Spg002293 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg002293
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionultraviolet-B receptor UVR8 isoform X1
Locationscaffold1: 30511951 .. 30513735 (-)
RNA-Seq ExpressionSpg002293
SyntenySpg002293
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCTGCCGCAGATTGCTTCTAGGTTCCTAGACAGAAACTTGTTAATCACTACTAGTGTGTACGTCTGTTTTTCACCTTTGTAATGCATGCTCATTCTGGTCGTTTGAGTAAAAAGACTAAAGAAGAAAGAAATGGAATATCACATGTATTTACTTTTTCTTGCACAATCAAAGATAAAATTTACTTAGTTTTCTATTGTGTCAGGTGGCGCCATATTCACGTGGGGCTGGGGAGGTTCTCATGGAACGTTTTCTGTGGATGGTCATTCTTCTGGGGGTCAGCTGGTATGCTTCTCTCACTTTTTTTTTTTGCACTGCCTTGTTATATCTATGGTTCCTCAATGAGGATTTGCTGGATTTGTTAAACTTGGGGACATTTGAATACGAATGCTTGAAATCTACATTTTTGTTTTTCCTGCATTTGCTTTACGATCATTTAGCAAATCAATTCTCATTGGAGTTGATTCATAGTAAAAAAGTAGTATCCAAAATATATTGAAATATAAGAGATAAAAGGAACAAGATAACTCCTCCAAGTATTCCAGATACTGGAACCTCCTTTCTTGAGCTGCCATTAAACCCTAAACCACTAAACAATTGCCTGCCTTCAACCTTTTTCACTCACTCTATTTATAGGAAACCACCCTAACAACTTCACAATCTAATTACTGCAATACCCTAATCTTATTCCTAATTGGCTAATTCTATCTTAATACCATTCCAATCAAAATGGTATTGGAAAGGGAATTTTAGTTGAAATTTGTGAGTTTTTGGATATTGATTTAATTGTTCATCTGTGCATTGATGGGGCTTAATTTTTTTTTGGAATACTTGATTTTGATTGAAATTAGTGGGTTGGAAAAGTTTTTACTTTGTCTTCTGTTAAAATTTGTGGATATTATGGAGTGGAAATTGAATAGAAGGTGAAATTGCAACACTTGAGTAAGTTTAGGGTTAAAAGACGACGGAATTGAAAGTTTAGGTGTAAATTGATACACCTTATTAAGTTTGGGGTAAAATTTTATTATCTCTCTGTCTTTTCTCAATATATATATATATATATATATATATATATATATATATATTTTGCATAATTATTTGTTTTGTATTAGTTGTAGACCGTATTCTGAGTTCAAGATTTCGGTCCCCTCCAATATTTGGCCTTGGACTAGATTTAGGACCATACTCAATGTTGTGTACCCATAAAGGATCTGCTTCAATTGTAGGGACATGGAAGTGACGTTGACTATGTGAAACCGACAATGATCGACCTTGGAGAGAATGTGAAGGCAGTACAAGTCTCCTGTGGATTCAACCACACTGGTGCAATACTCGAGTACAAGTGAGTTTCGAACTTTTGACTACGAGATATTTCCATTTCCAGTACAATAGTAAAAGGGAGAGGCTGTGTTCATTAATTTCCAGTCCAAAGTCATCATAATATGTATCATTCATATAAATACATCATTCTCAGTTAAGGAAAATAAAATTGTAAACTTTGTATATGACATGCTTCTATTGTCAGAGAGAAATAATCATGAACATGGGAGAATGATGCCCAATCTGAGGATATTTATTAAACATTCAATTTGGAATGGCTCTTTGCAGTAGAAGTTCATAATGTTATATACTCATTAGATTTCTGCATTGCCAGCAGTGTTGATCACAATGATGATCTTGGTAATGACTTTTTTCCCCCTTTTCTTAAGGTCTCTTAAATGGTAAATTGATTTGTTTATTTGGAAACCTAAGTAAAAGAAAAAAAAGAAGTCCCTATTCTCT

mRNA sequence

ATGAACCTGCCGCAGATTGCTTCTAGGTTCCTAGACAGAAACTTGTTAATCACTACTAGTGTGTACGTCTGTGGCGCCATATTCACGTGGGGCTGGGGAGGTTCTCATGGAACGTTTTCTGTGGATGGTCATTCTTCTGGGGGTCAGCTGGGACATGGAAGTGACGTTGACTATGTGAAACCGACAATGATCGACCTTGGAGAGAATGTGAAGGCAGTACAAGTCTCCTGTGGATTCAACCACACTGGTGCAATACTCGAGTACAAGTGA

Coding sequence (CDS)

ATGAACCTGCCGCAGATTGCTTCTAGGTTCCTAGACAGAAACTTGTTAATCACTACTAGTGTGTACGTCTGTGGCGCCATATTCACGTGGGGCTGGGGAGGTTCTCATGGAACGTTTTCTGTGGATGGTCATTCTTCTGGGGGTCAGCTGGGACATGGAAGTGACGTTGACTATGTGAAACCGACAATGATCGACCTTGGAGAGAATGTGAAGGCAGTACAAGTCTCCTGTGGATTCAACCACACTGGTGCAATACTCGAGTACAAGTGA

Protein sequence

MNLPQIASRFLDRNLLITTSVYVCGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGAILEYK
Homology
BLAST of Spg002293 vs. NCBI nr
Match: XP_038883567.1 (ultraviolet-B receptor UVR8 isoform X1 [Benincasa hispida])

HSP 1 Score: 141.7 bits (356), Expect = 3.0e-30
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0

Query: 25  GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGA 84
           GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGA
Sbjct: 354 GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGA 413

Query: 85  ILEYK 90
           ILEYK
Sbjct: 414 ILEYK 418

BLAST of Spg002293 vs. NCBI nr
Match: XP_038883571.1 (ultraviolet-B receptor UVR8 isoform X5 [Benincasa hispida])

HSP 1 Score: 141.7 bits (356), Expect = 3.0e-30
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0

Query: 25  GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGA 84
           GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGA
Sbjct: 279 GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGA 338

Query: 85  ILEYK 90
           ILEYK
Sbjct: 339 ILEYK 343

BLAST of Spg002293 vs. NCBI nr
Match: XP_022966331.1 (ultraviolet-B receptor UVR8 isoform X1 [Cucurbita maxima])

HSP 1 Score: 139.4 bits (350), Expect = 1.5e-29
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0

Query: 25  GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGA 84
           GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGA
Sbjct: 353 GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGA 412

Query: 85  ILEY 89
           ILEY
Sbjct: 413 ILEY 416

BLAST of Spg002293 vs. NCBI nr
Match: XP_022966332.1 (ultraviolet-B receptor UVR8 isoform X2 [Cucurbita maxima])

HSP 1 Score: 139.4 bits (350), Expect = 1.5e-29
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0

Query: 25  GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGA 84
           GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGA
Sbjct: 352 GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGA 411

Query: 85  ILEY 89
           ILEY
Sbjct: 412 ILEY 415

BLAST of Spg002293 vs. NCBI nr
Match: XP_022925248.1 (ultraviolet-B receptor UVR8 isoform X3 [Cucurbita moschata])

HSP 1 Score: 139.4 bits (350), Expect = 1.5e-29
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0

Query: 25  GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGA 84
           GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGA
Sbjct: 353 GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGA 412

Query: 85  ILEY 89
           ILEY
Sbjct: 413 ILEY 416

BLAST of Spg002293 vs. ExPASy Swiss-Prot
Match: D3ZGQ5 (Serine/threonine-protein kinase Nek8 OS=Rattus norvegicus OX=10116 GN=Nek8 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 9.1e-06
Identity = 30/82 (36.59%), Postives = 41/82 (50.00%), Query Frame = 0

Query: 4   PQIASRFLDRNLLITTSVYVCGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTM 63
           PQ  SRFL+    +T     CG +FT       G     G  S G LGHGS  D  +PT+
Sbjct: 384 PQFVSRFLEGQSGVTIKHVACGDLFT-ACLTDRGIIMTFGSGSNGCLGHGSLTDISQPTI 443

Query: 64  IDLGENVKAVQVSCGFNHTGAI 86
           ++     + VQV+CG +H  A+
Sbjct: 444 VEALLGYEMVQVACGASHVLAL 464

BLAST of Spg002293 vs. ExPASy Swiss-Prot
Match: Q86SG6 (Serine/threonine-protein kinase Nek8 OS=Homo sapiens OX=9606 GN=NEK8 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.0e-05
Identity = 30/82 (36.59%), Postives = 40/82 (48.78%), Query Frame = 0

Query: 4   PQIASRFLDRNLLITTSVYVCGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTM 63
           PQ  SRFL+    +T     CG  FT       G     G  S G LGHGS  D  +PT+
Sbjct: 378 PQFISRFLEGQSGVTIKHVACGDFFT-ACLTDRGIIMTFGSGSNGCLGHGSLTDISQPTI 437

Query: 64  IDLGENVKAVQVSCGFNHTGAI 86
           ++     + VQV+CG +H  A+
Sbjct: 438 VEALLGYEMVQVACGASHVLAL 458

BLAST of Spg002293 vs. ExPASy Swiss-Prot
Match: Q9FN03 (Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana OX=3702 GN=UVR8 PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 6.5e-04
Identity = 21/63 (33.33%), Postives = 33/63 (52.38%), Query Frame = 0

Query: 25  GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGA 84
           G ++ WGW            +  GQ+G G+++D   P  +   ++ K VQVSCG+ HT A
Sbjct: 295 GKLYGWGW------------NKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLA 345

Query: 85  ILE 88
           + E
Sbjct: 355 VTE 345

BLAST of Spg002293 vs. ExPASy TrEMBL
Match: A0A6J1HRS2 (PH, RCC1 and FYVE domains-containing protein 1 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111466019 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 7.1e-30
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0

Query: 25  GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGA 84
           GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGA
Sbjct: 336 GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGA 395

Query: 85  ILEY 89
           ILEY
Sbjct: 396 ILEY 399

BLAST of Spg002293 vs. ExPASy TrEMBL
Match: A0A6J1HMP4 (ultraviolet-B receptor UVR8 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111466019 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 7.1e-30
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0

Query: 25  GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGA 84
           GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGA
Sbjct: 352 GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGA 411

Query: 85  ILEY 89
           ILEY
Sbjct: 412 ILEY 415

BLAST of Spg002293 vs. ExPASy TrEMBL
Match: A0A6J1HP08 (ultraviolet-B receptor UVR8 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466019 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 7.1e-30
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0

Query: 25  GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGA 84
           GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGA
Sbjct: 353 GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGA 412

Query: 85  ILEY 89
           ILEY
Sbjct: 413 ILEY 416

BLAST of Spg002293 vs. ExPASy TrEMBL
Match: A0A6J1EEN4 (ultraviolet-B receptor UVR8 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111432545 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 7.1e-30
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0

Query: 25  GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGA 84
           GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGA
Sbjct: 353 GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGA 412

Query: 85  ILEY 89
           ILEY
Sbjct: 413 ILEY 416

BLAST of Spg002293 vs. ExPASy TrEMBL
Match: A0A5A7TCI0 (Ultraviolet-B receptor UVR8 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G001080 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.1e-29
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 0

Query: 25  GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGA 84
           GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPT I+LGENVKAVQVSCGFNHTGA
Sbjct: 355 GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTKIELGENVKAVQVSCGFNHTGA 414

Query: 85  ILEYK 90
           ILEYK
Sbjct: 415 ILEYK 419

BLAST of Spg002293 vs. TAIR 10
Match: AT5G08710.1 (Regulator of chromosome condensation (RCC1) family protein )

HSP 1 Score: 120.9 bits (302), Expect = 5.1e-28
Identity = 50/62 (80.65%), Postives = 58/62 (93.55%), Query Frame = 0

Query: 27  IFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGAIL 86
           +FTWGWGGSHGTFSVDGHSSGGQLGHGSDVDY +P M+DLG+NV+AV +SCGFNHT A+L
Sbjct: 372 VFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYARPAMVDLGKNVRAVHISCGFNHTAAVL 431

Query: 87  EY 89
           E+
Sbjct: 432 EH 433

BLAST of Spg002293 vs. TAIR 10
Match: AT5G63860.1 (Regulator of chromosome condensation (RCC1) family protein )

HSP 1 Score: 44.7 bits (104), Expect = 4.6e-05
Identity = 21/63 (33.33%), Postives = 33/63 (52.38%), Query Frame = 0

Query: 25  GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGA 84
           G ++ WGW            +  GQ+G G+++D   P  +   ++ K VQVSCG+ HT A
Sbjct: 295 GKLYGWGW------------NKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLA 345

Query: 85  ILE 88
           + E
Sbjct: 355 VTE 345

BLAST of Spg002293 vs. TAIR 10
Match: AT1G65920.1 (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain )

HSP 1 Score: 41.6 bits (96), Expect = 3.9e-04
Identity = 31/91 (34.07%), Postives = 41/91 (45.05%), Query Frame = 0

Query: 3   LPQIASRFLDRNL------LITTSVYVCGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDV 62
           + Q  S+FL R +       +T     CGA  T     S G     G  + G LGHGS  
Sbjct: 375 IEQSGSQFLTRKISDVLGGSLTVLSVACGAWHT-AIVTSSGQLFTYGSGTFGVLGHGSLE 434

Query: 63  DYVKPTMIDLGENVKAVQVSCGFNHTGAILE 88
              KP  ++    +K + VSCG  HT AI+E
Sbjct: 435 SVTKPKEVESLRRMKVISVSCGPWHTAAIVE 464

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038883567.13.0e-30100.00ultraviolet-B receptor UVR8 isoform X1 [Benincasa hispida][more]
XP_038883571.13.0e-30100.00ultraviolet-B receptor UVR8 isoform X5 [Benincasa hispida][more]
XP_022966331.11.5e-29100.00ultraviolet-B receptor UVR8 isoform X1 [Cucurbita maxima][more]
XP_022966332.11.5e-29100.00ultraviolet-B receptor UVR8 isoform X2 [Cucurbita maxima][more]
XP_022925248.11.5e-29100.00ultraviolet-B receptor UVR8 isoform X3 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
D3ZGQ59.1e-0636.59Serine/threonine-protein kinase Nek8 OS=Rattus norvegicus OX=10116 GN=Nek8 PE=1 ... [more]
Q86SG62.0e-0536.59Serine/threonine-protein kinase Nek8 OS=Homo sapiens OX=9606 GN=NEK8 PE=1 SV=1[more]
Q9FN036.5e-0433.33Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana OX=3702 GN=UVR8 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1HRS27.1e-30100.00PH, RCC1 and FYVE domains-containing protein 1 isoform X3 OS=Cucurbita maxima OX... [more]
A0A6J1HMP47.1e-30100.00ultraviolet-B receptor UVR8 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1114660... [more]
A0A6J1HP087.1e-30100.00ultraviolet-B receptor UVR8 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1114660... [more]
A0A6J1EEN47.1e-30100.00ultraviolet-B receptor UVR8 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC11143... [more]
A0A5A7TCI02.1e-2996.92Ultraviolet-B receptor UVR8 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
Match NameE-valueIdentityDescription
AT5G08710.15.1e-2880.65Regulator of chromosome condensation (RCC1) family protein [more]
AT5G63860.14.6e-0533.33Regulator of chromosome condensation (RCC1) family protein [more]
AT1G65920.13.9e-0434.07Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IIGENE3D2.130.10.30coord: 11..88
e-value: 2.2E-11
score: 45.3
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IISUPERFAMILY50985RCC1/BLIP-IIcoord: 19..87
IPR000408Regulator of chromosome condensation, RCC1PFAMPF00415RCC1coord: 43..85
e-value: 1.5E-7
score: 31.9
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 25..88
score: 11.287999
NoneNo IPR availablePANTHERPTHR45622UBIQUITIN-PROTEIN LIGASE E3A-RELATEDcoord: 23..89
NoneNo IPR availablePANTHERPTHR45622:SF21OS11G0545800 PROTEINcoord: 23..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg002293.1Spg002293.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen