Spg002388 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg002388
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	60S ribosomal protein L9-like
Location	scaffold6: 339166 .. 341299 (+)
RNA-Seq Expression	Spg002388
Synteny	Spg002388

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAGCCGCAGCAGAACCGGTTTTCTGTATATATAAATCTTCTCACAAGGTTTCTCCGCCTTCTGCCGCAGCCTCCGAGGTTTTCTGCCGCCGCTTCCGTGTGTCTCTCTTCACTGAAAAATGAAAACCATTCTTTCATCCGAGACTATGGATATCCCAGATGGGGTCAAAATCAAGGTCAATGCCAAGATCATCGAGGTTGAAGGTCCTCGTGGTAAGCTTGTTCGTAACTTTAAGCACCTTAATCTCGACTTTCAACTCATCACTGACGAGGCCACTGGCAAGAAGAAGCTCCGGATCGAAGCATGGTTTGGCTCCAGGAAGACATCCGCCGCTATTCGTACCGCTCTCAGCCATGTTGAGAACCTTATTACAGGTGTTACCAAGGGCTATCGTTACAAGATGCGTTTCGTCTACGCCCACTTTCCCATTAATGCTAGCATTACAAACGGCAGCAAGTCCATTGAGATTCGTAACTTTCTTGGAGAAAAGAAGGTATTATACTCTCTATGCTTCTAATATTTTTCTATTTTGATATATTTGGTTTGACCATCAATTTTTTTTTTCGTGTGCTCGATCTCGTTGCTTAATTAATGTTTTTCTTGGAAATATATATTTCAAAGTAACCCTCTGTTTATTAGGAATTAGCCTTCCTTTAGTTATGCTGGTTTTCTTGAATTAATGACAGGTTCCATATTTTAATTTCTACTGTATTCGTTAATGACTTGTTTTCTAACTCGTGCTGTGGTTGGATACAACATATTTTATCCATCGGAATCTGTTTTGTGTTCTGGCTTTACATGAAAAATAAACATTCTAATGTTCCTTAGCTTTAACCAATTTCTATCAGGTGGGTGGAATTTTGTCTTGATCAAATTTTGCTATTGCTTGTTTTCATGCATGTTTGAATTGCCATTTTTGCCAATAGGTACTCCTTCGTCACATGATTTCTTCTTGATGTACATATGGGTTGGGACCTAGGGAGCAATTAGAAGTTAGAAGTATATTTTGGGCAACAGTCATTCCAACCTCATTCCGAGTTCTGTTGGTAATTCATATTTCGGTTTAGTACCAAAACTAACATATAAAGAAGCATAGGCCAATGCCAAATCTACATCTTCAGAATATATCATTTTCAGTGGTCAGAGGGAAGAAGTTCAATGTATATGATGGTCACCTAAACACCTACTCCTGTGAGAGGTGATACTCATAGATTTAAAAATAGAATGGTTGCTTCAATTCTCTTATCTCACTTACTTTCTAATTGTTATCGACAAGCCTATTTCTTATAGAAAAGAGCCGTTGAAAATTCTTTTGTAGCATGGCTTTCTTAAGTGTCATCCTTGGCTAAAATTTTACTGTTTCTGTGAATTTGTTATGAATTGTTGCATCAGGTGAGAAAGGTGGATATGCTTGATGGAGTTTCCATTACCCGTTCTGAGAAAGTGAAAGATGAGTTAGTTTTGGATGGCAATGATATTGAACTTGTTTCACGGTCTTGTGCCCTTATAAACCAGGTTTGTCTTTATCACACTCGATAAAAGAACAGAGTAAATGGTGCATTCCTCATATCATTCTGTGGTTCATTCTTCCTTGCCTTCTTTTGCAGAAATGTCATGTCAAGAACAAGGATATACGGAAGTTCCTTGATGGTATCTATGTCAGTGAGAAGGGGACCATTGTTGGAGAGGAGTGATCAATAGAATTGTAGGTTATATCTGCTCTTTGTTTCGAGAGTAGTTTATTTTCTTTTGGAATTGTTTTTTCACAACTAATTGCGTAATTTTGTGATGTTTCATGGGAAACCTTTTAAACTTTATTACAGTTTTGTTTTATGGATGTTTTTTATTCGAGGCACAAAACTGGTGTTCGGTAAACCTCATCTAAAACCCTTTATGTCGATTGATTTCATATATTCCATTGCAAGATGGAAGTCTGAAAAGTTAGCAAGCAAAAATGGAAAGAGAGTACACAGTACCAGCCATCAATCCCTATCCTGAGAATGATGGATTTAAATTTGGATGCCAATATCACATCGGATGCATTTACATTTTGTCCAAATAAAGGAGATTGGGGAGGTAGGTGTTTGGGAATTAACTTCAAGAATGTGTTACGTTTTCCCAATTCAAACAAGC

mRNA sequence

ATGAAAACCATTCTTTCATCCGAGACTATGGATATCCCAGATGGGGTCAAAATCAAGGTCAATGCCAAGATCATCGAGGTTGAAGGTCCTCGTGGTAAGCTTGTTCGTAACTTTAAGCACCTTAATCTCGACTTTCAACTCATCACTGACGAGGCCACTGGCAAGAAGAAGCTCCGGATCGAAGCATGGTTTGGCTCCAGGAAGACATCCGCCGCTATTCGTACCGCTCTCAGCCATGTTGAGAACCTTATTACAGGTGTTACCAAGGGCTATCGTTACAAGATGCGTTTCGTCTACGCCCACTTTCCCATTAATGCTAGCATTACAAACGGCAGCAAGTCCATTGAGATTCGTAACTTTCTTGGAGAAAAGAAGGTGAGAAAGGTGGATATGCTTGATGGAGTTTCCATTACCCGTTCTGAGAAAGTGAAAGATGAGTTAGTTTTGGATGGCAATGATATTGAACTTGTTTCACGGTCTTGTGCCCTTATAAACCAGAAATGTCATGTCAAGAACAAGGATATACGGAAGTTCCTTGATGGTATCTATGTCAGTGAGAAGGGGACCATTGTTGGAGAGGAGTGA

Coding sequence (CDS)

ATGAAAACCATTCTTTCATCCGAGACTATGGATATCCCAGATGGGGTCAAAATCAAGGTCAATGCCAAGATCATCGAGGTTGAAGGTCCTCGTGGTAAGCTTGTTCGTAACTTTAAGCACCTTAATCTCGACTTTCAACTCATCACTGACGAGGCCACTGGCAAGAAGAAGCTCCGGATCGAAGCATGGTTTGGCTCCAGGAAGACATCCGCCGCTATTCGTACCGCTCTCAGCCATGTTGAGAACCTTATTACAGGTGTTACCAAGGGCTATCGTTACAAGATGCGTTTCGTCTACGCCCACTTTCCCATTAATGCTAGCATTACAAACGGCAGCAAGTCCATTGAGATTCGTAACTTTCTTGGAGAAAAGAAGGTGAGAAAGGTGGATATGCTTGATGGAGTTTCCATTACCCGTTCTGAGAAAGTGAAAGATGAGTTAGTTTTGGATGGCAATGATATTGAACTTGTTTCACGGTCTTGTGCCCTTATAAACCAGAAATGTCATGTCAAGAACAAGGATATACGGAAGTTCCTTGATGGTATCTATGTCAGTGAGAAGGGGACCATTGTTGGAGAGGAGTGA

Protein sequence

MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRIEAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNFLGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLDGIYVSEKGTIVGEE

Homology

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BLAST of Spg002388 vs. NCBI nr
Match: XP_022922852.1 (60S ribosomal protein L9-like [Cucurbita moschata] >XP_022984942.1 60S ribosomal protein L9 [Cucurbita maxima] >XP_023553154.1 60S ribosomal protein L9 [Cucurbita pepo subsp. pepo] >KAG6576613.1 60S ribosomal protein L9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 380.6 bits (976), Expect = 8.3e-102
Identity = 193/194 (99.48%), Postives = 193/194 (99.48%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN SKSIEIRNF
Sbjct: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSSKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTIVGEE 195
           GIYVSEKGTIVGEE
Sbjct: 181 GIYVSEKGTIVGEE 194

[Close]

BLAST of Spg002388 vs. NCBI nr
Match: XP_022945825.1 (60S ribosomal protein L9-like [Cucurbita moschata] >XP_023542544.1 60S ribosomal protein L9-like [Cucurbita pepo subsp. pepo] >KAG6574272.1 60S ribosomal protein L9, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013341.1 60S ribosomal protein L9, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 379.4 bits (973), Expect = 1.8e-101
Identity = 192/194 (98.97%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTILSSE+MDIPDGVKIKV+AKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI
Sbjct: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF
Sbjct: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTIVGEE 195
           GIYVSEKGTIVGEE
Sbjct: 181 GIYVSEKGTIVGEE 194

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BLAST of Spg002388 vs. NCBI nr
Match: XP_022968434.1 (60S ribosomal protein L9-like [Cucurbita maxima])

HSP 1 Score: 377.1 bits (967), Expect = 9.2e-101
Identity = 191/194 (98.45%), Postives = 193/194 (99.48%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTILSSE+MDIPDGVKIKV+AKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI
Sbjct: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN SKSIEIRNF
Sbjct: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSSKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTIVGEE 195
           GIYVSEKGTIVGEE
Sbjct: 181 GIYVSEKGTIVGEE 194

[Close]

BLAST of Spg002388 vs. NCBI nr
Match: XP_008462900.1 (PREDICTED: 60S ribosomal protein L9-like [Cucumis melo] >XP_016902942.1 PREDICTED: 60S ribosomal protein L9-like [Cucumis melo] >KAA0056651.1 60S ribosomal protein L9-like [Cucumis melo var. makuwa] >TYK04612.1 60S ribosomal protein L9-like [Cucumis melo var. makuwa])

HSP 1 Score: 375.9 bits (964), Expect = 2.0e-100
Identity = 190/194 (97.94%), Postives = 193/194 (99.48%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTILSSE+MDIPDGVKIKV+AKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI
Sbjct: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF
Sbjct: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTIVGEE 195
           GIYVSEKGTIVG +
Sbjct: 181 GIYVSEKGTIVGAD 194

[Close]

BLAST of Spg002388 vs. NCBI nr
Match: XP_004137145.1 (60S ribosomal protein L9 [Cucumis sativus] >KGN53768.1 hypothetical protein Csa_014503 [Cucumis sativus])

HSP 1 Score: 375.6 bits (963), Expect = 2.7e-100
Identity = 188/194 (96.91%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTILSSE+MDIPDGVKIKV+AKIIEVEGPRGKLVRNFKHLNLDFQLITD+ATGKKKLRI
Sbjct: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDDATGKKKLRI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSK+IEIRNF
Sbjct: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKAIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTIVGEE 195
           GIYVSEKGTI+GE+
Sbjct: 181 GIYVSEKGTIIGED 194

[Close]

BLAST of Spg002388 vs. ExPASy Swiss-Prot
Match: P30707 (60S ribosomal protein L9 OS=Pisum sativum OX=3888 GN=RPL9 PE=2 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 3.3e-93
Identity = 174/194 (89.69%), Postives = 184/194 (94.85%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTILSSETM+IPDGV IKVNAK+IEVEGPRGKLVR+FKHLNLDF LITDE  GKKKL+I
Sbjct: 1   MKTILSSETMNIPDGVTIKVNAKVIEVEGPRGKLVRDFKHLNLDFDLITDE-NGKKKLKI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           +AWFGSRKTSAAIRTALSHVENLITGVTKG+RYKMRFVYA FPINASITN +KSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGFRYKMRFVYADFPINASITNDNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVD+LDGVSI RSEKVKDE+VLDGNDIELVSRSCALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVDLLDGVSIIRSEKVKDEVVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTIVGEE 195
           GIYVSEKG +V EE
Sbjct: 181 GIYVSEKGAVVVEE 193

[Close]

BLAST of Spg002388 vs. ExPASy Swiss-Prot
Match: P49209 (60S ribosomal protein L9-1 OS=Arabidopsis thaliana OX=3702 GN=RPL9B PE=1 SV=3)

HSP 1 Score: 331.6 bits (849), Expect = 5.8e-90
Identity = 165/194 (85.05%), Postives = 180/194 (92.78%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTILSSETMDIPD V IKV+AK+IEVEGPRGKLVR+FKHLNLDFQLI D  TGKKKL+I
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           ++WFG+RKTSA+IRTALSHV+NLI+GVT+G+RYKMRFVYAHFPINASI    KSIEIRNF
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGV+I RSEKVKDE+VLDGNDIELVSRSCALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTIVGEE 195
           GIYVSEK  IV EE
Sbjct: 181 GIYVSEKSKIVEEE 194

[Close]

BLAST of Spg002388 vs. ExPASy Swiss-Prot
Match: Q9SZX9 (60S ribosomal protein L9-2 OS=Arabidopsis thaliana OX=3702 GN=RPL9D PE=2 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 3.8e-89
Identity = 161/194 (82.99%), Postives = 179/194 (92.27%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTILSSETMDIPDGV IKVNAK+IEVEGPRGKL R+FKHLNLDFQLI D+ TGK++L+I
Sbjct: 1   MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           ++WFGSRKTSA+IRTALSHV+NLI GVT+G+ Y+MRFVYAHFPINASI   +KSIEIRNF
Sbjct: 61  DSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGV I RSEKVKDE++L+GNDIELVSRSCALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTIVGEE 195
           GIYVSEKG I  EE
Sbjct: 181 GIYVSEKGKIAVEE 194

[Close]

BLAST of Spg002388 vs. ExPASy Swiss-Prot
Match: P49210 (60S ribosomal protein L9 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL9 PE=2 SV=3)

HSP 1 Score: 312.4 bits (799), Expect = 3.6e-84
Identity = 154/190 (81.05%), Postives = 175/190 (92.11%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTIL+SETM+IP+GV ++V AK++ VEGPRGKL RNFKHLNLDFQL+     G +KL++
Sbjct: 1   MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLL----EGGRKLQV 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           +AWFG+R+T AAIRTA+SHV+NLITGVTKGYRYKMRFVYAHFPINASITN + +IEIRNF
Sbjct: 61  DAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDML+GV+I RSEKVKDELVLDGNDIELVSRS ALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTI 191
           GIYVS+KGTI
Sbjct: 181 GIYVSDKGTI 186

[Close]

BLAST of Spg002388 vs. ExPASy Swiss-Prot
Match: Q90YW0 (60S ribosomal protein L9 OS=Ictalurus punctatus OX=7998 GN=rpl9 PE=2 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 7.6e-58
Identity = 114/194 (58.76%), Postives = 142/194 (73.20%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTILS++T+DIPD V + +  + + V+GPRG L R F H+NL+ +L+  +   +KKLR+
Sbjct: 1   MKTILSTQTVDIPDNVDVTLKGRTVSVKGPRGVLRREFNHINLELRLLGKK---QKKLRV 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           + W+G+RK  A +RT  SHV+N+I GVT G+RYKMR VYAHFPIN  I      +EIRNF
Sbjct: 61  DKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQETGSLVEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEK +R+V M  GV+   S   KDELVL+GNDIELVS S ALI Q   VKNKDIRKFLD
Sbjct: 121 LGEKYIRRVRMRPGVNCALSAAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLD 180

Query: 181 GIYVSEKGTIVGEE 195
           GIYVSEKGT+V  E
Sbjct: 181 GIYVSEKGTVVEPE 191

[Close]

BLAST of Spg002388 vs. ExPASy TrEMBL
Match: A0A6J1J3I2 (60S ribosomal protein L9 OS=Cucurbita maxima OX=3661 GN=LOC111483062 PE=3 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 4.0e-102
Identity = 193/194 (99.48%), Postives = 193/194 (99.48%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN SKSIEIRNF
Sbjct: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSSKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTIVGEE 195
           GIYVSEKGTIVGEE
Sbjct: 181 GIYVSEKGTIVGEE 194

[Close]

BLAST of Spg002388 vs. ExPASy TrEMBL
Match: A0A6J1E4H2 (60S ribosomal protein L9-like OS=Cucurbita moschata OX=3662 GN=LOC111430709 PE=3 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 4.0e-102
Identity = 193/194 (99.48%), Postives = 193/194 (99.48%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN SKSIEIRNF
Sbjct: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSSKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTIVGEE 195
           GIYVSEKGTIVGEE
Sbjct: 181 GIYVSEKGTIVGEE 194

[Close]

BLAST of Spg002388 vs. ExPASy TrEMBL
Match: A0A6J1G231 (60S ribosomal protein L9-like OS=Cucurbita moschata OX=3662 GN=LOC111449954 PE=3 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 8.9e-102
Identity = 192/194 (98.97%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTILSSE+MDIPDGVKIKV+AKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI
Sbjct: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF
Sbjct: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTIVGEE 195
           GIYVSEKGTIVGEE
Sbjct: 181 GIYVSEKGTIVGEE 194

[Close]

BLAST of Spg002388 vs. ExPASy TrEMBL
Match: A0A6J1HZM6 (60S ribosomal protein L9-like OS=Cucurbita maxima OX=3661 GN=LOC111467681 PE=3 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 4.4e-101
Identity = 191/194 (98.45%), Postives = 193/194 (99.48%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTILSSE+MDIPDGVKIKV+AKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI
Sbjct: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN SKSIEIRNF
Sbjct: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSSKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTIVGEE 195
           GIYVSEKGTIVGEE
Sbjct: 181 GIYVSEKGTIVGEE 194

[Close]

BLAST of Spg002388 vs. ExPASy TrEMBL
Match: A0A1S3CHZ9 (60S ribosomal protein L9-like OS=Cucumis melo OX=3656 GN=LOC103501171 PE=3 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 9.9e-101
Identity = 190/194 (97.94%), Postives = 193/194 (99.48%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTILSSE+MDIPDGVKIKV+AKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI
Sbjct: 1   MKTILSSESMDIPDGVKIKVHAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF
Sbjct: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTIVGEE 195
           GIYVSEKGTIVG +
Sbjct: 181 GIYVSEKGTIVGAD 194

[Close]

BLAST of Spg002388 vs. TAIR 10
Match: AT1G33120.1 (Ribosomal protein L6 family )

HSP 1 Score: 331.6 bits (849), Expect = 4.1e-91
Identity = 165/194 (85.05%), Postives = 180/194 (92.78%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTILSSETMDIPD V IKV+AK+IEVEGPRGKLVR+FKHLNLDFQLI D  TGKKKL+I
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           ++WFG+RKTSA+IRTALSHV+NLI+GVT+G+RYKMRFVYAHFPINASI    KSIEIRNF
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGV+I RSEKVKDE+VLDGNDIELVSRSCALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTIVGEE 195
           GIYVSEK  IV EE
Sbjct: 181 GIYVSEKSKIVEEE 194

[Close]

BLAST of Spg002388 vs. TAIR 10
Match: AT1G33140.1 (Ribosomal protein L6 family )

HSP 1 Score: 331.6 bits (849), Expect = 4.1e-91
Identity = 165/194 (85.05%), Postives = 180/194 (92.78%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTILSSETMDIPD V IKV+AK+IEVEGPRGKLVR+FKHLNLDFQLI D  TGKKKL+I
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           ++WFG+RKTSA+IRTALSHV+NLI+GVT+G+RYKMRFVYAHFPINASI    KSIEIRNF
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGV+I RSEKVKDE+VLDGNDIELVSRSCALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTIVGEE 195
           GIYVSEK  IV EE
Sbjct: 181 GIYVSEKSKIVEEE 194

[Close]

BLAST of Spg002388 vs. TAIR 10
Match: AT4G10450.1 (Ribosomal protein L6 family )

HSP 1 Score: 328.9 bits (842), Expect = 2.7e-90
Identity = 161/194 (82.99%), Postives = 179/194 (92.27%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLRI 60
           MKTILSSETMDIPDGV IKVNAK+IEVEGPRGKL R+FKHLNLDFQLI D+ TGK++L+I
Sbjct: 1   MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60

Query: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKSIEIRNF 120
           ++WFGSRKTSA+IRTALSHV+NLI GVT+G+ Y+MRFVYAHFPINASI   +KSIEIRNF
Sbjct: 61  DSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSITRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGV I RSEKVKDE++L+GNDIELVSRSCALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTIVGEE 195
           GIYVSEKG I  EE
Sbjct: 181 GIYVSEKGKIAVEE 194

The following BLAST results are available for this feature:

BLAST of Spg002388 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922852.1	8.3e-102	99.48	60S ribosomal protein L9-like [Cucurbita moschata] >XP_022984942.1 60S ribosomal...	[more]
XP_022945825.1	1.8e-101	98.97	60S ribosomal protein L9-like [Cucurbita moschata] >XP_023542544.1 60S ribosomal...	[more]
XP_022968434.1	9.2e-101	98.45	60S ribosomal protein L9-like [Cucurbita maxima]	[more]
XP_008462900.1	2.0e-100	97.94	PREDICTED: 60S ribosomal protein L9-like [Cucumis melo] >XP_016902942.1 PREDICTE...	[more]
XP_004137145.1	2.7e-100	96.91	60S ribosomal protein L9 [Cucumis sativus] >KGN53768.1 hypothetical protein Csa_...	[more]

BLAST of Spg002388 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P30707	3.3e-93	89.69	60S ribosomal protein L9 OS=Pisum sativum OX=3888 GN=RPL9 PE=2 SV=1	[more]
P49209	5.8e-90	85.05	60S ribosomal protein L9-1 OS=Arabidopsis thaliana OX=3702 GN=RPL9B PE=1 SV=3	[more]
Q9SZX9	3.8e-89	82.99	60S ribosomal protein L9-2 OS=Arabidopsis thaliana OX=3702 GN=RPL9D PE=2 SV=1	[more]
P49210	3.6e-84	81.05	60S ribosomal protein L9 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL9 PE=2 S...	[more]
Q90YW0	7.6e-58	58.76	60S ribosomal protein L9 OS=Ictalurus punctatus OX=7998 GN=rpl9 PE=2 SV=1	[more]

BLAST of Spg002388 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J3I2	4.0e-102	99.48	60S ribosomal protein L9 OS=Cucurbita maxima OX=3661 GN=LOC111483062 PE=3 SV=1	[more]
A0A6J1E4H2	4.0e-102	99.48	60S ribosomal protein L9-like OS=Cucurbita moschata OX=3662 GN=LOC111430709 PE=3...	[more]
A0A6J1G231	8.9e-102	98.97	60S ribosomal protein L9-like OS=Cucurbita moschata OX=3662 GN=LOC111449954 PE=3...	[more]
A0A6J1HZM6	4.4e-101	98.45	60S ribosomal protein L9-like OS=Cucurbita maxima OX=3661 GN=LOC111467681 PE=3 S...	[more]
A0A1S3CHZ9	9.9e-101	97.94	60S ribosomal protein L9-like OS=Cucumis melo OX=3656 GN=LOC103501171 PE=3 SV=1	[more]

BLAST of Spg002388 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G33120.1	4.1e-91	85.05	Ribosomal protein L6 family	[more]
AT1G33140.1	4.1e-91	85.05	Ribosomal protein L6 family	[more]
AT4G10450.1	2.7e-90	82.99	Ribosomal protein L6 family	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	GENE3D	3.90.930.12		coord: 1..90 e-value: 9.5E-30 score: 104.9
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	GENE3D	3.90.930.12		coord: 91..194 e-value: 1.5E-51 score: 174.7
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	SUPERFAMILY	56053	Ribosomal protein L6	coord: 1..90
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	SUPERFAMILY	56053	Ribosomal protein L6	coord: 91..187
IPR020040	Ribosomal protein L6, alpha-beta domain	PFAM	PF00347	Ribosomal_L6	coord: 12..90 e-value: 1.0E-11 score: 45.3 coord: 107..181 e-value: 3.5E-12 score: 46.8
IPR000702	Ribosomal protein L6	PIRSF	PIRSF002162	RPL6p_RPL6a_RPL9e_RPL9o	coord: 1..190 e-value: 1.8E-30 score: 103.7
IPR000702	Ribosomal protein L6	PANTHER	PTHR11655	60S/50S RIBOSOMAL PROTEIN L6/L9	coord: 1..194
None	No IPR available	PANTHER	PTHR11655:SF40	60S RIBOSOMAL PROTEIN L9-LIKE	coord: 1..194
IPR002359	Ribosomal protein L6, conserved site-2	PROSITE	PS00700	RIBOSOMAL_L6_2	coord: 166..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg002388.1	Spg002388.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome