Spg002382 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg002382
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	endonuclease MutS2
Location	scaffold6: 443933 .. 445076 (+)
RNA-Seq Expression	Spg002382
Synteny	Spg002382

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTTTATTGTACGCTACCATACATGTAATAGTATTAGCTACCGTTGTTTCCATATTGCAAGTTGCCTGCTAATGAGATTCTTATTATCTTACTGCTGCCTTTGATTCAAATTATAAAAATTTCCATGAGCTTGATGCTATAAATGCCCTTCTTAATACTATACTTAATTCAACATCATTTCTTTATGTACAGTTATATCAGTTAATGGACAGCCTAGTTAAGAATACAAAGAGTGGAACTTCCTTTTTGGTAAGAAGCATCAGATTGGACTTGATTTAACTCATTTGTTATTTTTTAAATAAATGTTTATCTATAATAATAAGAAACTGTTAAATCACCACTCAACCCTGCTTAGGCCGATGGGTTATGGTAAATTTAATATTTTATAATACTTGAACACTCCCTCCACTTGCGGGCTTGGTAATTTGTAGAAGGCCCAACAAGTGGAAATCAATATTAATTGGAGAAGAAATGTCTTTACTAGGGTTCGAACACTGGATATTTTGCTTTGATACTATGTTAAATCACCACTCAACCCAAAAGTTTAAGTTAATATGTTACTTAAATTTAATATTTTATCAATACTTCAACATAAACATATGTAGATTAGTGGACTAATTGTTTTTATTATGATACATCTACAATTTTGGCTTAGGAAGTGGGAAATATTGATGGAAGGTGGTGTATAAAATCAGAGGGCGATCAATTGCTGGATTTTAAGGGTCTGCTGTTGTCCAGGTTCCTCCATTTTTAACTTATAGCATTCGTGTTCTGTTGCATCAACTTATTAAATATGCTTTTTTGCCTTCTTTCCCATGCTAAGTTAAACGCTGGTAAGGAAAATGCCGTTGGTTATCAAATGTAGCCGTGCTTCAATGGTGTAGCCGAATATTATCTTTAATTAGAATGAATCAATGTTGTCCAGGTTTTCTTGATCTCACCCACATCATTCTTCAAGATTTCCACATCTCGTTCAACCGACAGCAAGCGTACGGTTGTTGCTCGTGGTGAGAGGACGGTGGTAGGCTCCGCCTCTTTTCCAACCGAAGATGAATCTCCTCCCACGTTGGTCGAGATTCTCTTGGTGGTCATAGTGGAAGCGCCCCAAAAATCGTGCGCTCTGATACCAAATATGGTGTAG

mRNA sequence

ATGTTTTTATTGTACGCTACCATACATGTAATAGTATTAGCTACCTTATATCAGTTAATGGACAGCCTAGTTAAGAATACAAAGAGTGGAACTTCCTTTTTGGAAGTGGGAAATATTGATGGAAGGTGGTGTATAAAATCAGAGGGCGATCAATTGCTGGATTTTAAGGGTCTGCTGTTGTCCAGCAAGCGTACGGTTGTTGCTCGTGGTGAGAGGACGGTGGTAGGCTCCGCCTCTTTTCCAACCGAAGATGAATCTCCTCCCACGTTGGTCGAGATTCTCTTGGTGGTCATAGTGGAAGCGCCCCAAAAATCGTGCGCTCTGATACCAAATATGGTGTAG

Coding sequence (CDS)

ATGTTTTTATTGTACGCTACCATACATGTAATAGTATTAGCTACCTTATATCAGTTAATGGACAGCCTAGTTAAGAATACAAAGAGTGGAACTTCCTTTTTGGAAGTGGGAAATATTGATGGAAGGTGGTGTATAAAATCAGAGGGCGATCAATTGCTGGATTTTAAGGGTCTGCTGTTGTCCAGCAAGCGTACGGTTGTTGCTCGTGGTGAGAGGACGGTGGTAGGCTCCGCCTCTTTTCCAACCGAAGATGAATCTCCTCCCACGTTGGTCGAGATTCTCTTGGTGGTCATAGTGGAAGCGCCCCAAAAATCGTGCGCTCTGATACCAAATATGGTGTAG

Protein sequence

MFLLYATIHVIVLATLYQLMDSLVKNTKSGTSFLEVGNIDGRWCIKSEGDQLLDFKGLLLSSKRTVVARGERTVVGSASFPTEDESPPTLVEILLVVIVEAPQKSCALIPNMV

Homology

[Close]

BLAST of Spg002382 vs. NCBI nr
Match: XP_022141293.1 (uncharacterized protein LOC111011726 isoform X3 [Momordica charantia])

HSP 1 Score: 92.8 bits (229), Expect = 2.0e-15
Identity = 49/71 (69.01%), Postives = 55/71 (77.46%), Query Frame = 0


Query: 16  LYQLMDSLVKNTKSGTSFLEVGNIDGRWCIKSEGDQLLDFKGLLLSSKRTVVARGERTVV 75
           LYQLMDSLV+N KSGTSFLEVGN+DGRWCIKSEG+QL+DFKGLLLSS     A G  T++
Sbjct: 233 LYQLMDSLVRNAKSGTSFLEVGNVDGRWCIKSEGNQLMDFKGLLLSS----AAGGIGTIL 292

Query: 76  GSAS-FPTEDE 86
              S  P  DE
Sbjct: 293 EPLSAVPLNDE 299

[Close]

BLAST of Spg002382 vs. NCBI nr
Match: XP_022141292.1 (uncharacterized protein LOC111011726 isoform X2 [Momordica charantia])

HSP 1 Score: 92.8 bits (229), Expect = 2.0e-15
Identity = 49/71 (69.01%), Postives = 55/71 (77.46%), Query Frame = 0


Query: 16  LYQLMDSLVKNTKSGTSFLEVGNIDGRWCIKSEGDQLLDFKGLLLSSKRTVVARGERTVV 75
           LYQLMDSLV+N KSGTSFLEVGN+DGRWCIKSEG+QL+DFKGLLLSS     A G  T++
Sbjct: 238 LYQLMDSLVRNAKSGTSFLEVGNVDGRWCIKSEGNQLMDFKGLLLSS----AAGGIGTIL 297

Query: 76  GSAS-FPTEDE 86
              S  P  DE
Sbjct: 298 EPLSAVPLNDE 304

[Close]

BLAST of Spg002382 vs. NCBI nr
Match: XP_022141291.1 (uncharacterized protein LOC111011726 isoform X1 [Momordica charantia])

HSP 1 Score: 92.8 bits (229), Expect = 2.0e-15
Identity = 49/71 (69.01%), Postives = 55/71 (77.46%), Query Frame = 0


Query: 16  LYQLMDSLVKNTKSGTSFLEVGNIDGRWCIKSEGDQLLDFKGLLLSSKRTVVARGERTVV 75
           LYQLMDSLV+N KSGTSFLEVGN+DGRWCIKSEG+QL+DFKGLLLSS     A G  T++
Sbjct: 238 LYQLMDSLVRNAKSGTSFLEVGNVDGRWCIKSEGNQLMDFKGLLLSS----AAGGIGTIL 297

Query: 76  GSAS-FPTEDE 86
              S  P  DE
Sbjct: 298 EPLSAVPLNDE 304

[Close]

BLAST of Spg002382 vs. NCBI nr
Match: XP_022141295.1 (uncharacterized protein LOC111011726 isoform X5 [Momordica charantia])

HSP 1 Score: 92.8 bits (229), Expect = 2.0e-15
Identity = 49/71 (69.01%), Postives = 55/71 (77.46%), Query Frame = 0


Query: 16  LYQLMDSLVKNTKSGTSFLEVGNIDGRWCIKSEGDQLLDFKGLLLSSKRTVVARGERTVV 75
           LYQLMDSLV+N KSGTSFLEVGN+DGRWCIKSEG+QL+DFKGLLLSS     A G  T++
Sbjct: 89  LYQLMDSLVRNAKSGTSFLEVGNVDGRWCIKSEGNQLMDFKGLLLSS----AAGGIGTIL 148

Query: 76  GSAS-FPTEDE 86
              S  P  DE
Sbjct: 149 EPLSAVPLNDE 155

[Close]

BLAST of Spg002382 vs. NCBI nr
Match: XP_022141294.1 (uncharacterized protein LOC111011726 isoform X4 [Momordica charantia])

HSP 1 Score: 92.8 bits (229), Expect = 2.0e-15
Identity = 49/71 (69.01%), Postives = 55/71 (77.46%), Query Frame = 0


Query: 16  LYQLMDSLVKNTKSGTSFLEVGNIDGRWCIKSEGDQLLDFKGLLLSSKRTVVARGERTVV 75
           LYQLMDSLV+N KSGTSFLEVGN+DGRWCIKSEG+QL+DFKGLLLSS     A G  T++
Sbjct: 195 LYQLMDSLVRNAKSGTSFLEVGNVDGRWCIKSEGNQLMDFKGLLLSS----AAGGIGTIL 254

Query: 76  GSAS-FPTEDE 86
              S  P  DE
Sbjct: 255 EPLSAVPLNDE 261

[Close]

BLAST of Spg002382 vs. ExPASy TrEMBL
Match: A0A6J1CK29 (uncharacterized protein LOC111011726 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111011726 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 9.7e-16
Identity = 49/71 (69.01%), Postives = 55/71 (77.46%), Query Frame = 0


Query: 16  LYQLMDSLVKNTKSGTSFLEVGNIDGRWCIKSEGDQLLDFKGLLLSSKRTVVARGERTVV 75
           LYQLMDSLV+N KSGTSFLEVGN+DGRWCIKSEG+QL+DFKGLLLSS     A G  T++
Sbjct: 233 LYQLMDSLVRNAKSGTSFLEVGNVDGRWCIKSEGNQLMDFKGLLLSS----AAGGIGTIL 292

Query: 76  GSAS-FPTEDE 86
              S  P  DE
Sbjct: 293 EPLSAVPLNDE 299

[Close]

BLAST of Spg002382 vs. ExPASy TrEMBL
Match: A0A6J1CJG8 (uncharacterized protein LOC111011726 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011726 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 9.7e-16
Identity = 49/71 (69.01%), Postives = 55/71 (77.46%), Query Frame = 0


Query: 16  LYQLMDSLVKNTKSGTSFLEVGNIDGRWCIKSEGDQLLDFKGLLLSSKRTVVARGERTVV 75
           LYQLMDSLV+N KSGTSFLEVGN+DGRWCIKSEG+QL+DFKGLLLSS     A G  T++
Sbjct: 238 LYQLMDSLVRNAKSGTSFLEVGNVDGRWCIKSEGNQLMDFKGLLLSS----AAGGIGTIL 297

Query: 76  GSAS-FPTEDE 86
              S  P  DE
Sbjct: 298 EPLSAVPLNDE 304

[Close]

BLAST of Spg002382 vs. ExPASy TrEMBL
Match: A0A6J1CHN4 (uncharacterized protein LOC111011726 isoform X5 OS=Momordica charantia OX=3673 GN=LOC111011726 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 9.7e-16
Identity = 49/71 (69.01%), Postives = 55/71 (77.46%), Query Frame = 0


Query: 16  LYQLMDSLVKNTKSGTSFLEVGNIDGRWCIKSEGDQLLDFKGLLLSSKRTVVARGERTVV 75
           LYQLMDSLV+N KSGTSFLEVGN+DGRWCIKSEG+QL+DFKGLLLSS     A G  T++
Sbjct: 89  LYQLMDSLVRNAKSGTSFLEVGNVDGRWCIKSEGNQLMDFKGLLLSS----AAGGIGTIL 148

Query: 76  GSAS-FPTEDE 86
              S  P  DE
Sbjct: 149 EPLSAVPLNDE 155

[Close]

BLAST of Spg002382 vs. ExPASy TrEMBL
Match: A0A6J1CI69 (uncharacterized protein LOC111011726 isoform X4 OS=Momordica charantia OX=3673 GN=LOC111011726 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 9.7e-16
Identity = 49/71 (69.01%), Postives = 55/71 (77.46%), Query Frame = 0


Query: 16  LYQLMDSLVKNTKSGTSFLEVGNIDGRWCIKSEGDQLLDFKGLLLSSKRTVVARGERTVV 75
           LYQLMDSLV+N KSGTSFLEVGN+DGRWCIKSEG+QL+DFKGLLLSS     A G  T++
Sbjct: 195 LYQLMDSLVRNAKSGTSFLEVGNVDGRWCIKSEGNQLMDFKGLLLSS----AAGGIGTIL 254

Query: 76  GSAS-FPTEDE 86
              S  P  DE
Sbjct: 255 EPLSAVPLNDE 261

[Close]

BLAST of Spg002382 vs. ExPASy TrEMBL
Match: A0A6J1CIQ4 (uncharacterized protein LOC111011726 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011726 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 9.7e-16
Identity = 49/71 (69.01%), Postives = 55/71 (77.46%), Query Frame = 0


Query: 16  LYQLMDSLVKNTKSGTSFLEVGNIDGRWCIKSEGDQLLDFKGLLLSSKRTVVARGERTVV 75
           LYQLMDSLV+N KSGTSFLEVGN+DGRWCIKSEG+QL+DFKGLLLSS     A G  T++
Sbjct: 238 LYQLMDSLVRNAKSGTSFLEVGNVDGRWCIKSEGNQLMDFKGLLLSS----AAGGIGTIL 297

Query: 76  GSAS-FPTEDE 86
              S  P  DE
Sbjct: 298 EPLSAVPLNDE 304

[Close]

BLAST of Spg002382 vs. TAIR 10
Match: AT5G54090.1 (DNA mismatch repair protein MutS, type 2 )

HSP 1 Score: 48.5 bits (114), Expect = 4.1e-06
Identity = 21/47 (44.68%), Postives = 30/47 (63.83%), Query Frame = 0


Query: 16  LYQLMDSLVKNTKSGTSFLEVGNIDGRWCIKSEGDQLLDFKGLLLSS 63
           L QL+D+++++ K   S +    IDGRWCI+   +QL    GLLLSS
Sbjct: 223 LQQLLDAIIRSQKDDESVMLAAEIDGRWCIQMSSNQLTSVNGLLLSS 269

The following BLAST results are available for this feature:

BLAST of Spg002382 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141293.1	2.0e-15	69.01	uncharacterized protein LOC111011726 isoform X3 [Momordica charantia]	[more]
XP_022141292.1	2.0e-15	69.01	uncharacterized protein LOC111011726 isoform X2 [Momordica charantia]	[more]
XP_022141291.1	2.0e-15	69.01	uncharacterized protein LOC111011726 isoform X1 [Momordica charantia]	[more]
XP_022141295.1	2.0e-15	69.01	uncharacterized protein LOC111011726 isoform X5 [Momordica charantia]	[more]
XP_022141294.1	2.0e-15	69.01	uncharacterized protein LOC111011726 isoform X4 [Momordica charantia]	[more]

BLAST of Spg002382 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg002382 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CK29	9.7e-16	69.01	uncharacterized protein LOC111011726 isoform X3 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CJG8	9.7e-16	69.01	uncharacterized protein LOC111011726 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CHN4	9.7e-16	69.01	uncharacterized protein LOC111011726 isoform X5 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CI69	9.7e-16	69.01	uncharacterized protein LOC111011726 isoform X4 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CIQ4	9.7e-16	69.01	uncharacterized protein LOC111011726 isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Spg002382 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54090.1	4.1e-06	44.68	DNA mismatch repair protein MutS, type 2	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg002382.1	Spg002382.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0000166	nucleotide binding