Spg002394 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg002394
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	cyclic nucleotide-gated ion channel 1-like isoform X2
Location	scaffold6: 838633 .. 844208 (-)
RNA-Seq Expression	Spg002394
Synteny	Spg002394

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACCATCCAAAGATTGACGTATCGTTTGGGGGCAAAATAAATACAATATCTTCCTTGACGCCAGGCCCTTTAATGTCGTCTCTGTCGTTGACAAATCCCACAAATGCAGAGACAAAACTCTTCAGTCCAAACCCACCTTCTTCGACCTTCGCCGCGGGTCCCAAAAGCACCAAATTTCTCATTTCCGATCATCTAAAAGTCACACTCGCCTTGAGTCGACCAGTCAATTTTCAGACGAAACTTTTATCATTCATAATGGCAGTTCGGGGTTTTCCTTGCAAGTTTTATAGCTTCAACGAGGGAGTCGGTGTTTTCTTTAATTTCTTGCTGTTCCCTTTGGTGGGTATGGTTGATTTCTCGTGCATTACGAACTTCCCTAATCTGGGTAATGAGTTTTGGTTCCAATCGTTTCGTTTTCAGTGTTGTGGTTTTGATTTTTGAAGTTGGTTTGAAATGGATGCTTGGTGATCTTACTGTGGCTATGGATAATCTTCCTGTATTTCCTCTGTGTGATTTAGTGGGTTTCTGTTGCTTTTTACAATATGATGTAAGCAGTTGATCTTTTTGTACGGATTCTTCTTGTGGGTGGTTTCATGACAGTGGAGTTTATGAGGTTGAATTCATATGGAGAGACTCAGAATCCTCATTTTCAAACTGACTTCTAATTGGATTTCTGGATTTTGTTTGCCCCTTTTTTTGTGTGCTTGTTTCTATGAGTTGATTTGAGTGCATGTTCATTATTTTGAAGAAATGGATGCTCATAGCTTCATTGAGGGTAGTGAAATCTCCTTTTTTCTCTTTTGAATCTTTTCAACTATTGGTCACTTGGATAGGACCTTGATCATCCTGACTTCTAATCAATTTGTTACTGGTCAGGTTTCAAGATCCCAGGCTAGAGAAAACTTGTGGAGTAGAGTTTCATAGTGGATGAGTAAATGAATTCAGCTCTCCTCAGAGGGTTGGCATCTAGTTCTGATGGAACTAGAAACACTGAGAAGCTATTGAAATCTTCTTCCTCTAATAATCGCATGCCTGAAGGCTTGCACTCAGGGAAGAAAATTCTTGATCCACAAGGGCCTTTTCTTCAAAGTTGGAACAAGATGTTTGTGCTGTCTTGTGTGATTGCTGTATCGTTGGATCCTCTGTTCTTTTATGTTCCTGTGATTGATAATAGAAGGAAGTGTCTTAGGTTAGATGAGAAAGTGGAGACTGTAGTCTGTATATTGCGATTATTTACAGACTTATTCTATGTTGTGCATATTGTTTTTCAGTTTCGTACAGGATTTATTGCTCCCTCTTCCCGAGTATTTGGAAGAGGTGTTTTAGTAGAAGATTATCGGGCGATAGCAATGAGGTATCTGTCATCATACTTTCTAATTGACATTTCTTCAGTCCTCCCACTTCCACAGGTGAGGAAAGCTTCTTGGGACTTGAGAGTATGTCTGCTCTACTGTCAATTTGCTATCAGCTTTTGCTAAGGGGATTCTTCATTCATGCATCTGTTTGATTCAATCCTTTCACTCTCACTTTCTTGAAATGGTTTGAACAAATTGTCAGTTCCTTGTTTTCCAATGTCAATTCCATTGATTCAGCATCAATTGATTATTACTTCTATATGCTTTTTGGAAATTTCCACCCGAGCTACTTTGAAATATTTTTTGGGTTATTTCCTTGTAATATCTGCATGATATGGAGATGCAGTCAGTAATATGTACTCTGTTATGATTAATCTTGCAACGAACAAATTTTTTAGTAGGAGTTAAAATGTGATGGCTAGCCTGAAAATTATTTCACAGGTATTTGAGAACTGCAAGAAATTCAATTTCCTTTTAGACTTAGTTCTTTGTAGACAATAAGTTTATATTGCAAAGTTAGGTTCTACTTATTTCATGGTTGCCAGTGCAACGTTCTGCTCTTTAATGCATAAAAAAGCCCCATTTCCTGGTAGCCAGGACTTTCAATTTTGAAATGTTTTTATGATATTCGTCTTCAGATTTACATACTACAATAGTAACACAAACCATATTTGTAATCCCTGTGGGATTATTTCAACCTGAGTGAAGCAATGCTGGACTGTGAGCTTGATACCCTCAATTGTTTGAAGGATTGGTTCAACTCATGTTGAGGTTGAAAAAGATTATGATCAACTATTATTTCTCAAGTTCATTTGATTTTGATATGTGAATTGTCCTGCTTTTTTGTAATGTGCCTAGGTGGTGATTCTGATAATCGTCCCTGTAATGGGAAGTTCGAGACCGTCGATTACGAAGGACTTGCTGAAATTTGCTGTATTATGTCAACTTGTGCCAAGGTTTCTTCGAATCTATCCACTGTATAAAGAAGTTACAAGGACCTCGGGCATACTCATCGAAACTGCTTGGGCAGGAGCTGCATTTAATCTATTGCTGTACATGCTAGCCGGTCATGTTAGTTTTCTTCTATGCTTCTTAGGAGGAAGCAGGATTTTAATTCAAAGTGCCTAGTCATTTTTATCAACTCTTGCTGTACATTGATGACTTGGTTGGTTTTTTCTTGTAGTGACATTTTCCTTTTCTCTTACATGTCTTGCCATTCTTAGATATTTGGAGCAACCTGGTACTTATGTTCCATAGAACGAGAAGCCCAGTGCTGGCACGATGCTTGTAGCAAGCATCCTGGCTGTAACTCTACTTCCTTGCACTGTGATTACAATTCCAGTGTTGGAGGGAACCTATTCCTCAATGTTTCTTGCCCAATTGAAAAGCCAAATGTAGGACATTTTAACTTCGGAATATTCCTTCAAGCCCTTCGATCTGATATTGTGGAGTCAGATTTTCCGAAGAAGTTCCTTCACTGCTTTTGGTGGGGCTTAAGGAATCTAAGGTATACTGTTCACTGTTCTTTTGGGATATTCTTTCTGATTGAGAGATCTGCTATAAATTTATGAGCATCCTTGTGAAAAAGTGTTTTTATATTCATAATTATGTGGTTCCTGTTGCTTTCTCTGTATATTTGTTGAGTTGAAGCAGTTCCTACACATATCATTCTGCATACGACCTAGTCCACTGCAGGCCGCCCCGAGTTTTATACAATTCTGTGCTTGTCTAAGCTGCTCTTAATTTAATTGGCTTAAAACCACAGTTCTATTGGTCATGTATATTGTTCACTTGCAAATATTTGTATAAGAGCTACACGGTTCTGAACATGTAATATGGTTTCAGTCGGATAAAACTTATGCTAAATGATTAGAGCTCACAGAAAGATTTGCTTAATTTAATACGTTGCTTGAGACATTGTGCATAAATTTGAGTCCTCTGGCACACGTCCTCGGCTACAAGAATACTGAATGCGTGGTGTAATAATGATACTCTCTGCAGTATTTTGTTACTTCAGCTAGACTAGTTATAATCCATTCACCTCTAGAATTTGTATGATGTTGAACATTTTGCCATTGAGTATTGAAGTAGTTTTCTGCATACATGTACTCTCTTGGATGCAGTTCTTTGGGTCAAAATCTCACTACAAGTACTTGCACATGGGAAAACTGCTTCGCCATTTTGGTTTGCATCTCTGGCTTAGTGTTGTTTGCGTCTCTCCTAGGCAACGTCCAGGTTGGTACTCGTTATTCTTGTTGCTGTTACGGCATGTTTGGTAGTGATTTTGGCCAAACATGCCCTTAGTCATCTTTCTTAGGCTGGCATAGAATCACTTTCCTTTACAAGAATGAAAGTTGAGAATTTGATTATGAGTTGTTGAGAAGCACATAGGTTTACTTGTTATAAAAGCCTTTGCACTGTTTGATGCATATTTTACATTGATATGGTTTTGGAACCCTTATCCATTGGGTTATGTTTGAAATCTTGTGCCATTCTTCTTAGAATGATGAGTCTCTCTTCATGTCAAACTTGCTGTGGAACAGATGTATTGGCGATCCACAAACACAAGGGTGGAGGAGATGAGAGTGAGAAGGAGAGATGTTGAACAATGGATGTCGCATCGCTTACTCCCTGAGAATATGAGGGAGCGGGTTCGAAGGTATAAACATTACACGTGGCTAGAAACCAGAGGTGTTGATGAACACAATCTGCTGCTTAATCTGCCTAGAGACCTCCAACGAGATATCAAGCGCCATCTTTGCTTGCCTTTGCTTATGCGAGTGAGTTTCTTTTGTTTTGTTAACATGTAGACTACGTATGAATGTATGTATGTGTATCATTGACAAGCTTAAGAATGGTTTTGAAATGATTTGAGAGTAGTGTCTTAAAGTGAAACACACACGCACTTATATACATTTTCTCTATAAGCACTTTTGGAGAAAATACAAGCTCGGTTACACACACATTGCTAGCTCAACTTTTTTTAATTGATTCTGATGATTTATGTACGTTTTCCATTAAGGTTCCAATGTTTGAAAAGATGGATGAACAATTGTTGGACGCGATGTGTGCCCGTCTCAAGCCAGTGTTGTACACACAAGAAAGCTGCGTTGTTCGGGAAGGCGATCCAGTTGACGAGATGCTCTTCATCATGCGAGGCAAGCTCCTAACCATGACTACAAATGGTGGGAGAACTGGTTTCTTCAACTCTGATTTCCTCATGGCTGGTGATTTCTGTGGAGAAGAGCTACTGACTTGGGCTCTAGACCCTCATTCCTCAACCAATCTCCCCATTTCAACTCGAACCGTCCGATCCCTGACAGAAGTCGAAGCATTTGCTTTTAAACCCGATGACTTGAAAGTTGTAGCCTCTCAATACCGCAGGCTTCACAGCAAGCAGCTGCGCCAGATATTCAGATTCTACTCGCACCAATGGAGAACCTGGGCAGCTTGCTTTGTACAAGCAGCATGGCGGCGCCATCGAAGAAAGCAGCTAAGAGAGTCTCTCAGGGAAGAAGAGAGTAGGTTGAAAGACGCATTGGCTTGTCTCGAGGGGCGGTCACCAAGTTTAGGCGCCACCATTTATGCATCTAGATTCGCTTCTAACATGCTTCGCGCCATGAGAAGGAATGGTACTAGGAAAGCTAGGATGTCCATGCTGCTTCAGAAGCCAGCAGAGCCTGATTTTACCTTGGAAGATAACAACACATAGCCATACACTAGAAAGATAACACACACATTTGTTGTTTATGATTCTATATTAAGCTGTTCTTATTTGAAATGGTTCATTTCATTGGGCTTGTGAGAATTGTCTTTGCAGCTCTCTCTTTCTCCATCCGAAAAAATTATTGCCTCGACCAGAAAATCTGTATCTCCTGATAACCATTGGATACAGATTCTAAGTGCTTTTGCAATTTCTCTTTTATACATCAGATGGTAAAAGATTACCGACCACGTTGTGGTCGTTCCTCGAATAATTTCTCCTCTCTCCTTGGCAGAGGGATACATTATTGAAACCTTCAAAAAGTAGAGTTTGGTTGTAATGCACTAAAGCAAAAAATGTGTTTTTGCTTTTTGTTATGACAGATTGACCAGTCTATGGGAGAGGGGTCACAGTTGCAGTGTAAATTATTGAACACTTGCCAACATAAATATCTGGTGTTTTTCTGCTTTTTATTATGTTATGCCACATTCAATTGTGAAGTGATTGATAAGATTGAG

mRNA sequence

ATGTCGTCTCTGTCGTTGACAAATCCCACAAATGCAGAGACAAAACTCTTCAGTCCAAACCCACCTTCTTCGACCTTCGCCGCGGGTCCCAAAAGCACCAAATTTCTCATTTCCGATCATCTAAAAGTCACACTCGCCTTGAGTCGACCAGTCAATTTTCAGACGAAACTTTTATCATTCATAATGGCAGTTCGGGGTTTTCCTTGCAAGTTTTATAGCTTCAACGAGGGAGTCGGTGTTTTCTTTAATTTCTTGCTGTTCCCTTTGGTGGGTATGGTTGATTTCTCGTGCATTACGAACTTCCCTAATCTGGTTGGTTTGAAATGGATGCTTGGTGATCTTACTGTGGCTATGGATAATCTTCCTGTATTTCCTCTGTGTGATTTAGTGGGTTTCAAGATCCCAGGCTAG

Coding sequence (CDS)

ATGTCGTCTCTGTCGTTGACAAATCCCACAAATGCAGAGACAAAACTCTTCAGTCCAAACCCACCTTCTTCGACCTTCGCCGCGGGTCCCAAAAGCACCAAATTTCTCATTTCCGATCATCTAAAAGTCACACTCGCCTTGAGTCGACCAGTCAATTTTCAGACGAAACTTTTATCATTCATAATGGCAGTTCGGGGTTTTCCTTGCAAGTTTTATAGCTTCAACGAGGGAGTCGGTGTTTTCTTTAATTTCTTGCTGTTCCCTTTGGTGGGTATGGTTGATTTCTCGTGCATTACGAACTTCCCTAATCTGGTTGGTTTGAAATGGATGCTTGGTGATCTTACTGTGGCTATGGATAATCTTCCTGTATTTCCTCTGTGTGATTTAGTGGGTTTCAAGATCCCAGGCTAG

Protein sequence

MSSLSLTNPTNAETKLFSPNPPSSTFAAGPKSTKFLISDHLKVTLALSRPVNFQTKLLSFIMAVRGFPCKFYSFNEGVGVFFNFLLFPLVGMVDFSCITNFPNLVGLKWMLGDLTVAMDNLPVFPLCDLVGFKIPG

Homology

[Close]

BLAST of Spg002394 vs. NCBI nr
Match: XP_008439337.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 62.8 bits (151), Expect = 2.7e-06
Identity = 37/57 (64.91%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 18 SPNPPSSTFAAGPKSTKFLISDHLKVTLALSRPVNFQTKLLSF-IMAVRGFPCKFYS 74
          SPNPPSST AAGP  T+FL SDHL+ TL   R VNF+ K++SF IMAV  F  KFYS
Sbjct: 6  SPNPPSSTSAAGPNCTQFLHSDHLRATLYPGR-VNFRMKVVSFIIMAVWNFSSKFYS 61

[Close]

BLAST of Spg002394 vs. ExPASy TrEMBL
Match: A0A1S3AZ79 (cyclic nucleotide-gated ion channel 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484155 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-06
Identity = 37/57 (64.91%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 18 SPNPPSSTFAAGPKSTKFLISDHLKVTLALSRPVNFQTKLLSF-IMAVRGFPCKFYS 74
          SPNPPSST AAGP  T+FL SDHL+ TL   R VNF+ K++SF IMAV  F  KFYS
Sbjct: 6  SPNPPSSTSAAGPNCTQFLHSDHLRATLYPGR-VNFRMKVVSFIIMAVWNFSSKFYS 61

[Close]

BLAST of Spg002394 vs. ExPASy TrEMBL
Match: A0A1S3AZ82 (cyclic nucleotide-gated ion channel 1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103484155 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 6.0e-04
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 18 SPNPPSSTFAAGPKSTKFLISDHLKVTLALSRPVNFQTKLLSFIM 63
          SPNPPSST AAGP  T+FL SDHL+ TL   R VNF+ K++SFI+
Sbjct: 6  SPNPPSSTSAAGPNCTQFLHSDHLRATLYPGR-VNFRMKVVSFII 49

The following BLAST results are available for this feature:

BLAST of Spg002394 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439337.1	2.7e-06	64.91	PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis melo]	[more]

BLAST of Spg002394 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg002394 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AZ79	1.3e-06	64.91	cyclic nucleotide-gated ion channel 1-like isoform X2 OS=Cucumis melo OX=3656 GN...	[more]
A0A1S3AZ82	6.0e-04	64.44	cyclic nucleotide-gated ion channel 1-like isoform X3 OS=Cucumis melo OX=3656 GN...	[more]

BLAST of Spg002394 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg002394.1	Spg002394.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016020	membrane