Spg002403 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg002403
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Caffeic acid 3-O-methyltransferase-like
Location	scaffold6: 302990 .. 303986 (+)
RNA-Seq Expression	Spg002403
Synteny	Spg002403

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAGAAAGAAGAAATAATGATAATGGGGAAACGGAAACATTTGAATTCAAAGAGGGAGAGGGAGAGCGAGAGCGAGACACAGAGCGAGGGAGAATCGAAATCGAGGTCCATTTGTTACATAGAAGGAGAAGAAGACAACGACGACAAAGACAGTAGTACGCCCCTCCGACCTATTTTCTGTCTGAAAAATATTACGGATTTGAAGCATTTCGACGAGGTGGAGGACTGCTACTTTTTGGAGTTTGACCCATTTCATTCCCTCAATCCAAGGCGGCTCTCCTTTCCTAAGAGTACCAACGATCACTCTGACTCTGAATCTGAGCTCTCTCTTGTGGCTGAAAAGGGTCAGGTAACCCCATCAAAACCCTTTCTCCTCCAGCCTTTCTGATTTATAACTCACTAACTATTGTTTTTTTGGACTTTGTGATCGTAGCTGGCTTGTAGAGACTATCCGCATCCTAGGTATTTGTGTCTCCAATTTCCCTTCCAGACAACGCCTCACGAGACTCACTGTCAGATGGTAACAAAACCCTTTCTTCATCTTATTCATTCTATTCACATGGAATTGATACTAAATAATTCTCTGCAGTGCTACTGTTACGTCTGTGATGTCATCGCTCCATGCCACCACTGGACTCCACACTGCCATGCTTCTCATACTGATCCATTGTGGAAATGGAAAAGGAAATCCAACAGGGGCACAAACACCACCACCACCACCATTCCACCTCTGCATTAGCTTTAGTCATTTCCTTCTTGTACAATCTTCTCAACACTATTTCGTCTATGCCTTAGTTACCCTCAATCTACTCAAAGACTTATCATTTTGAATCATTGTTAATGAAATCCCTTTTTTTCCTAACCACTTTTTGAGGGTTTTATCACATTGTAAGTTAGGAATGAAGATTCTGATGGGAGGACCCAACCCACCAGATGACTTCAATAAATACCAAATGTATAAATTTTTTATATTCATTCATGCTAATCTTCGTCTTT

mRNA sequence

ATGATAATGGGGAAACGGAAACATTTGAATTCAAAGAGGGAGAGGGAGAGCGAGAGCGAGACACAGAGCGAGGGAGAATCGAAATCGAGGTCCATTTGTTACATAGAAGGAGAAGAAGACAACGACGACAAAGACAGTAGTACGCCCCTCCGACCTATTTTCTGTCTGAAAAATATTACGGATTTGAAGCATTTCGACGAGGTGGAGGACTGCTACTTTTTGGAGTTTGACCCATTTCATTCCCTCAATCCAAGGCGGCTCTCCTTTCCTAAGAGTACCAACGATCACTCTGACTCTGAATCTGAGCTCTCTCTTGTGGCTGAAAAGGGTCAGCTGGCTTGTAGAGACTATCCGCATCCTAGTGCTACTGTTACGTCTGTGATGTCATCGCTCCATGCCACCACTGGACTCCACACTGCCATGCTTCTCATACTGATCCATTGTGGAAATGGAAAAGGAAATCCAACAGGGGCACAAACACCACCACCACCACCATTCCACCTCTGCATTAGCTTTAGTCATTTCCTTCTTGTACAATCTTCTCAACACTATTTCGTCTATGCCTTAGTTACCCTCAATCTACTCAAAGACTTATCATTTTGA

Coding sequence (CDS)

ATGATAATGGGGAAACGGAAACATTTGAATTCAAAGAGGGAGAGGGAGAGCGAGAGCGAGACACAGAGCGAGGGAGAATCGAAATCGAGGTCCATTTGTTACATAGAAGGAGAAGAAGACAACGACGACAAAGACAGTAGTACGCCCCTCCGACCTATTTTCTGTCTGAAAAATATTACGGATTTGAAGCATTTCGACGAGGTGGAGGACTGCTACTTTTTGGAGTTTGACCCATTTCATTCCCTCAATCCAAGGCGGCTCTCCTTTCCTAAGAGTACCAACGATCACTCTGACTCTGAATCTGAGCTCTCTCTTGTGGCTGAAAAGGGTCAGCTGGCTTGTAGAGACTATCCGCATCCTAGTGCTACTGTTACGTCTGTGATGTCATCGCTCCATGCCACCACTGGACTCCACACTGCCATGCTTCTCATACTGATCCATTGTGGAAATGGAAAAGGAAATCCAACAGGGGCACAAACACCACCACCACCACCATTCCACCTCTGCATTAGCTTTAGTCATTTCCTTCTTGTACAATCTTCTCAACACTATTTCGTCTATGCCTTAGTTACCCTCAATCTACTCAAAGACTTATCATTTTGA

Protein sequence

MIMGKRKHLNSKRERESESETQSEGESKSRSICYIEGEEDNDDKDSSTPLRPIFCLKNITDLKHFDEVEDCYFLEFDPFHSLNPRRLSFPKSTNDHSDSESELSLVAEKGQLACRDYPHPSATVTSVMSSLHATTGLHTAMLLILIHCGNGKGNPTGAQTPPPPPFHLCISFSHFLLVQSSQHYFVYALVTLNLLKDLSF

Homology

[Close]

BLAST of Spg002403 vs. NCBI nr
Match: KDO42200.1 (hypothetical protein CISIN_1g031111mg [Citrus sinensis])

HSP 1 Score: 103.2 bits (256), Expect = 2.6e-18
Identity = 45/82 (54.88%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 38  EEDNDDKDSSTPLRPIFCLKNITDLKHFDEVEDCYFLEFDPFHSLNPRRLSFPKSTNDHS 97
           EED D     TP+RP+FCLK  TDLKHF+E EDC+ L+FDPF S++  +LS  K+ +   
Sbjct: 23  EEDED----GTPVRPVFCLKRNTDLKHFEETEDCFILDFDPFDSVDISKLSMSKTLDSAD 82

Query: 98  DSESELSLVAEKGQLACRDYPH 120
           D+ +++S++AEKGQ+ACRDYPH
Sbjct: 83  DANNDISVIAEKGQVACRDYPH 100

[Close]

BLAST of Spg002403 vs. NCBI nr
Match: XP_006478089.1 (uncharacterized protein LOC102629006 [Citrus sinensis])

HSP 1 Score: 103.2 bits (256), Expect = 2.6e-18
Identity = 45/82 (54.88%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 38  EEDNDDKDSSTPLRPIFCLKNITDLKHFDEVEDCYFLEFDPFHSLNPRRLSFPKSTNDHS 97
           EED D     TP+RP+FCLK  TDLKHF+E EDC+ L+FDPF S++  +LS  K+ +   
Sbjct: 23  EEDED----GTPVRPVFCLKRNTDLKHFEETEDCFILDFDPFDSVDISKLSMSKTLDSAD 82

Query: 98  DSESELSLVAEKGQLACRDYPH 120
           D+ +++S++AEKGQ+ACRDYPH
Sbjct: 83  DANNDISVIAEKGQVACRDYPH 100

[Close]

BLAST of Spg002403 vs. NCBI nr
Match: XP_006441265.1 (uncharacterized protein LOC18049348 [Citrus clementina] >ESR54505.1 hypothetical protein CICLE_v10022593mg [Citrus clementina])

HSP 1 Score: 103.2 bits (256), Expect = 2.6e-18
Identity = 45/82 (54.88%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 38  EEDNDDKDSSTPLRPIFCLKNITDLKHFDEVEDCYFLEFDPFHSLNPRRLSFPKSTNDHS 97
           EED D     TP+RP+FCLK  TDLKHF+E EDC+ L+FDPF S++  +LS  K+ +   
Sbjct: 23  EEDED----GTPVRPVFCLKRNTDLKHFEETEDCFILDFDPFESVDISKLSVSKTLDSAD 82

Query: 98  DSESELSLVAEKGQLACRDYPH 120
           D+ +++S++AEKGQ+ACRDYPH
Sbjct: 83  DANNDISVIAEKGQVACRDYPH 100

[Close]

BLAST of Spg002403 vs. NCBI nr
Match: GAY53088.1 (hypothetical protein CUMW_146730 [Citrus unshiu])

HSP 1 Score: 103.2 bits (256), Expect = 2.6e-18
Identity = 45/82 (54.88%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 38  EEDNDDKDSSTPLRPIFCLKNITDLKHFDEVEDCYFLEFDPFHSLNPRRLSFPKSTNDHS 97
           EED D     TP+RP+FCLK  TDLKHF+E EDC+ L+FDPF S++  +LS  K+ +   
Sbjct: 23  EEDED----GTPVRPVFCLKRNTDLKHFEETEDCFILDFDPFESVDISKLSVSKTLDSAD 82

Query: 98  DSESELSLVAEKGQLACRDYPH 120
           D+ +++S++AEKGQ+ACRDYPH
Sbjct: 83  DANNDISVIAEKGQVACRDYPH 100

[Close]

BLAST of Spg002403 vs. NCBI nr
Match: XP_011075885.1 (uncharacterized protein LOC105160269 [Sesamum indicum])

HSP 1 Score: 98.6 bits (244), Expect = 6.5e-17
Identity = 56/116 (48.28%), Postives = 73/116 (62.93%), Query Frame = 0


Query: 8   HLNSKRERESESETQSEGESKSRSICYIEGEEDNDDKDSSTPLRPIFCLKNITDLKHFDE 67
           H   K+ R  +  T +E   K R +  I     + DK   TPLRPIFCLKN  D+K F+E
Sbjct: 4   HSVVKKPRVEKISTMAE---KKRQVIEIGDSCSSPDK-KGTPLRPIFCLKNRDDIKKFEE 63

Query: 68  VEDCYFLEFDPFHSLNPRRLSFPKSTNDHSDSESELSLVAEKGQLACRDYPHPSAT 124
            EDC+ LEFDP+  L   +LSFPK   D  ++E+++ +VAEKGQ+ACRDYPHP  T
Sbjct: 64  QEDCFILEFDPYDDLEVLKLSFPK---DCGNAEADVRVVAEKGQVACRDYPHPRHT 112

[Close]

BLAST of Spg002403 vs. ExPASy TrEMBL
Match: A0A067DKY6 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g031111mg PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.3e-18
Identity = 45/82 (54.88%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 38  EEDNDDKDSSTPLRPIFCLKNITDLKHFDEVEDCYFLEFDPFHSLNPRRLSFPKSTNDHS 97
           EED D     TP+RP+FCLK  TDLKHF+E EDC+ L+FDPF S++  +LS  K+ +   
Sbjct: 23  EEDED----GTPVRPVFCLKRNTDLKHFEETEDCFILDFDPFDSVDISKLSMSKTLDSAD 82

Query: 98  DSESELSLVAEKGQLACRDYPH 120
           D+ +++S++AEKGQ+ACRDYPH
Sbjct: 83  DANNDISVIAEKGQVACRDYPH 100

[Close]

BLAST of Spg002403 vs. ExPASy TrEMBL
Match: V4TRX6 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10022593mg PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.3e-18
Identity = 45/82 (54.88%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 38  EEDNDDKDSSTPLRPIFCLKNITDLKHFDEVEDCYFLEFDPFHSLNPRRLSFPKSTNDHS 97
           EED D     TP+RP+FCLK  TDLKHF+E EDC+ L+FDPF S++  +LS  K+ +   
Sbjct: 23  EEDED----GTPVRPVFCLKRNTDLKHFEETEDCFILDFDPFESVDISKLSVSKTLDSAD 82

Query: 98  DSESELSLVAEKGQLACRDYPH 120
           D+ +++S++AEKGQ+ACRDYPH
Sbjct: 83  DANNDISVIAEKGQVACRDYPH 100

[Close]

BLAST of Spg002403 vs. ExPASy TrEMBL
Match: A0A2H5PL55 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_146730 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.3e-18
Identity = 45/82 (54.88%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 38  EEDNDDKDSSTPLRPIFCLKNITDLKHFDEVEDCYFLEFDPFHSLNPRRLSFPKSTNDHS 97
           EED D     TP+RP+FCLK  TDLKHF+E EDC+ L+FDPF S++  +LS  K+ +   
Sbjct: 23  EEDED----GTPVRPVFCLKRNTDLKHFEETEDCFILDFDPFESVDISKLSVSKTLDSAD 82

Query: 98  DSESELSLVAEKGQLACRDYPH 120
           D+ +++S++AEKGQ+ACRDYPH
Sbjct: 83  DANNDISVIAEKGQVACRDYPH 100

[Close]

BLAST of Spg002403 vs. ExPASy TrEMBL
Match: A0A6I9SY67 (uncharacterized protein LOC105160269 OS=Sesamum indicum OX=4182 GN=LOC105160269 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.1e-17
Identity = 56/116 (48.28%), Postives = 73/116 (62.93%), Query Frame = 0


Query: 8   HLNSKRERESESETQSEGESKSRSICYIEGEEDNDDKDSSTPLRPIFCLKNITDLKHFDE 67
           H   K+ R  +  T +E   K R +  I     + DK   TPLRPIFCLKN  D+K F+E
Sbjct: 4   HSVVKKPRVEKISTMAE---KKRQVIEIGDSCSSPDK-KGTPLRPIFCLKNRDDIKKFEE 63

Query: 68  VEDCYFLEFDPFHSLNPRRLSFPKSTNDHSDSESELSLVAEKGQLACRDYPHPSAT 124
            EDC+ LEFDP+  L   +LSFPK   D  ++E+++ +VAEKGQ+ACRDYPHP  T
Sbjct: 64  QEDCFILEFDPYDDLEVLKLSFPK---DCGNAEADVRVVAEKGQVACRDYPHPRHT 112

[Close]

BLAST of Spg002403 vs. ExPASy TrEMBL
Match: A0A4D8ZLM8 (Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_026968 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.1e-17
Identity = 45/76 (59.21%), Postives = 58/76 (76.32%), Query Frame = 0


Query: 48  TPLRPIFCLKNITDLKHFDEVEDCYFLEFDPFHSLNPRRLSFPKSTNDHSDSESELSLVA 107
           TPLR IFCLKN  ++K F+E E+C+ LEFDP+++L+   L FP S  D +++E ELS VA
Sbjct: 58  TPLRSIFCLKNKEEIKKFEEQEECFILEFDPYNNLD--ALEFPSSIGDDNNAEEELSFVA 117

Query: 108 EKGQLACRDYPHPSAT 124
           EKGQ+ACRDYPHP  T
Sbjct: 118 EKGQVACRDYPHPRNT 131

[Close]

BLAST of Spg002403 vs. TAIR 10
Match: AT4G27660.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54150.1); Has 115 Blast hits to 109 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). )

HSP 1 Score: 83.6 bits (205), Expect = 2.0e-16
Identity = 45/101 (44.55%), Postives = 65/101 (64.36%), Query Frame = 0


Query: 20  ETQSEGESKSRSICYIEGEEDNDDKDSSTPLRPIFCLKNITDLKHFDEVEDCYFLEFDPF 79
           ET+ + +SK R     E EE+    +  TPLR IFCLK   D+K F+E EDC+ L+FDP 
Sbjct: 17  ETKKKTKSKRRKRLSKEEEEE----EEGTPLRGIFCLKTRQDMKIFEEKEDCFILDFDPN 76

Query: 80  HSLNPRRLSFPKSTNDHSDSESELSLVAEKGQLACRDYPHP 121
            S + R+L    S +  S+ + ++++V EKGQ+ACRD+PHP
Sbjct: 77  DSFDARKL----SDSPASECDDDVAIVHEKGQVACRDFPHP 109

[Close]

BLAST of Spg002403 vs. TAIR 10
Match: AT5G54150.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54148.1); Has 103 Blast hits to 99 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). )

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-14
Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 44  KDSSTPLRPIFCLKNITDLKHFDEVEDCYFLEFDPFHSLNPRRLSFPKSTNDHSDSESEL 103
           ++  +PLR I C+K   D+K F++ EDC+ L+F+PF S + +RLSF          + +L
Sbjct: 29  EEEGSPLRGILCVKTRRDMKRFEKTEDCFILDFNPFDSFDVKRLSF--------SLDKDL 88

Query: 104 SLVAEKGQLACRDYPHP 121
            ++ E GQ+ACRDYPHP
Sbjct: 89  EIIHESGQVACRDYPHP 97

[Close]

BLAST of Spg002403 vs. TAIR 10
Match: AT5G54148.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54150.1); Has 104 Blast hits to 102 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 6.9e-09
Identity = 28/77 (36.36%), Postives = 39/77 (50.65%), Query Frame = 0


Query: 44  KDSSTPLRPIFCLKNITDLKHFDEVEDCYFLEFDPFHSLNPRRLSFPKSTNDHSDSESEL 103
           ++  TPL  IFCLK   D+K F+E EDC+ L+FDPF S + ++L+F     +        
Sbjct: 5   EEDDTPLVGIFCLKTRQDMKRFEETEDCFILDFDPFDSFDVKKLTFTDDVRE-------- 61

Query: 104 SLVAEKGQLACRDYPHP 121
                       DYPHP
Sbjct: 65  ------------DYPHP 61

The following BLAST results are available for this feature:

BLAST of Spg002403 vs. NCBI nr


Match Name	E-value	Identity	Description
KDO42200.1	2.6e-18	54.88	hypothetical protein CISIN_1g031111mg [Citrus sinensis]	[more]
XP_006478089.1	2.6e-18	54.88	uncharacterized protein LOC102629006 [Citrus sinensis]	[more]
XP_006441265.1	2.6e-18	54.88	uncharacterized protein LOC18049348 [Citrus clementina] >ESR54505.1 hypothetical...	[more]
GAY53088.1	2.6e-18	54.88	hypothetical protein CUMW_146730 [Citrus unshiu]	[more]
XP_011075885.1	6.5e-17	48.28	uncharacterized protein LOC105160269 [Sesamum indicum]	[more]

BLAST of Spg002403 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg002403 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A067DKY6	1.3e-18	54.88	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g031111mg PE=4 SV=1	[more]
V4TRX6	1.3e-18	54.88	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10022593mg PE=4 ...	[more]
A0A2H5PL55	1.3e-18	54.88	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_146730 PE=4 SV=1	[more]
A0A6I9SY67	3.1e-17	48.28	uncharacterized protein LOC105160269 OS=Sesamum indicum OX=4182 GN=LOC105160269 ...	[more]
A0A4D8ZLM8	4.1e-17	59.21	Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_026968 PE=4 SV=1	[more]

BLAST of Spg002403 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27660.1	2.0e-16	44.55	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G54150.1	1.4e-14	42.86	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G54148.1	6.9e-09	36.36	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..47
None	No IPR available	PANTHER	PTHR33443	ZGC:112980	coord: 44..123
None	No IPR available	PANTHER	PTHR33443:SF21	BNAA03G12000D PROTEIN	coord: 44..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg002403.1	Spg002403.1	mRNA