPS 361
           +                               I  A  F  S  +      +E+  +  +
Sbjct: 306 I-------------------------------ISCAEGFQGSGDLCDTGHTSEQKRNTRN 365

Query: 362 SPTSVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPE 421
             TS       G+    L+L             YLAQNRYF+DEAFIGYLKYLQYWQRPE
Sbjct: 366 CSTS-------GKLELSLQLR-----------KYLAQNRYFDDEAFIGYLKYLQYWQRPE 407

Query: 422 YIKFIMYPHCLFFLELLQNANFRNAMAHPGNKELAHRQQFYFWKNYRNNRLKHILPRPLP 481
           Y+KFIMYPHCL+FLELLQN NFRNAMAHPGNKELAHRQQF+FWKNYRNNRLKHILPRPLP
Sbjct: 426 YVKFIMYPHCLYFLELLQNVNFRNAMAHPGNKELAHRQQFFFWKNYRNNRLKHILPRPLP 407

Query: 482 EPAALPPPVSAPPQAPVPTTAPAMAASPAGTPAL-SPMQYGIPPGSGLSKNDMKRKKYD 537
           EP   PP  + PPQ P    + A    PA + A+ SPM YG+PPGS   K+D++    D
Sbjct: 486 EPVTAPPAPAPPPQPPAQPVSAATLGMPAASGAVPSPMPYGMPPGSAFGKSDIRSSGSD 407

[Close]

BLAST of Spg002506 vs. ExPASy TrEMBL
Match: A0A6A6MFI3 (Mediator of RNA polymerase II transcription subunit 31 OS=Hevea brasiliensis OX=3981 GN=GH714_025717 PE=3 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 2.1e-108
Identity = 239/419 (57.04%), Postives = 253/419 (60.38%), Query Frame = 0


Query: 7   YDEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDAEPSNANSKVASPLPSSSFRALPW 66
           ++E EH+VYG +IPD+ E+DAD+DMSS R +E+    E    NSK               
Sbjct: 4   HEEQEHDVYGSEIPDEGEIDADIDMSS-RPEED----EDHGPNSK--------------- 63

Query: 67  SFPLSDSLCFRIDQDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAE 126
                         DLEDMK+RLKEIEEEAGALREMQAKVEKEMGAVQ DSSS SATQAE
Sbjct: 64  --------------DLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQ-DSSSASATQAE 123

Query: 127 KEEVDSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAV 186
           KEEVDSRS+YVGNVDY CTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVE DAV
Sbjct: 124 KEEVDSRSIYVGNVDYTCTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVETDAV 183

Query: 187 QNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPNPFG-RGRRPFMPAAPFYPSYGYG 246
           QNALLLNESELHGRQLKVSAKRTN+PGMKQYRGRRPNP+G R RRPFMPA PFYP YGYG
Sbjct: 184 QNALLLNESELHGRQLKVSAKRTNIPGMKQYRGRRPNPYGFRSRRPFMPAPPFYPPYGYG 243

Query: 247 SKSLMSFPVGIIKGPKVQAANAVQTLLGEIMLILLPQTIVRDLRFLRKGFNYHLYNLEDL 306
                                                                       
Sbjct: 244 ------------------------------------------------------------ 273

Query: 307 ENIVLYSLPLTISLISFFFPQIWTSIERAFKFDWSDSMASNIGLNEETADNPSSPTSVYK 366
                                                                 P S+YK
Sbjct: 304 ------------------------------------------------------PKSIYK 273

Query: 367 DPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIM 425
           DPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIM
Sbjct: 364 DPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIM 273

[Close]

BLAST of Spg002506 vs. TAIR 10
Match: AT5G51120.1 (polyadenylate-binding protein 1 )

HSP 1 Score: 270.0 bits (689), Expect = 4.1e-72
Identity = 155/239 (64.85%), Postives = 172/239 (71.97%), Query Frame = 0


Query: 7   YDEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDAEPSNANSKVASPLPSSSFRALPW 66
           +DE EHEVYGG+IP++ E + D +       EEG  A             P SS R    
Sbjct: 4   HDEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELE-------PGSSSR---- 63

Query: 67  SFPLSDSLCFRIDQDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAE 126
                         DLEDMK+R+KEIEEEAGALREMQAK EK+MGA Q+ S   SA  AE
Sbjct: 64  --------------DLEDMKKRIKEIEEEAGALREMQAKAEKDMGASQDPSGGVSA--AE 123

Query: 127 KEEVDSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAV 186
           KEEVDSRS+YVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVEV+AV
Sbjct: 124 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAV 183

Query: 187 QNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPNPFGRGRRPFMPAAPFYPSYGYG 246
           QN+L+LNESELHGRQ+KVSAKRTNVPGM+Q+RG R  PF R  R FMP  PFYP Y YG
Sbjct: 184 QNSLILNESELHGRQIKVSAKRTNVPGMRQFRG-RGRPF-RPMRGFMPGVPFYPPYAYG 213

[Close]

BLAST of Spg002506 vs. TAIR 10
Match: AT5G19910.1 (SOH1 family protein )

HSP 1 Score: 269.6 bits (688), Expect = 5.4e-72
Identity = 139/189 (73.54%), Postives = 155/189 (82.01%), Query Frame = 0


Query: 343 MASNIGLNEETADNPSSPTSVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDE 402
           MAS   + ++ ++ PS P + YKDPD GRQRFLLELEF+QCLANPTYIHYLAQNRYFEDE
Sbjct: 1   MASPEEMGDDASEIPSPPKNTYKDPDGGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDE 60

Query: 403 AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNANFRNAMAHPGNKELAHRQQFYFWK 462
           AFIGYLKYLQYWQRPEYIKFIMYPHCL+FLELLQN NFR AMAHP NKELAHRQQFY+WK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNPNFRTAMAHPANKELAHRQQFYYWK 120

Query: 463 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPTTAPAMAASPAGTPALSPMQYGIPPG 522
           NYRNNRLKHILPRPLPEP  +PP    PP AP  +  PA +A+ A +PALSPMQY     
Sbjct: 121 NYRNNRLKHILPRPLPEP--VPP---QPPVAPSTSLPPAPSATAALSPALSPMQY----N 180

Query: 523 SGLSKNDMK 532
           + LSKND +
Sbjct: 181 NMLSKNDTR 180

[Close]

BLAST of Spg002506 vs. TAIR 10
Match: AT5G19910.2 (SOH1 family protein )

HSP 1 Score: 253.8 bits (647), Expect = 3.1e-67
Identity = 139/219 (63.47%), Postives = 155/219 (70.78%), Query Frame = 0


Query: 343 MASNIGLNEETADNPSSPTSVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDE 402
           MAS   + ++ ++ PS P + YKDPD GRQRFLLELEF+QCLANPTYIHYLAQNRYFEDE
Sbjct: 1   MASPEEMGDDASEIPSPPKNTYKDPDGGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDE 60

Query: 403 AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNANFRNAMAHPGNK------------ 462
           AFIGYLKYLQYWQRPEYIKFIMYPHCL+FLELLQN NFR AMAHP NK            
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNPNFRTAMAHPANKWFKMLGYWCFWN 120

Query: 463 ------------------ELAHRQQFYFWKNYRNNRLKHILPRPLPEPAALPPPVSAPPQ 522
                             ELAHRQQFY+WKNYRNNRLKHILPRPLPEP  +PP    PP 
Sbjct: 121 VFWGLVEFRVSLVQNLAYELAHRQQFYYWKNYRNNRLKHILPRPLPEP--VPP---QPPV 180

Query: 523 APVPTTAPAMAASPAGTPALSPMQYGIPPGSGLSKNDMK 532
           AP  +  PA +A+ A +PALSPMQY     + LSKND +
Sbjct: 181 APSTSLPPAPSATAALSPALSPMQY----NNMLSKNDTR 210

[Close]

BLAST of Spg002506 vs. TAIR 10
Match: AT5G51120.2 (polyadenylate-binding protein 1 )

HSP 1 Score: 252.3 bits (643), Expect = 8.9e-67
Identity = 152/275 (55.27%), Postives = 173/275 (62.91%), Query Frame = 0


Query: 7   YDEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDAEPSNANSKVASPLPSSSFRALPW 66
           +DE EHEVYGG+IP++ E + D +       EEG  A             P SS R    
Sbjct: 4   HDEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELE-------PGSSSR---- 63

Query: 67  SFPLSDSLCFRIDQDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQ------------ 126
                         DLEDMK+R+KEIEEEAGALREMQAK EK+MGA Q            
Sbjct: 64  --------------DLEDMKKRIKEIEEEAGALREMQAKAEKDMGASQGLKLVLLIMILL 123

Query: 127 ------------------------EDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQ 186
                                   ++  ++  + AEKEEVDSRS+YVGNVDYACTPEEVQ
Sbjct: 124 WVYILESFSESMNLSRNLLEFEYEKEIINSGVSAAEKEEVDSRSIYVGNVDYACTPEEVQ 183

Query: 187 QHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTN 246
           QHFQSCGTVNRVTILTDKFG PKGFAYVEFVEV+AVQN+L+LNESELHGRQ+KVSAKRTN
Sbjct: 184 QHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTN 243

[Close]

BLAST of Spg002506 vs. TAIR 10
Match: AT5G65260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 245.7 bits (626), Expect = 8.3e-65
Identity = 145/241 (60.17%), Postives = 172/241 (71.37%), Query Frame = 0


Query: 8   DEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDAEPSNANSKVASPLPSSSFRALPWS 67
           +E EHEVYGG+IPD  EMD D++  +   D    D                         
Sbjct: 2   EEEEHEVYGGEIPDVGEMDGDMEALNPDLDMAAAD------------------------- 61

Query: 68  FPLSDSLCFRIDQDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEK 127
               D++     ++L++MK+RLKE+E+EA ALREMQAKVEKEMGA  +D +S +A QA K
Sbjct: 62  ---DDAV-----KELDEMKKRLKEMEDEAAALREMQAKVEKEMGA--QDPASIAANQAGK 121

Query: 128 EEVDSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQ 187
           EEVD+RSV+VGNVDYACTPEEVQQHFQ+CGTV+RVTILTDKFG PKGFAYVEFVEV+AVQ
Sbjct: 122 EEVDARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQ 181

Query: 188 NALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPNPF--GRGRRPFMPAAPF-YPSYGY 246
            AL LNESELHGRQLKV  KRTNVPG+KQ+RGRR NP+   R RRPFM  +P+ Y  YGY
Sbjct: 182 EALQLNESELHGRQLKVLQKRTNVPGLKQFRGRRFNPYMGYRFRRPFM--SPYMYSPYGY 205

The following BLAST results are available for this feature:

BLAST of Spg002506 vs. NCBI nr


Match Name	E-value	Identity	Description
RXH94803.1	5.8e-153	62.10	hypothetical protein DVH24_024487 [Malus domestica]	[more]
TKR68723.1	2.4e-151	58.81	polyadenylate-binding protein 1-like [Populus alba]	[more]
XP_025014092.1	4.2e-151	59.81	polyadenylate-binding protein 2 isoform X1 [Ricinus communis]	[more]
XP_025014094.1	2.3e-149	59.44	polyadenylate-binding protein 2 isoform X2 [Ricinus communis]	[more]
KAF9668146.1	5.9e-129	57.09	hypothetical protein SADUNF_Sadunf15G0098100 [Salix dunnii]	[more]

BLAST of Spg002506 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93VI4	5.8e-71	64.85	Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV...	[more]
Q8VYB1	7.6e-71	73.54	Mediator of RNA polymerase II transcription subunit 31 OS=Arabidopsis thaliana O...	[more]
Q9FJN9	1.2e-63	60.17	Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV...	[more]
Q9LX90	1.4e-61	60.49	Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV...	[more]
O14327	3.6e-36	54.22	Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]

BLAST of Spg002506 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A498JLW5	2.8e-153	62.10	RRM domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_024487 PE=3 SV...	[more]
A0A4U5MIM5	1.2e-151	58.81	Polyadenylate-binding protein 1-like OS=Populus alba OX=43335 GN=D5086_000030663...	[more]
A0A803P1V0	1.7e-142	64.13	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A6N2MJL7	1.4e-128	53.80	RRM domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS379645 PE...	[more]
A0A6A6MFI3	2.1e-108	57.04	Mediator of RNA polymerase II transcription subunit 31 OS=Hevea brasiliensis OX=...	[more]

BLAST of Spg002506 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51120.1	4.1e-72	64.85	polyadenylate-binding protein 1	[more]
AT5G19910.1	5.4e-72	73.54	SOH1 family protein	[more]
AT5G19910.2	3.1e-67	63.47	SOH1 family protein	[more]
AT5G51120.2	8.9e-67	55.27	polyadenylate-binding protein 1	[more]
AT5G65260.1	8.3e-65	60.17	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 75..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 483..497
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 483..505
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 8..44
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 80..247
None	No IPR available	PANTHER	PTHR23236:SF75	POLYADENYLATE-BINDING PROTEIN 1-LIKE	coord: 8..44
None	No IPR available	PANTHER	PTHR23236:SF75	POLYADENYLATE-BINDING PROTEIN 1-LIKE	coord: 80..247
None	No IPR available	CDD	cd12306	RRM_II_PABPs	coord: 134..205 e-value: 1.18669E-46 score: 155.527
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 134..205 e-value: 4.4E-22 score: 89.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 135..203 e-value: 1.4E-15 score: 56.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 133..209 score: 16.773018
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 76..206 e-value: 1.2E-27 score: 98.6
IPR038089	Mediator of RNA polymerase II, subunit Med31 superfamily	GENE3D	1.10.10.1340	Mediator of RNA polymerase II, submodule Med31 (Soh1)	coord: 359..461 e-value: 1.5E-40 score: 139.1
IPR008831	Mediator complex, subunit Med31	PFAM	PF05669	Med31	coord: 372..464 e-value: 1.8E-34 score: 117.7
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 122..232

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg002506.1	Spg002506.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003712	transcription coregulator activity
molecular_function	GO:0003676	nucleic acid binding