Spg002354 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg002354
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ribosome-binding factor PSRP1
Location	scaffold6: 276859 .. 284005 (-)
RNA-Seq Expression	Spg002354
Synteny	Spg002354

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCTTTCACCTCTTCCATACAAACCAATCTCTTTTCCTGCCATTCCTTAGCTGCTGCTGCTTCTTCTTCTTCTTCTACTTTACCCGCTTCCTTCTCTCTTCACTTCTCTGCTCTCAAAATTCACGCTCTTTCTTCCCATAGTTCTGCTTTCTTCAACTCCTGCAAGTGCTTCCGAACCATTGACATTGCACCTCGCAACCGTCATGCCACAAACTCTTTCACTATTCGGATGTCCTGGGACGGCCCCCTCTCCTCTGTCAAATTAATTGTTCAAGGCAAGAATTTGGAGGTATTTTAACTTCCTCTTCGCTCTTGTTTCTCTTACAATGCATTCTTCTGTTCAAATTAAATTCTACTGCGCTGAATTGTTCGATCCTTAGCTGTGTTCAAGGCTTCTTTACTAATTGATGTTTCGACTAATCGTTTTTTAAATGTTAAGTTCCATAATCGCCTCACGCTCCTTCTTTTAGTTATTAGGAGTAAGATGTTGAGAGAAATCAAAGTGGGACAGTAACACATTTGAAGGACGCACTTGGATTTATTTAGCCTCACGAACATGCTGAAAAAGTTTAACTACCTACATCTACCAAAGCCTAAATGTGATTCAGATTAAAACTGCACGTTGAAGCAGATAAAGAAACGACCTACTAACTCACTGCCCTTAATTATTGGATTTGGAATACATTGCATGATGACAAAACTATCCACCAATTAGAATCCCTAGTCATTCCGCCCTTCAACTGAATACTTCAAGCACTCAGTATATAGATCTGTTCGAGAAAACATCCGGCTTCAAAGGCTTAGTCATCACGCCGACCAACTGTTCTTGTGCACTAAAATATATCAGCTTCCCTTTCCTTAGTATCAGATTCTTCGGAAGTTTGATTCAGGAGTTAAGAGTTACTATCATAAAAAACAACAGTCACTTGGGTGCTCCACAAAACCTCTTGATTCAATTCAGTGTTTCAAAAGGTTCAAGGTGCACTAAGGCACAATGGTCTTTTTTTTTTCAAGGCGCACTATATAGAAAAAAAACTTAAAAAAATATATACATGTATATAAAACACTTTCATGACAAGTAATGAAGTTTTTAACCAAGAAAAATAGATAAAAGATAAACAAGGTTTAAATAAGGATTTTTTTTAAAATTATTTAGAATACTAAATGGTGAGTTTAGTATTTAGGTTTACAAAATTTAAAAAAATAAGAAGGCGCCTCTCGGGCTTCGAGGGAAGGCGCGCACCTTCCTCACTGTCTCGCTTTGAAGAAGCGACAAGCGAGGCGCTAAGGGGTGCCTTGTGCCCAGACACGCCTTTTAAAACACTGATTCAACTCACCATATAAAATTTTAAATTTACGTCTACCTGGTTGATAGCCCATCCTCTATGAGCTACAACTGCTATGACCAGACTAATTTCATGCTTCTAGTATAATCTTCCTATGCCACAGAGCATGTCCCTTTACTCGAAGCCTATCCTTGTATTTGCCGACTTCTCCATTTCCATTAAATGTAGTTTTATAAACCCCCCTCACTCTAATTTTATTTTCTCCAGGTAAATCTGTTAATTCGTATATGTCTTGTCATTTCTTCTTATGGCTTCCACATCAACATTCGTGTCCCTCCTCCATTTTTTTACTCTACACAGCTTCTTTCAAGTGAACGGGATCAACAAGAGTAAACATGGCATAATGCATCCACTATCTTTTTCGAAGACTTCCCCTATTACATAGTTTCTCATCCAAATTGCTAGTCTTCTATATCTTCGTTTATTGCAGCTAGGAGATGGTTCTTTGGTCAAGGAATCAGGACACGTTTATTTTCTTCTGAATCAGCATCTAAACGAAATTCATCCTCATCGAACACAACCATTTCCCCTTCATGATTATGCAATTACAGATCACACACAATGGCTACTTCGCAATTCCCAATTTCAATCGTTATCTTTTTCAGATGCAGCACATATCTGCTTATGGAAATCCTTTGTAAAATTGGATCACAAAGTCTATAAGCCCTTTGGCTTTTCACTAAATCCAAGCAATTCAACCCAAGCTTTTATCATCCACCTTAGTTCTTTTACTGTCTGGCACATGAACATGAGACACACATCCAAAAGTATTCAAGTACTCAACCAAAGGCTTAACTCCACTCTGAGTTGGGATTCTTATTTTCACTGTCAAGGTTGAGGTTTCCATTGTGAACGACCTAACTTGCTGGTTGAGGCCAGAAATTTTTGGGTGTTCTTTAAAGCATACTAATATTCATAATGGTTACATTTTTAAAGATTAGGTTCTTTATCTAACAAGTTATCCACAAAAGAGTTAATATGATCAATAAGCTCTCGAGGAAGATGACTTCGTTGGTAGGTCCGTTTTGTTCCATTTTATGTTGGAAGGAGGAGGAAGATCTAGACCATATTTTGTGGGATTACGAGTTTGCTAGTTCGGTGTGGGGTTTGTTCCACAACGCTTTCGGGTTACTGGCTAGATGCTTCAAAGACTACAAGGAGATGATCCAAGAGTTCCTCCTCCATCTCCCATTTCGCAATAAGGGAAGGTTTTTATGGCTAGCTGAGGTGTGCGCTGTCTTATGAGGCCTTTGGGGTGAGAGAAATAATAGGGTGTTCCGAGGCTTGAGAGAGTTCCTTCCGACGTTTGGGCCCTTGCTATGTTTCTCTCTAGGCCTCGGTTTCTAAGTATTTTTGTAATTATTCTCTAGGCACTATTATTTTTTATTGGCGGCCTTTCCTATAATGGGGTCTTTTTGTGGGCTGGGTTTTTTGGTAAGCCCTTGTATTTCTTCATTTTTTTTCTCAGTGAAAGTTGGTTTTATTATAAAATATATATATATGTATATATGGGTGGTTATATTGTTTTGTTATGCGATTGCATTTTGGTATCATGTTTATGCAACCATCAGTTGATGTCTACTGTTTACGTCCCAGAATTGGTGAACTTTTGTGGTGTTAACTCTCCTCAATCAGAACATTGAACCTTTCCCTACTAATCAAAACAGGCTTGATATGTCCACATGCTAGTGTACTAAAAAACGAATACAAAATCTAACCCACCTTAGAGTGAGACATAGACAGTATCCATACGGATCTGAAACTCCGATTAGCCGAAACCAAACTAACGAAATGGCAGGAAAGCCAAGTCGCTGGAGTTTCAGGCAACAGGAAGTAGGAGATCCAAAGGCCGAGAACAAATGCCTCAAGAACAAGGTCAAGTGGGAAATGGAGAGAATTCTAGAAGGAAAACCCTAATGGAATTTCCCCGAAACTCATGCTAGAGTGTACTCATAGAAGAAAATGTGAAACTCTCTGGGTTCTCCTTTTACGGCATGGATTCCCTTTCTTGGTTACCAAGTAAGCATTGCATAAATTTGAAGGAGACATAAGCTAAGCTCTAGCTTTCTATGTTGAAGATCCATCAAATGCTTAAAGCTCAGTTATCCATATTATCAATGCTATAGCCTAAACCTGCACAATTTCTTCACAATATATACTATTGGTTGAGGTATGACTTTGAGCATGTACATTCCTTTCAAGAACATTTTCATCACCGTTATTAGACCTCTGTCAGGATGGAAACGCCTTGCACTTTCCATTTTGAATTAAAATATCAAGCCCTCTATCCAGCAATAACCTGATCTTCGATAAATTATTATTCAGTTCTGACTTGCAACCTTGCATTACCCTTTCCTATTTTACCCATGTTTGAATTGTTGCCCAGGGCCCCAGCTTTAGGAAGTCTGAATAATTTTCATCTAGAACTAAGAATTATTCCATCTTCCTATATGTATAATTGCTACATCTTAAGTCAAGAAACTATCTTCTTTGTTGAATATATCCATAGCAACATCTCTTCTTGAGCCTTTGCGTCTGTGTTTTCAAAAAAGCAAGACTCATTGATGTGCAATAATCTTAACAAGGGCTTTATTTAAGTGACTTTAAAGAAATAAGCATCCAACTAATTTTCTTCCTAGTATTAAGAGAAAGAAATGAGAAAGAATGCTACTCTTTGGAACTCGTACATCATTCATGCCCAAGCAAGCAACTCTGCAACTCATCAATGTTTAAAGCATCTAGGAAAGGCTTTTCCAAAGAATTACAGAAACTTTCTTGGACTCTTCATAGAACACACAACATAATTGAAATTTGGAATGATGGATCTCAGAAAGTTTTCAACCACTACAAGATCTCCTTTATTTTGTTCACACCATTTTCCTTTATCTTGTTAGCTATATTTAGAGTCTAAACAAAATATTCTTTCAAAGATTCTTCTATATGAAGAATTTCAAACTCCTCTCAAAGTGCTTGCAAGCATGCATGTTTTATTCGTGTAATTCTTTGATATTTCTGCTGCTTAAAACTGCATATACTGTTGCTGTAACCTTACCAAGAATTGTATCCTAAATTGAACAATCTAACGCTTGAGATAGGTAGTTCTTGGCTTTCAAATCTTTGAGCTTCTAACTTTCAATGTTCTTCCTCTGCGCATATGTGAGAATATCACCTTCTGCTGTTGTAATTATCCCACTTTCCACTGAGCCCCTGTACACCTCTGAATGTAAGAAGTTTTCCATGACGATCACAGTGCCCATCCAATTTTGGAACAACTGCCTCTAAATTTAACCAGGCCCTGATCCAGATGATGGAGCTTTGACACCAAATATTAGGTATAAGTTCTTCACAGAAATAAGGAGAAATACCCTCATATAAACATGCTGAAAAAGATAACCATCTAACAAAGTTCAATAAGGTGGTCATCGTACTTGAGCAACCTACCAAATGCAGATAAAGAATTAAACTACCAACACTTGTAAACAAACTACTTTAATGATAGAAACTCTATTGCTGAGGATGACTAGACCACCCACTAACTAAAAATCCTAACACCTTTCTAGAAAGGGCCGGTTGCAAATATAGCAAACCGGCCCAAAATATTTGCATGCGGCCCGCAAAAAATTTTGCAAAAATGGCAAAATTTTAAGTTTTGAAATGTGTATTTACTAAAATGCCCTTTCTATCTGATAGAAAGTCTTTCTATCACTGATAGAATCTATCAGTGATAGAAATAGATTCTATCTGATAGAAAGACTTTCTATCTGATAGAAAGTCTTTCTATCAGTGATAGAAGCTTTCTATCACTCATAGAGATAGATTCTATCAGATAGAAAGATTTTCTATCAGTGTTTGGTAGGTGTTTGCTTTCTATCATTTCTATCACTTCTATCCTATAGGCTGATATTGCCACCCATTACAAATATCCTTCTAGAAATGGTCAGAATTTCAGCTACCCAATTTATCATATCTCCATGTTTCAAGTGTCATCTAACCTTGAATGGATTTATTTTTCATTATGCACAAAACTAGTTGACTGAAGCGGTTAAGAAGCATGTGGAAGAGAAGGTTGGCAAGGCCGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTGGATGTCAGGCTATCAGTTAGAGGTGGAGAGTTTGGGAAGGGTCCAAGGATTAGAAGATGCGAGGTATTGTATTGCTTCTTTATTTTAAAAATATCCACAAGAATTGAATCCTCATTTTGTTTAAAGACATTTGTGTTTGTATAGGTTACTTTATTCACAAAGAAGCATGGAGTTGTGCGGGCAGAGGAAGATGCTGAGACCGTCTATGCAAGCATTGATTTGGTATCTTCCATCATACAAAGGAAGTTGAGAAAAATTAAAGAGAAAGATTCAGACCATGGCCGACATATGAAAGGATTTGACAGATTGAAAGTAAGAGAACCTGCACCAATAGTAGTTGAAGATGAGGAAGAAGAAGTTTCTCAAGAAGATGGTGGAGAAGTTATTGATGAGGTAATTCCTTGAACCTTTGGTTCAAAGTTCTTAGTTCATTTTGCTGCATATATTGATTTATTTAAGGTTATAATAGCTTAAAGAAACTCATGCATTCCAGGCCTATTAATTATTTTCTATATGTCAAAGCTAATTAAGAATGTCAGAATTACTACAGCTATTCTCTCTGAGTTATTGAAGTTGACAATGTCAGAGTTCCTTCCAGGGATTAGTCTTGGGGAAATACTAAATGCAATGCTCAGAACTAATATCTGTCGAACCACATGCAATAAGTTACTCATTGTGTAGGAGGGAAGAATAGAAAGCAGCGCATTCTCAAACTTGATTTCCCCCTCTAAACTTATCATATTTTCATTTGTATTATAGGACTAATAAGTCAGAATTTTTTTCACAACATGATATTTTAGATGAACGTGAAAAAATCGGAAGTTTGATCCTATAACTGAAAGATAGGGGCCTCCATAGTTTGTAGTAGCCTGTTGTTATTTCTTGCTGAGCTAACGTTGTGTTCAACTATTATAGATTAGCTTCTATCTGTTGGATAGGCCTGTTACATTAGATTTCCTTTCTACTTAATTCTTTCAACCTGCTTAGAGTTAACAAGTTGGTTCTTCATTGCAGATGAGACATGCCTCCGAAGCTTTTACTGATCCTTTGCTCTTAATGCTTCTTTTGTGGTCAATTCAAATGTATTTGATTGTTATAGATTTTGATTCACTTGCTTTTTTTTTTTTGTTGACATTCAATTCAATTTTGTTGGAAGAAGCACTTTCATGTCTTGTTTATCTTTGTCCTTTTTAGATGACTAGAACATCTATTATGTATTGGAAGTTTATGAACATCTATTATGTAGTAAATATTTCTTTACTCGATATGAACCTTTATTAGTTTAAATATTGATTTTTCTTTTTCATGTCAGCATTTTTTTCTTCAGCATCTCATAACTCATTTTTAACTTTTCATCAGATTGTACGGACAAAATACTTTGATATGCCACCTTTGACCATTGAAGAAGCAATCGAACAACTCAAAAATATTGACCATGATTTCTATGGTTTCCGCAATGAAGAAACTGGTATGTTGATTAATATGATAATGTTGTTTTGTTGGGATTATCTGTGCTATTTATATCTTGAGGCTCATTGTCTTCTTTTTGGCCCAGGTGAGATTAACATCTTATATAAAAGAAAGGAGGGAGGATATGGACTTATCATCCCAAAAGAAAATGGCGGAGCTGAGAAATTAGAACCTGTGACAGTTGAACCTTCCAGAGAACCTTCCTTGGCGGAATGA

mRNA sequence

ATGGCCGCTTTCACCTCTTCCATACAAACCAATCTCTTTTCCTGCCATTCCTTAGCTGCTGCTGCTTCTTCTTCTTCTTCTACTTTACCCGCTTCCTTCTCTCTTCACTTCTCTGCTCTCAAAATTCACGCTCTTTCTTCCCATAGTTCTGCTTTCTTCAACTCCTGCAAGTGCTTCCGAACCATTGACATTGCACCTCGCAACCGTCATGCCACAAACTCTTTCACTATTCGGATGTCCTGGGACGGCCCCCTCTCCTCTGTCAAATTAATTGTTCAAGGCAAGAATTTGGAGGAGGAGGAAGATCTAGACCATATTTTGTGGGATTACGAGTTTGCTAGTTCGGTGTGGGGTTTGTTCCACAACGCTTTCGGGTTACTGGCTAGATGCTTCAAAGACTACAAGGAGATGATCCAAGAGTTCCTCCTCCATCTCCCATTTCGCAATAAGGGAAGGTTTTTATGGCTAGCTGAGTTGACTGAAGCGGTTAAGAAGCATGTGGAAGAGAAGGTTGGCAAGGCCGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTGGATGTCAGGCTATCAGTTAGAGGTGGAGAGTTTGGGAAGGGTCCAAGGATTAGAAGATGCGAGGTTACTTTATTCACAAAGAAGCATGGAGTTGTGCGGGCAGAGGAAGATGCTGAGACCGTCTATGCAAGCATTGATTTGGTATCTTCCATCATACAAAGGAAGTTGAGAAAAATTAAAGAGAAAGATTCAGACCATGGCCGACATATGAAAGGATTTGACAGATTGAAAGTAAGAGAACCTGCACCAATAGTAGTTGAAGATGAGGAAGAAGAAGTTTCTCAAGAAGATGGTGGAGAAGTTATTGATGAGATGAGACATGCCTCCGAAGCTTTTACTGATCCTTTGCTCTTAATGCTTCTTTTGTGGTCAATTCAAATGTATTTGATTATTGTACGGACAAAATACTTTGATATGCCACCTTTGACCATTGAAGAAGCAATCGAACAACTCAAAAATATTGACCATGATTTCTATGGTTTCCGCAATGAAGAAACTGGTGAGATTAACATCTTATATAAAAGAAAGGAGGGAGGATATGGACTTATCATCCCAAAAGAAAATGGCGGAGCTGAGAAATTAGAACCTGTGACAGTTGAACCTTCCAGAGAACCTTCCTTGGCGGAATGA

Coding sequence (CDS)

ATGGCCGCTTTCACCTCTTCCATACAAACCAATCTCTTTTCCTGCCATTCCTTAGCTGCTGCTGCTTCTTCTTCTTCTTCTACTTTACCCGCTTCCTTCTCTCTTCACTTCTCTGCTCTCAAAATTCACGCTCTTTCTTCCCATAGTTCTGCTTTCTTCAACTCCTGCAAGTGCTTCCGAACCATTGACATTGCACCTCGCAACCGTCATGCCACAAACTCTTTCACTATTCGGATGTCCTGGGACGGCCCCCTCTCCTCTGTCAAATTAATTGTTCAAGGCAAGAATTTGGAGGAGGAGGAAGATCTAGACCATATTTTGTGGGATTACGAGTTTGCTAGTTCGGTGTGGGGTTTGTTCCACAACGCTTTCGGGTTACTGGCTAGATGCTTCAAAGACTACAAGGAGATGATCCAAGAGTTCCTCCTCCATCTCCCATTTCGCAATAAGGGAAGGTTTTTATGGCTAGCTGAGTTGACTGAAGCGGTTAAGAAGCATGTGGAAGAGAAGGTTGGCAAGGCCGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTGGATGTCAGGCTATCAGTTAGAGGTGGAGAGTTTGGGAAGGGTCCAAGGATTAGAAGATGCGAGGTTACTTTATTCACAAAGAAGCATGGAGTTGTGCGGGCAGAGGAAGATGCTGAGACCGTCTATGCAAGCATTGATTTGGTATCTTCCATCATACAAAGGAAGTTGAGAAAAATTAAAGAGAAAGATTCAGACCATGGCCGACATATGAAAGGATTTGACAGATTGAAAGTAAGAGAACCTGCACCAATAGTAGTTGAAGATGAGGAAGAAGAAGTTTCTCAAGAAGATGGTGGAGAAGTTATTGATGAGATGAGACATGCCTCCGAAGCTTTTACTGATCCTTTGCTCTTAATGCTTCTTTTGTGGTCAATTCAAATGTATTTGATTATTGTACGGACAAAATACTTTGATATGCCACCTTTGACCATTGAAGAAGCAATCGAACAACTCAAAAATATTGACCATGATTTCTATGGTTTCCGCAATGAAGAAACTGGTGAGATTAACATCTTATATAAAAGAAAGGAGGGAGGATATGGACTTATCATCCCAAAAGAAAATGGCGGAGCTGAGAAATTAGAACCTGTGACAGTTGAACCTTCCAGAGAACCTTCCTTGGCGGAATGA

Protein sequence

MAAFTSSIQTNLFSCHSLAAAASSSSSTLPASFSLHFSALKIHALSSHSSAFFNSCKCFRTIDIAPRNRHATNSFTIRMSWDGPLSSVKLIVQGKNLEEEEDLDHILWDYEFASSVWGLFHNAFGLLARCFKDYKEMIQEFLLHLPFRNKGRFLWLAELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVEDEEEEVSQEDGGEVIDEMRHASEAFTDPLLLMLLLWSIQMYLIIVRTKYFDMPPLTIEEAIEQLKNIDHDFYGFRNEETGEINILYKRKEGGYGLIIPKENGGAEKLEPVTVEPSREPSLAE

Homology

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BLAST of Spg002354 vs. NCBI nr
Match: XP_004147328.1 (ribosome-binding factor PSRP1, chloroplastic [Cucumis sativus] >KAE8651998.1 hypothetical protein Csa_016934 [Cucumis sativus])

HSP 1 Score: 479.2 bits (1232), Expect = 3.5e-131
Identity = 273/396 (68.94%), Postives = 288/396 (72.73%), Query Frame = 0


Query: 1   MAAFTSSIQTNLFSCHSLAAAASSSS--STLPASFSLHFSALKIHALSSHSSAFFNSCKC 60
           MA  TSS+Q NL S HSL+    SSS  S  PASFSLHFSALK+HALSS++SAFFNSCK 
Sbjct: 1   MATLTSSMQANLLSDHSLSPPFHSSSTVSYFPASFSLHFSALKVHALSSNASAFFNSCKN 60

Query: 61  FRTIDIAPRNRHATNSFTIRMSWDGPLSSVKLIVQGKNLEEEEDLDHILWDYEFASSVWG 120
           F TI+ A RNRHA+NSF+IRM+WDGPLSSVKLIVQGKNL                     
Sbjct: 61  FGTIETASRNRHASNSFSIRMTWDGPLSSVKLIVQGKNL--------------------- 120

Query: 121 LFHNAFGLLARCFKDYKEMIQEFLLHLPFRNKGRFLWLAELTEAVKKHVEEKVGKAVQKH 180
                                                  ELTEAVKKHVEEKVGKAVQKH
Sbjct: 121 ---------------------------------------ELTEAVKKHVEEKVGKAVQKH 180

Query: 181 SHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQ 240
           SHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV+ASIDLVSSIIQ
Sbjct: 181 SHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVFASIDLVSSIIQ 240

Query: 241 RKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVEDEEEEVSQEDGGEVIDEMRHASEAFT 300
           RKLRKIKEKDSD GRH+KGFDR KVREPAPIVVEDEEEEV QEDGGEVIDE         
Sbjct: 241 RKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDE--------- 300

Query: 301 DPLLLMLLLWSIQMYLIIVRTKYFDMPPLTIEEAIEQLKNIDHDFYGFRNEETGEINILY 360
                            IVRTKYFDMPPLT+EEAIEQLKNIDHDFYGFRNEETGEINILY
Sbjct: 301 -----------------IVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILY 310

Query: 361 KRKEGGYGLIIPKENGGAEKLEPVTVEPSREPSLAE 395
           KRK+GGYGLIIPKENG AEKLEPVT+E +REPSLAE
Sbjct: 361 KRKDGGYGLIIPKENGTAEKLEPVTIEATREPSLAE 310

[Close]

BLAST of Spg002354 vs. NCBI nr
Match: XP_023551717.1 (ribosome-binding factor PSRP1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 475.3 bits (1222), Expect = 5.0e-130
Identity = 274/401 (68.33%), Postives = 289/401 (72.07%), Query Frame = 0


Query: 1   MAAFTSSIQTNLFSCHSLAAAASSSS--STLPASFSL----HFSALKIHALSSHSSAFFN 60
           MAA TSS+QTNL S HSL  ++SSS+  ST P SFSL    + + LKIHALSSH+SAFFN
Sbjct: 1   MAALTSSMQTNLLSAHSLTPSSSSSTTVSTFPTSFSLPTSTNSAVLKIHALSSHASAFFN 60

Query: 61  SCK-CFRTIDIAPRNRHATNSFTIRMSWDGPLSSVKLIVQGKNLEEEEDLDHILWDYEFA 120
           SC  CFRTI IAPR RHAT SF+IRMSWDGPLSSVKLIVQGKNL                
Sbjct: 61  SCNHCFRTIVIAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNL---------------- 120

Query: 121 SSVWGLFHNAFGLLARCFKDYKEMIQEFLLHLPFRNKGRFLWLAELTEAVKKHVEEKVGK 180
                                                       ELTEAVKKHVEEKVGK
Sbjct: 121 --------------------------------------------ELTEAVKKHVEEKVGK 180

Query: 181 AVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLV 240
           AVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLV
Sbjct: 181 AVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLV 240

Query: 241 SSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVEDEEEEVSQEDGGEVIDEMRHA 300
           SSI+QRKLRKIKEKDSDHGRHMKGFDR K+REPAPIVVEDEEEEVSQEDGGE IDE    
Sbjct: 241 SSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDE---- 300

Query: 301 SEAFTDPLLLMLLLWSIQMYLIIVRTKYFDMPPLTIEEAIEQLKNIDHDFYGFRNEETGE 360
                                 IVRTKYFDMPPLT+EEAIEQLKNIDHDFYGFRNEETGE
Sbjct: 301 ----------------------IVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGE 315

Query: 361 INILYKRKEGGYGLIIPKENGGAEKLEPVTVEPSREPSLAE 395
           INILYKRK+GGYGLIIPKE+G AEK+E VTVE +RE SLAE
Sbjct: 361 INILYKRKDGGYGLIIPKEDGNAEKIETVTVEVAREASLAE 315

[Close]

BLAST of Spg002354 vs. NCBI nr
Match: XP_022141073.1 (ribosome-binding factor PSRP1, chloroplastic [Momordica charantia])

HSP 1 Score: 475.3 bits (1222), Expect = 5.0e-130
Identity = 276/400 (69.00%), Postives = 285/400 (71.25%), Query Frame = 0


Query: 1   MAAFTSSIQTNLFSCHSLAAAASSSSSTLPASFSL----HFSALKIHALSSHSSAFFNSC 60
           MA  TSS+ TNL S    A ++SS+ ST PASFSL    + SALKIH LSSH+S FFNSC
Sbjct: 1   MATLTSSMHTNLLS----APSSSSTFSTFPASFSLLTSTNSSALKIHPLSSHTSPFFNSC 60

Query: 61  KCFRTIDIAPRNRHATNSFTIRMSWDGPLSSVKLIVQGKNLEEEEDLDHILWDYEFASSV 120
            CF TI IAPRNRHA NSFTIRMSWDGPLSSVKLIVQGKNL                   
Sbjct: 61  NCFTTIQIAPRNRHAANSFTIRMSWDGPLSSVKLIVQGKNL------------------- 120

Query: 121 WGLFHNAFGLLARCFKDYKEMIQEFLLHLPFRNKGRFLWLAELTEAVKKHVEEKVGKAVQ 180
                                                    ELTEAVKKHVEEKVGKAVQ
Sbjct: 121 -----------------------------------------ELTEAVKKHVEEKVGKAVQ 180

Query: 181 KHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSI 240
           KHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVR EEDAETVYASIDLVSSI
Sbjct: 181 KHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRGEEDAETVYASIDLVSSI 240

Query: 241 IQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVED--EEEEVSQEDGGEVIDEMRHAS 300
           IQRKLRKIKEKDSD GRHMKGFDRLKVREPAPIVVED  EEEEVS ED GEVIDE     
Sbjct: 241 IQRKLRKIKEKDSDRGRHMKGFDRLKVREPAPIVVEDEEEEEEVSLEDSGEVIDE----- 300

Query: 301 EAFTDPLLLMLLLWSIQMYLIIVRTKYFDMPPLTIEEAIEQLKNIDHDFYGFRNEETGEI 360
                                IVRTKYFDMPPLT+EEAIEQLKNIDHDFYGFRNEETGEI
Sbjct: 301 ---------------------IVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEI 310

Query: 361 NILYKRKEGGYGLIIPKENGGAEKLEPVTVEPSREPSLAE 395
           NILYKRK+GGYGLIIPKENG AEKLEPVTVEP+REPSLAE
Sbjct: 361 NILYKRKDGGYGLIIPKENGRAEKLEPVTVEPAREPSLAE 310

[Close]

BLAST of Spg002354 vs. NCBI nr
Match: XP_022922607.1 (ribosome-binding factor PSRP1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 473.4 bits (1217), Expect = 1.9e-129
Identity = 273/403 (67.74%), Postives = 288/403 (71.46%), Query Frame = 0


Query: 1   MAAFTSSIQTNLFSCHSLAAAASSSS----STLPASFSL----HFSALKIHALSSHSSAF 60
           MAA TSS+QTNL S HSL  ++SSSS    ST P SFSL    + + LK HALSSH+SAF
Sbjct: 1   MAALTSSMQTNLLSAHSLTPSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAF 60

Query: 61  FNSCK-CFRTIDIAPRNRHATNSFTIRMSWDGPLSSVKLIVQGKNLEEEEDLDHILWDYE 120
           FNSC  CFRTI +APR RHAT SF+IRMSWDGPLSSVKLIVQGKNL              
Sbjct: 61  FNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNL-------------- 120

Query: 121 FASSVWGLFHNAFGLLARCFKDYKEMIQEFLLHLPFRNKGRFLWLAELTEAVKKHVEEKV 180
                                                         ELTEAVKKHVEEKV
Sbjct: 121 ----------------------------------------------ELTEAVKKHVEEKV 180

Query: 181 GKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASID 240
           GKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASID
Sbjct: 181 GKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASID 240

Query: 241 LVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVEDEEEEVSQEDGGEVIDEMR 300
           LVSSI+QRKLRKIKEKDSDHGRHMKGFDR K+REPAPIVVEDEEEEVSQEDGGE IDE  
Sbjct: 241 LVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDE-- 300

Query: 301 HASEAFTDPLLLMLLLWSIQMYLIIVRTKYFDMPPLTIEEAIEQLKNIDHDFYGFRNEET 360
                                   IVRTKYFDMPPLT+EEAIEQLKNIDHDFYGFRNEET
Sbjct: 301 ------------------------IVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET 317

Query: 361 GEINILYKRKEGGYGLIIPKENGGAEKLEPVTVEPSREPSLAE 395
           GEINILYKRK+GGYGLIIPKE+G AEK+E VTVE +RE SLAE
Sbjct: 361 GEINILYKRKDGGYGLIIPKEDGNAEKIETVTVEVAREASLAE 317

[Close]

BLAST of Spg002354 vs. NCBI nr
Match: KAG7014676.1 (Ribosome-binding factor PSRP1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 470.7 bits (1210), Expect = 1.2e-128
Identity = 272/407 (66.83%), Postives = 288/407 (70.76%), Query Frame = 0


Query: 1   MAAFTSSIQTNLFSCHSLAAAASSSS--------STLPASFSL----HFSALKIHALSSH 60
           MAA TSS+QTNL S HSL  ++SSSS        ST P SFSL    + + LK HALSSH
Sbjct: 1   MAALTSSMQTNLLSAHSLTPSSSSSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSH 60

Query: 61  SSAFFNSCK-CFRTIDIAPRNRHATNSFTIRMSWDGPLSSVKLIVQGKNLEEEEDLDHIL 120
           +SAFFNSC  CFRTI +APR RHAT SF+IRMSWDGPLSSVKLIVQGKNL          
Sbjct: 61  ASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNL---------- 120

Query: 121 WDYEFASSVWGLFHNAFGLLARCFKDYKEMIQEFLLHLPFRNKGRFLWLAELTEAVKKHV 180
                                                             ELTEAVKKHV
Sbjct: 121 --------------------------------------------------ELTEAVKKHV 180

Query: 181 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 240
           EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY
Sbjct: 181 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 240

Query: 241 ASIDLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVEDEEEEVSQEDGGEVI 300
           ASIDLVSSI+QRKLRKIKEKDSDHGRHMKGFDR K+R+PAPIVVEDEEEEVSQEDGGE I
Sbjct: 241 ASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIRDPAPIVVEDEEEEVSQEDGGEAI 300

Query: 301 DEMRHASEAFTDPLLLMLLLWSIQMYLIIVRTKYFDMPPLTIEEAIEQLKNIDHDFYGFR 360
           DE                          IVRTKYFDMPPLT+EEAIEQLKNIDHDFYGFR
Sbjct: 301 DE--------------------------IVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFR 321

Query: 361 NEETGEINILYKRKEGGYGLIIPKENGGAEKLEPVTVEPSREPSLAE 395
           NEETGEINILYKRK+GGYGLIIPKE+G AEK+E VTVE +RE SLAE
Sbjct: 361 NEETGEINILYKRKDGGYGLIIPKEDGNAEKIETVTVEVAREASLAE 321

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BLAST of Spg002354 vs. ExPASy Swiss-Prot
Match: P19954 (Ribosome-binding factor PSRP1, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP1 PE=1 SV=2)

HSP 1 Score: 305.1 bits (780), Expect = 1.2e-81
Identity = 175/352 (49.72%), Postives = 212/352 (60.23%), Query Frame = 0


Query: 45  LSSHSSAFFNSCKCFRTIDIAPRNRHATNSFTIRMSWDGPLSSVKLIVQGKNLEEEEDLD 104
           LSS  S F NSC     + +            + MSWDGPLSSVKLI+QG+NL       
Sbjct: 32  LSSLRSTFTNSCSLGLNVAVKSVQISRNKPNVVCMSWDGPLSSVKLILQGRNL------- 91

Query: 105 HILWDYEFASSVWGLFHNAFGLLARCFKDYKEMIQEFLLHLPFRNKGRFLWLAELTEAVK 164
                                                                E+++ V+
Sbjct: 92  -----------------------------------------------------EVSDNVR 151

Query: 165 KHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAE 224
            HVE+KVGK+V KHSHLVREVDVRLS RGG+  KGP++RRCEVTLFTK+HGV+RAEEDAE
Sbjct: 152 SHVEDKVGKSVAKHSHLVREVDVRLSARGGDLSKGPKLRRCEVTLFTKRHGVIRAEEDAE 211

Query: 225 TVYASIDLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVEDEE--EEVSQED 284
           ++Y+SIDLVSSIIQRKLRKIK+K SDHGRHMKGF+R KVR+P P+ +  EE  EEV    
Sbjct: 212 SLYSSIDLVSSIIQRKLRKIKDKVSDHGRHMKGFNRSKVRDPEPVRITREEVLEEVESAP 271

Query: 285 GGEVIDEMRHASEAFTDPLLLMLLLWSIQMYLIIVRTKYFDMPPLTIEEAIEQLKNIDHD 344
               +++     E                    +VRTKYFDMPPLTI EA+EQL+N+DHD
Sbjct: 272 APVSVEDDDFIEE--------------------VVRTKYFDMPPLTITEAVEQLENVDHD 302

Query: 345 FYGFRNEETGEINILYKRKEGGYGLIIPKENGGAEKLEPVTVEPSREPSLAE 395
           FY FRNEETG+INILYKRKEGGYGLIIPK+ G  EKLE + V+  ++PS AE
Sbjct: 332 FYAFRNEETGDINILYKRKEGGYGLIIPKD-GKTEKLESLPVQTDKQPSFAE 302

[Close]

BLAST of Spg002354 vs. ExPASy Swiss-Prot
Match: P74518 (Ribosome hibernation promotion factor OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=hpf PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 8.3e-27
Identity = 86/221 (38.91%), Postives = 123/221 (55.66%), Query Frame = 0


Query: 159 LTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRI---RRCEVTLFTKKHG 218
           +TEA+  +VEEKV +AV+   +L  +VDV LSV      +  RI    + EVT++     
Sbjct: 12  VTEAIHDYVEEKVERAVKHFQNLTTKVDVHLSV-----ARNARITNKHKAEVTVYA-NGT 71

Query: 219 VVRAEEDAETVYASIDLVSSIIQRKLRKIKEK--DSDHGRHMKGFDRLKVREPAPIVVED 278
           V+RA+E +E +YASIDLV+  I R+LRK KE+  D  HG        +K  E    +VED
Sbjct: 72  VIRAQEGSENLYASIDLVADKIARQLRKYKERIQDKQHG-------NVKTSE----IVED 131

Query: 279 E--EEEVSQEDGGEVIDEMRHASEAFTDPLLLMLLLWSIQMYLIIVRTKYFDMPPLTIEE 338
           +  EE +  +   E+  E                          ++R KYF MPP+ IE+
Sbjct: 132 KPVEENLIGDRAPELPSE--------------------------VLRMKYFAMPPMAIED 189

Query: 339 AIEQLKNIDHDFYGFRNEETGEINILYKRKEGGYGLIIPKE 373
           A+EQL+ +DHDFY FRN++T EIN++Y R  GGYG+I P +
Sbjct: 192 ALEQLQLVDHDFYMFRNKDTDEINVIYIRNHGGYGVIQPHQ 189

[Close]

BLAST of Spg002354 vs. ExPASy Swiss-Prot
Match: P47908 (Ribosome hibernation promotion factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=hpf PE=2 SV=2)

HSP 1 Score: 114.0 bits (284), Expect = 3.9e-24
Identity = 80/215 (37.21%), Postives = 115/215 (53.49%), Query Frame = 0


Query: 159 LTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVR 218
           +TE++  +VE K+ KA +       +VDV LSV      +     + EVT++     V+R
Sbjct: 12  VTESIHDYVESKLEKATKHFQTFATKVDVHLSVANN--ARITDKHKAEVTVYA-NGTVIR 71

Query: 219 AEEDAETVYASIDLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVEDEEEEV 278
           A+E +E +YASIDLVS  I R+LRK KEK+     H                V+++  EV
Sbjct: 72  AQEGSENLYASIDLVSDKIARQLRKYKEKNFGKKTH----------------VQEKTSEV 131

Query: 279 SQEDGGEVIDEM--RHASEAFTDPLLLMLLLWSIQMYLIIVRTKYFDMPPLTIEEAIEQL 338
             ED   V D +    A E  ++                +VR KYF MPP+TI+EA+EQL
Sbjct: 132 LPED--PVPDNLIGDRAPELPSE----------------VVRMKYFAMPPMTIDEALEQL 189

Query: 339 KNIDHDFYGFRNEETGEINILYKRKEGGYGLIIPK 372
           + +DHDFY F N++T  IN++Y R  GGYG+I P+
Sbjct: 192 QLVDHDFYMFLNKDTNAINVIYIRNHGGYGVIQPR 189

[Close]

BLAST of Spg002354 vs. ExPASy Swiss-Prot
Match: Q9RVE7 (Ribosome hibernation promotion factor OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) OX=243230 GN=hpf PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 4.3e-15
Identity = 66/212 (31.13%), Postives = 116/212 (54.72%), Query Frame = 0


Query: 158 ELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVV 217
           E+TE ++++VEEK+ + + +++  + +  V L+VR  +     R  R EV L     G++
Sbjct: 12  EVTEPMREYVEEKLSR-LDRYTDQITDARVTLTVR--DVRNNERRNRVEVQL-NVPGGII 71

Query: 218 RAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVR-EPAPIVVEDEEE 277
           RAEE    +YA+ID  S +++R+LRK K       R+MK   R + R EP P      E 
Sbjct: 72  RAEEHHADMYAAIDKASDVLERQLRKFKT------RYMK--QRQEGRPEPLP---GPAEA 131

Query: 278 EVSQEDGGEVIDEMRHASEAFTDPLLLMLLLWSIQMYLIIVRTKYFDMPPLTIEEAIEQL 337
           EV+ +  G  +D++                    + +  IVR K F++ P++ E+A+ Q+
Sbjct: 132 EVNAQGSGAAMDDVS-------------------EFHPEIVRQKRFELRPMSAEDAVVQM 188

Query: 338 KNIDHDFYGFRNEETGEINILYKRKEGGYGLI 369
           + + HDFY F++ + G+  ++Y+R++G YGLI
Sbjct: 192 EALGHDFYVFQDLQ-GQTGVVYRRRDGHYGLI 188

[Close]

BLAST of Spg002354 vs. ExPASy Swiss-Prot
Match: Q4L4H7 (Ribosome hibernation promotion factor OS=Staphylococcus haemolyticus (strain JCSC1435) OX=279808 GN=hpf PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.2e-14
Identity = 65/211 (30.81%), Postives = 111/211 (52.61%), Query Frame = 0


Query: 159 LTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVR 218
           +T+A++ ++E+K+GK ++++ + V      + V+  +        + EVT+   K+  +R
Sbjct: 13  ITDAIRNYIEDKIGK-LERYFNDVPNAVAHVKVKTYQ----NSTTKIEVTI-PLKNVTLR 72

Query: 219 AEEDAETVYASIDLVSSIIQRKLRKIKEK-DSDHGRHMKGFDRLKVREPAPIVVEDEEEE 278
           AEE  + +YA IDLV+S ++R++RK K + +  H  H          EP   V   E +E
Sbjct: 73  AEERHDDLYAGIDLVTSKLERQVRKYKTRVNRKHKTH---------GEPEAFVA--EVQE 132

Query: 279 VSQEDGGEVIDEMRHASEAFTDPLLLMLLLWSIQMYLIIVRTKYFDMPPLTIEEAIEQLK 338
              E+  +V  E  + SE                  + I+R+K F + P+  EEA+ Q++
Sbjct: 133 APPENVDDVNAEPTNDSE------------------IEIIRSKQFSLKPMDSEEAVLQME 188

Query: 339 NIDHDFYGFRNEETGEINILYKRKEGGYGLI 369
            + HDFY F + ET   +I+YKRK+G YGLI
Sbjct: 193 LLGHDFYIFTDRETDGTSIVYKRKDGKYGLI 188

[Close]

BLAST of Spg002354 vs. ExPASy TrEMBL
Match: A0A6J1CJG5 (ribosome-binding factor PSRP1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111011561 PE=3 SV=1)

HSP 1 Score: 475.3 bits (1222), Expect = 2.4e-130
Identity = 276/400 (69.00%), Postives = 285/400 (71.25%), Query Frame = 0


Query: 1   MAAFTSSIQTNLFSCHSLAAAASSSSSTLPASFSL----HFSALKIHALSSHSSAFFNSC 60
           MA  TSS+ TNL S    A ++SS+ ST PASFSL    + SALKIH LSSH+S FFNSC
Sbjct: 1   MATLTSSMHTNLLS----APSSSSTFSTFPASFSLLTSTNSSALKIHPLSSHTSPFFNSC 60

Query: 61  KCFRTIDIAPRNRHATNSFTIRMSWDGPLSSVKLIVQGKNLEEEEDLDHILWDYEFASSV 120
            CF TI IAPRNRHA NSFTIRMSWDGPLSSVKLIVQGKNL                   
Sbjct: 61  NCFTTIQIAPRNRHAANSFTIRMSWDGPLSSVKLIVQGKNL------------------- 120

Query: 121 WGLFHNAFGLLARCFKDYKEMIQEFLLHLPFRNKGRFLWLAELTEAVKKHVEEKVGKAVQ 180
                                                    ELTEAVKKHVEEKVGKAVQ
Sbjct: 121 -----------------------------------------ELTEAVKKHVEEKVGKAVQ 180

Query: 181 KHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSI 240
           KHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVR EEDAETVYASIDLVSSI
Sbjct: 181 KHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRGEEDAETVYASIDLVSSI 240

Query: 241 IQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVED--EEEEVSQEDGGEVIDEMRHAS 300
           IQRKLRKIKEKDSD GRHMKGFDRLKVREPAPIVVED  EEEEVS ED GEVIDE     
Sbjct: 241 IQRKLRKIKEKDSDRGRHMKGFDRLKVREPAPIVVEDEEEEEEVSLEDSGEVIDE----- 300

Query: 301 EAFTDPLLLMLLLWSIQMYLIIVRTKYFDMPPLTIEEAIEQLKNIDHDFYGFRNEETGEI 360
                                IVRTKYFDMPPLT+EEAIEQLKNIDHDFYGFRNEETGEI
Sbjct: 301 ---------------------IVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEI 310

Query: 361 NILYKRKEGGYGLIIPKENGGAEKLEPVTVEPSREPSLAE 395
           NILYKRK+GGYGLIIPKENG AEKLEPVTVEP+REPSLAE
Sbjct: 361 NILYKRKDGGYGLIIPKENGRAEKLEPVTVEPAREPSLAE 310

[Close]

BLAST of Spg002354 vs. ExPASy TrEMBL
Match: A0A6J1E3S3 (ribosome-binding factor PSRP1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111430564 PE=3 SV=1)

HSP 1 Score: 473.4 bits (1217), Expect = 9.2e-130
Identity = 273/403 (67.74%), Postives = 288/403 (71.46%), Query Frame = 0


Query: 1   MAAFTSSIQTNLFSCHSLAAAASSSS----STLPASFSL----HFSALKIHALSSHSSAF 60
           MAA TSS+QTNL S HSL  ++SSSS    ST P SFSL    + + LK HALSSH+SAF
Sbjct: 1   MAALTSSMQTNLLSAHSLTPSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAF 60

Query: 61  FNSCK-CFRTIDIAPRNRHATNSFTIRMSWDGPLSSVKLIVQGKNLEEEEDLDHILWDYE 120
           FNSC  CFRTI +APR RHAT SF+IRMSWDGPLSSVKLIVQGKNL              
Sbjct: 61  FNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNL-------------- 120

Query: 121 FASSVWGLFHNAFGLLARCFKDYKEMIQEFLLHLPFRNKGRFLWLAELTEAVKKHVEEKV 180
                                                         ELTEAVKKHVEEKV
Sbjct: 121 ----------------------------------------------ELTEAVKKHVEEKV 180

Query: 181 GKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASID 240
           GKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASID
Sbjct: 181 GKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASID 240

Query: 241 LVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVEDEEEEVSQEDGGEVIDEMR 300
           LVSSI+QRKLRKIKEKDSDHGRHMKGFDR K+REPAPIVVEDEEEEVSQEDGGE IDE  
Sbjct: 241 LVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDE-- 300

Query: 301 HASEAFTDPLLLMLLLWSIQMYLIIVRTKYFDMPPLTIEEAIEQLKNIDHDFYGFRNEET 360
                                   IVRTKYFDMPPLT+EEAIEQLKNIDHDFYGFRNEET
Sbjct: 301 ------------------------IVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET 317

Query: 361 GEINILYKRKEGGYGLIIPKENGGAEKLEPVTVEPSREPSLAE 395
           GEINILYKRK+GGYGLIIPKE+G AEK+E VTVE +RE SLAE
Sbjct: 361 GEINILYKRKDGGYGLIIPKEDGNAEKIETVTVEVAREASLAE 317

[Close]

BLAST of Spg002354 vs. ExPASy TrEMBL
Match: A0A5D3BQR1 (Ribosome-binding factor PSRP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00050 PE=3 SV=1)

HSP 1 Score: 470.3 bits (1209), Expect = 7.8e-129
Identity = 271/396 (68.43%), Postives = 284/396 (71.72%), Query Frame = 0


Query: 1   MAAFTSSIQTNLFSCHSLAAAASSSS--STLPASFSLHFSALKIHALSSHSSAFFNSCKC 60
           MA  TSS+Q NL S HSL     SSS  S  PA FSLHFSALK+HALSS++SAFFNSCK 
Sbjct: 1   MATLTSSMQANLLSDHSLPPPHPSSSTVSYFPAPFSLHFSALKVHALSSNASAFFNSCKN 60

Query: 61  FRTIDIAPRNRHATNSFTIRMSWDGPLSSVKLIVQGKNLEEEEDLDHILWDYEFASSVWG 120
           F TI+ A RNRHA+NSF+IRM+WDG LSSVKLIVQGKNL                     
Sbjct: 61  FGTIETASRNRHASNSFSIRMTWDGHLSSVKLIVQGKNL--------------------- 120

Query: 121 LFHNAFGLLARCFKDYKEMIQEFLLHLPFRNKGRFLWLAELTEAVKKHVEEKVGKAVQKH 180
                                                  ELTEAVKKHVEEKVGKAVQKH
Sbjct: 121 ---------------------------------------ELTEAVKKHVEEKVGKAVQKH 180

Query: 181 SHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQ 240
           SHLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHGVVRAEEDAETV+ASIDLVSSIIQ
Sbjct: 181 SHLVREVDVRLSVRGGEFGKGQRIRRCEVTLFTKKHGVVRAEEDAETVFASIDLVSSIIQ 240

Query: 241 RKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVEDEEEEVSQEDGGEVIDEMRHASEAFT 300
           RKLRKIKEKDSD GRH+KGFDR KVREPAPIVVEDEEEEV QEDGGEVIDE         
Sbjct: 241 RKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDE--------- 300

Query: 301 DPLLLMLLLWSIQMYLIIVRTKYFDMPPLTIEEAIEQLKNIDHDFYGFRNEETGEINILY 360
                            IVRTKYFDMPPLT+EEAIEQLKNIDHDFYGFRNEETGEINILY
Sbjct: 301 -----------------IVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILY 310

Query: 361 KRKEGGYGLIIPKENGGAEKLEPVTVEPSREPSLAE 395
           KRK+GGYGLIIPKENG AEKLEPVTVE +REPSLAE
Sbjct: 361 KRKDGGYGLIIPKENGTAEKLEPVTVEAAREPSLAE 310

[Close]

BLAST of Spg002354 vs. ExPASy TrEMBL
Match: A0A1S3CCT7 (ribosome-binding factor PSRP1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499579 PE=3 SV=1)

HSP 1 Score: 470.3 bits (1209), Expect = 7.8e-129
Identity = 271/396 (68.43%), Postives = 284/396 (71.72%), Query Frame = 0


Query: 1   MAAFTSSIQTNLFSCHSLAAAASSSS--STLPASFSLHFSALKIHALSSHSSAFFNSCKC 60
           MA  TSS+Q NL S HSL     SSS  S  PA FSLHFSALK+HALSS++SAFFNSCK 
Sbjct: 1   MATLTSSMQANLLSDHSLPPPHPSSSTVSYFPAPFSLHFSALKVHALSSNASAFFNSCKN 60

Query: 61  FRTIDIAPRNRHATNSFTIRMSWDGPLSSVKLIVQGKNLEEEEDLDHILWDYEFASSVWG 120
           F TI+ A RNRHA+NSF+IRM+WDG LSSVKLIVQGKNL                     
Sbjct: 61  FGTIETASRNRHASNSFSIRMTWDGHLSSVKLIVQGKNL--------------------- 120

Query: 121 LFHNAFGLLARCFKDYKEMIQEFLLHLPFRNKGRFLWLAELTEAVKKHVEEKVGKAVQKH 180
                                                  ELTEAVKKHVEEKVGKAVQKH
Sbjct: 121 ---------------------------------------ELTEAVKKHVEEKVGKAVQKH 180

Query: 181 SHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQ 240
           SHLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHGVVRAEEDAETV+ASIDLVSSIIQ
Sbjct: 181 SHLVREVDVRLSVRGGEFGKGQRIRRCEVTLFTKKHGVVRAEEDAETVFASIDLVSSIIQ 240

Query: 241 RKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVEDEEEEVSQEDGGEVIDEMRHASEAFT 300
           RKLRKIKEKDSD GRH+KGFDR KVREPAPIVVEDEEEEV QEDGGEVIDE         
Sbjct: 241 RKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDE--------- 300

Query: 301 DPLLLMLLLWSIQMYLIIVRTKYFDMPPLTIEEAIEQLKNIDHDFYGFRNEETGEINILY 360
                            IVRTKYFDMPPLT+EEAIEQLKNIDHDFYGFRNEETGEINILY
Sbjct: 301 -----------------IVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILY 310

Query: 361 KRKEGGYGLIIPKENGGAEKLEPVTVEPSREPSLAE 395
           KRK+GGYGLIIPKENG AEKLEPVTVE +REPSLAE
Sbjct: 361 KRKDGGYGLIIPKENGTAEKLEPVTVEAAREPSLAE 310

[Close]

BLAST of Spg002354 vs. ExPASy TrEMBL
Match: A0A6J1J523 (ribosome-binding factor PSRP1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111482691 PE=3 SV=1)

HSP 1 Score: 461.1 bits (1185), Expect = 4.7e-126
Identity = 263/387 (67.96%), Postives = 278/387 (71.83%), Query Frame = 0


Query: 13  FSCHSLAAAASSSSSTLPASFSL----HFSALKIHALSSHSSAFFNSCK-CFRTIDIAPR 72
           FS  S ++++SS+ ST P SFSL    + + LKIHALSSH+SAFFNSC  CFRTI IAPR
Sbjct: 23  FSSSSSSSSSSSTVSTFPTSFSLPTSTNSAVLKIHALSSHASAFFNSCNHCFRTIVIAPR 82

Query: 73  NRHATNSFTIRMSWDGPLSSVKLIVQGKNLEEEEDLDHILWDYEFASSVWGLFHNAFGLL 132
            RHAT SF+IRMSWDGPLSSVKLIVQGKNL                              
Sbjct: 83  KRHATRSFSIRMSWDGPLSSVKLIVQGKNL------------------------------ 142

Query: 133 ARCFKDYKEMIQEFLLHLPFRNKGRFLWLAELTEAVKKHVEEKVGKAVQKHSHLVREVDV 192
                                         ELTEAVKKHVEEKVGKAVQKHSHLVREVDV
Sbjct: 143 ------------------------------ELTEAVKKHVEEKVGKAVQKHSHLVREVDV 202

Query: 193 RLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK 252
           RLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSI+QRKLRKIKEK
Sbjct: 203 RLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEK 262

Query: 253 DSDHGRHMKGFDRLKVREPAPIVVEDEEEEVSQEDGGEVIDEMRHASEAFTDPLLLMLLL 312
           DSDHGRHMKGFDR K+REPAPIVVEDEEEEVSQEDGGE IDE                  
Sbjct: 263 DSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDE------------------ 322

Query: 313 WSIQMYLIIVRTKYFDMPPLTIEEAIEQLKNIDHDFYGFRNEETGEINILYKRKEGGYGL 372
                   IVRTKYFDMPPLT+EEAIEQLKNIDHDFYGFRNEETGEINILYKRK+GGYGL
Sbjct: 323 --------IVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGL 323

Query: 373 IIPKENGGAEKLEPVTVEPSREPSLAE 395
           IIPKENG AEK+E VTVE +RE SLAE
Sbjct: 383 IIPKENGNAEKIETVTVEVAREASLAE 323

[Close]

BLAST of Spg002354 vs. TAIR 10
Match: AT5G24490.1 (30S ribosomal protein, putative )

HSP 1 Score: 323.2 bits (827), Expect = 3.0e-88
Identity = 183/329 (55.62%), Postives = 211/329 (64.13%), Query Frame = 0


Query: 67  RNRHATNSFTIRMSWDGPLSSVKLIVQGKNLEEEEDLDHILWDYEFASSVWGLFHNAFGL 126
           R+ +  +S  ++MSWDGPL+SVKLI+QGKNL                             
Sbjct: 61  RHSYCRSSLAVKMSWDGPLASVKLIIQGKNL----------------------------- 120

Query: 127 LARCFKDYKEMIQEFLLHLPFRNKGRFLWLAELTEAVKKHVEEKVGKAVQKHSHLVREVD 186
                                          EL+E +K+HVEEKVGK+VQKHSHLVREVD
Sbjct: 121 -------------------------------ELSEPIKQHVEEKVGKSVQKHSHLVREVD 180

Query: 187 VRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE 246
           VRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYA IDLVS+IIQRKLRKIKE
Sbjct: 181 VRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYACIDLVSTIIQRKLRKIKE 240

Query: 247 KDSDHGRHMKGFDRLKVREPA-PIVVEDEEEEVSQEDGGEVIDEMRHASEAFTDPLLLML 306
           KDSDHGRHMKGF+RLKVREP    VVED E+      G E  ++                
Sbjct: 241 KDSDHGRHMKGFNRLKVREPVIEPVVEDVEDSTDSSVGEEEEED---------------- 300

Query: 307 LLWSIQMYLIIVRTKYFDMPPLTIEEAIEQLKNIDHDFYGFRNEETGEINILYKRKEGGY 366
                 +   IVRTK F+MPPLT+ EA+EQL+ + HDFYGF+NEETGEINI+YKRKEGGY
Sbjct: 301 -----DLIKEIVRTKTFEMPPLTVAEAVEQLELVSHDFYGFQNEETGEINIVYKRKEGGY 308

Query: 367 GLIIPKENGGAEKLEPVTVEPSREPSLAE 395
           GLIIPK++G AEK+EP+  E   E S AE
Sbjct: 361 GLIIPKKDGKAEKVEPLPTEQLNEHSFAE 308

The following BLAST results are available for this feature:

BLAST of Spg002354 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147328.1	3.5e-131	68.94	ribosome-binding factor PSRP1, chloroplastic [Cucumis sativus] >KAE8651998.1 hyp...	[more]
XP_023551717.1	5.0e-130	68.33	ribosome-binding factor PSRP1, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022141073.1	5.0e-130	69.00	ribosome-binding factor PSRP1, chloroplastic [Momordica charantia]	[more]
XP_022922607.1	1.9e-129	67.74	ribosome-binding factor PSRP1, chloroplastic [Cucurbita moschata]	[more]
KAG7014676.1	1.2e-128	66.83	Ribosome-binding factor PSRP1, chloroplastic, partial [Cucurbita argyrosperma su...	[more]

BLAST of Spg002354 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19954	1.2e-81	49.72	Ribosome-binding factor PSRP1, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSR...	[more]
P74518	8.3e-27	38.91	Ribosome hibernation promotion factor OS=Synechocystis sp. (strain PCC 6803 / Ka...	[more]
P47908	3.9e-24	37.21	Ribosome hibernation promotion factor OS=Synechococcus sp. (strain ATCC 27264 / ...	[more]
Q9RVE7	4.3e-15	31.13	Ribosome hibernation promotion factor OS=Deinococcus radiodurans (strain ATCC 13...	[more]
Q4L4H7	1.2e-14	30.81	Ribosome hibernation promotion factor OS=Staphylococcus haemolyticus (strain JCS...	[more]

BLAST of Spg002354 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CJG5	2.4e-130	69.00	ribosome-binding factor PSRP1, chloroplastic OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1E3S3	9.2e-130	67.74	ribosome-binding factor PSRP1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A5D3BQR1	7.8e-129	68.43	Ribosome-binding factor PSRP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3CCT7	7.8e-129	68.43	ribosome-binding factor PSRP1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A6J1J523	4.7e-126	67.96	ribosome-binding factor PSRP1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of Spg002354 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G24490.1	3.0e-88	55.62	30S ribosomal protein, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032528	Sigma 54 modulation/S30EA ribosomal protein, C-terminal	PFAM	PF16321	Ribosom_S30AE_C	coord: 316..367 e-value: 7.2E-24 score: 83.2
IPR038416	Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain superfamily	GENE3D	3.30.505.50		coord: 326..376 e-value: 7.6E-20 score: 72.2
IPR036567	Ribosome hibernation promotion factor-like	GENE3D	3.30.160.100		coord: 157..252 e-value: 1.3E-18 score: 69.1
IPR036567	Ribosome hibernation promotion factor-like	SUPERFAMILY	69754	Ribosome binding protein Y (YfiA homologue)	coord: 158..254
IPR003489	Ribosome hibernation promoting factor/RaiA	TIGRFAM	TIGR00741	TIGR00741	coord: 158..252 e-value: 1.0E-15 score: 56.0
IPR003489	Ribosome hibernation promoting factor/RaiA	PFAM	PF02482	Ribosomal_S30AE	coord: 158..247 e-value: 1.2E-18 score: 67.6
IPR003489	Ribosome hibernation promoting factor/RaiA	CDD	cd00552	RaiA	coord: 158..247 e-value: 3.76644E-21 score: 85.2593
None	No IPR available	PANTHER	PTHR33231:SF1	30S RIBOSOMAL PROTEIN	coord: 74..102 coord: 158..374
None	No IPR available	PANTHER	PTHR33231	30S RIBOSOMAL PROTEIN	coord: 74..102 coord: 158..374

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg002354.1	Spg002354.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006417	regulation of translation
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0005840	ribosome
molecular_function	GO:0043021	ribonucleoprotein complex binding