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Spg002293 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGAACCTGCCGCAGATTGCTTCTAGGTTCCTAGACAGAAACTTGTTAATCACTACTAGTGTGTACGTCTGTTTTTCACCTTTGTAATGCATGCTCATTCTGGTCGTTTGAGTAAAAAGACTAAAGAAGAAAGAAATGGAATATCACATGTATTTACTTTTTCTTGCACAATCAAAGATAAAATTTACTTAGTTTTCTATTGTGTCAGGTGGCGCCATATTCACGTGGGGCTGGGGAGGTTCTCATGGAACGTTTTCTGTGGATGGTCATTCTTCTGGGGGTCAGCTGGTATGCTTCTCTCACTTTTTTTTTTTGCACTGCCTTGTTATATCTATGGTTCCTCAATGAGGATTTGCTGGATTTGTTAAACTTGGGGACATTTGAATACGAATGCTTGAAATCTACATTTTTGTTTTTCCTGCATTTGCTTTACGATCATTTAGCAAATCAATTCTCATTGGAGTTGATTCATAGTAAAAAAGTAGTATCCAAAATATATTGAAATATAAGAGATAAAAGGAACAAGATAACTCCTCCAAGTATTCCAGATACTGGAACCTCCTTTCTTGAGCTGCCATTAAACCCTAAACCACTAAACAATTGCCTGCCTTCAACCTTTTTCACTCACTCTATTTATAGGAAACCACCCTAACAACTTCACAATCTAATTACTGCAATACCCTAATCTTATTCCTAATTGGCTAATTCTATCTTAATACCATTCCAATCAAAATGGTATTGGAAAGGGAATTTTAGTTGAAATTTGTGAGTTTTTGGATATTGATTTAATTGTTCATCTGTGCATTGATGGGGCTTAATTTTTTTTTGGAATACTTGATTTTGATTGAAATTAGTGGGTTGGAAAAGTTTTTACTTTGTCTTCTGTTAAAATTTGTGGATATTATGGAGTGGAAATTGAATAGAAGGTGAAATTGCAACACTTGAGTAAGTTTAGGGTTAAAAGACGACGGAATTGAAAGTTTAGGTGTAAATTGATACACCTTATTAAGTTTGGGGTAAAATTTTATTATCTCTCTGTCTTTTCTCAATATATATATATATATATATATATATATATATATATATATTTTGCATAATTATTTGTTTTGTATTAGTTGTAGACCGTATTCTGAGTTCAAGATTTCGGTCCCCTCCAATATTTGGCCTTGGACTAGATTTAGGACCATACTCAATGTTGTGTACCCATAAAGGATCTGCTTCAATTGTAGGGACATGGAAGTGACGTTGACTATGTGAAACCGACAATGATCGACCTTGGAGAGAATGTGAAGGCAGTACAAGTCTCCTGTGGATTCAACCACACTGGTGCAATACTCGAGTACAAGTGAGTTTCGAACTTTTGACTACGAGATATTTCCATTTCCAGTACAATAGTAAAAGGGAGAGGCTGTGTTCATTAATTTCCAGTCCAAAGTCATCATAATATGTATCATTCATATAAATACATCATTCTCAGTTAAGGAAAATAAAATTGTAAACTTTGTATATGACATGCTTCTATTGTCAGAGAGAAATAATCATGAACATGGGAGAATGATGCCCAATCTGAGGATATTTATTAAACATTCAATTTGGAATGGCTCTTTGCAGTAGAAGTTCATAATGTTATATACTCATTAGATTTCTGCATTGCCAGCAGTGTTGATCACAATGATGATCTTGGTAATGACTTTTTTCCCCCTTTTCTTAAGGTCTCTTAAATGGTAAATTGATTTGTTTATTTGGAAACCTAAGTAAAAGAAAAAAAAGAAGTCCCTATTCTCT ATGAACCTGCCGCAGATTGCTTCTAGGTTCCTAGACAGAAACTTGTTAATCACTACTAGTGTGTACGTCTGTGGCGCCATATTCACGTGGGGCTGGGGAGGTTCTCATGGAACGTTTTCTGTGGATGGTCATTCTTCTGGGGGTCAGCTGGGACATGGAAGTGACGTTGACTATGTGAAACCGACAATGATCGACCTTGGAGAGAATGTGAAGGCAGTACAAGTCTCCTGTGGATTCAACCACACTGGTGCAATACTCGAGTACAAGTGA ATGAACCTGCCGCAGATTGCTTCTAGGTTCCTAGACAGAAACTTGTTAATCACTACTAGTGTGTACGTCTGTGGCGCCATATTCACGTGGGGCTGGGGAGGTTCTCATGGAACGTTTTCTGTGGATGGTCATTCTTCTGGGGGTCAGCTGGGACATGGAAGTGACGTTGACTATGTGAAACCGACAATGATCGACCTTGGAGAGAATGTGAAGGCAGTACAAGTCTCCTGTGGATTCAACCACACTGGTGCAATACTCGAGTACAAGTGA MNLPQIASRFLDRNLLITTSVYVCGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGAILEYK Homology
BLAST of Spg002293 vs. NCBI nr
Match: XP_038883567.1 (ultraviolet-B receptor UVR8 isoform X1 [Benincasa hispida]) HSP 1 Score: 141.7 bits (356), Expect = 3.0e-30 Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0
BLAST of Spg002293 vs. NCBI nr
Match: XP_038883571.1 (ultraviolet-B receptor UVR8 isoform X5 [Benincasa hispida]) HSP 1 Score: 141.7 bits (356), Expect = 3.0e-30 Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0
BLAST of Spg002293 vs. NCBI nr
Match: XP_022966331.1 (ultraviolet-B receptor UVR8 isoform X1 [Cucurbita maxima]) HSP 1 Score: 139.4 bits (350), Expect = 1.5e-29 Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0
BLAST of Spg002293 vs. NCBI nr
Match: XP_022966332.1 (ultraviolet-B receptor UVR8 isoform X2 [Cucurbita maxima]) HSP 1 Score: 139.4 bits (350), Expect = 1.5e-29 Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0
BLAST of Spg002293 vs. NCBI nr
Match: XP_022925248.1 (ultraviolet-B receptor UVR8 isoform X3 [Cucurbita moschata]) HSP 1 Score: 139.4 bits (350), Expect = 1.5e-29 Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0
BLAST of Spg002293 vs. ExPASy Swiss-Prot
Match: D3ZGQ5 (Serine/threonine-protein kinase Nek8 OS=Rattus norvegicus OX=10116 GN=Nek8 PE=1 SV=1) HSP 1 Score: 50.8 bits (120), Expect = 9.1e-06 Identity = 30/82 (36.59%), Postives = 41/82 (50.00%), Query Frame = 0
BLAST of Spg002293 vs. ExPASy Swiss-Prot
Match: Q86SG6 (Serine/threonine-protein kinase Nek8 OS=Homo sapiens OX=9606 GN=NEK8 PE=1 SV=1) HSP 1 Score: 49.7 bits (117), Expect = 2.0e-05 Identity = 30/82 (36.59%), Postives = 40/82 (48.78%), Query Frame = 0
BLAST of Spg002293 vs. ExPASy Swiss-Prot
Match: Q9FN03 (Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana OX=3702 GN=UVR8 PE=1 SV=1) HSP 1 Score: 44.7 bits (104), Expect = 6.5e-04 Identity = 21/63 (33.33%), Postives = 33/63 (52.38%), Query Frame = 0
BLAST of Spg002293 vs. ExPASy TrEMBL
Match: A0A6J1HRS2 (PH, RCC1 and FYVE domains-containing protein 1 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111466019 PE=4 SV=1) HSP 1 Score: 139.4 bits (350), Expect = 7.1e-30 Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0
BLAST of Spg002293 vs. ExPASy TrEMBL
Match: A0A6J1HMP4 (ultraviolet-B receptor UVR8 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111466019 PE=4 SV=1) HSP 1 Score: 139.4 bits (350), Expect = 7.1e-30 Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0
BLAST of Spg002293 vs. ExPASy TrEMBL
Match: A0A6J1HP08 (ultraviolet-B receptor UVR8 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466019 PE=4 SV=1) HSP 1 Score: 139.4 bits (350), Expect = 7.1e-30 Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0
BLAST of Spg002293 vs. ExPASy TrEMBL
Match: A0A6J1EEN4 (ultraviolet-B receptor UVR8 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111432545 PE=4 SV=1) HSP 1 Score: 139.4 bits (350), Expect = 7.1e-30 Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0
BLAST of Spg002293 vs. ExPASy TrEMBL
Match: A0A5A7TCI0 (Ultraviolet-B receptor UVR8 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G001080 PE=4 SV=1) HSP 1 Score: 137.9 bits (346), Expect = 2.1e-29 Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 0
BLAST of Spg002293 vs. TAIR 10
Match: AT5G08710.1 (Regulator of chromosome condensation (RCC1) family protein ) HSP 1 Score: 120.9 bits (302), Expect = 5.1e-28 Identity = 50/62 (80.65%), Postives = 58/62 (93.55%), Query Frame = 0
BLAST of Spg002293 vs. TAIR 10
Match: AT5G63860.1 (Regulator of chromosome condensation (RCC1) family protein ) HSP 1 Score: 44.7 bits (104), Expect = 4.6e-05 Identity = 21/63 (33.33%), Postives = 33/63 (52.38%), Query Frame = 0
BLAST of Spg002293 vs. TAIR 10
Match: AT1G65920.1 (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain ) HSP 1 Score: 41.6 bits (96), Expect = 3.9e-04 Identity = 31/91 (34.07%), Postives = 41/91 (45.05%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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