Spg002280 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg002280
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSWIM-type domain-containing protein
Locationscaffold1: 31845667 .. 31847365 (-)
RNA-Seq ExpressionSpg002280
SyntenySpg002280
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAGATCAACTAACCCCGCCTTTTACTTTCCTTGCATTTAATTTTTCATATTTATTTTCCCGCCCTTATTTTATGTCTTAATCTTTCATCGATAAACCCCCCTTTTTTGGTTACCTCAAAAACACAAAAGAATTTAGAAATAAACCAATTGTTCCCTGTGATCGACCCCGACCACTACTACTACAAGTTAGCTTTAGGAATCATGAATTATAAATTTATTTGACACGACCCTCGACAAGTCGTCCGTCACGTTTCAAGCAATATATTTTACAAAATCTACGAAAAAACATATACGAGACAAAATTGAAAAGGATCGTTCGATGCAGGTCGATACGCCTTATTTGAGTATGCAACATTTTTTAATATCCTAATATTTGTATAAATCTTCTTTTTCAGGTTAATCTGGTGGACAATGTGCAATTCCAGGTAATATATGGTATCAGTCAACATGATGTTCATTTAACTGCCAGAAGATGCAGTTGTAGAATTTGGGACATTTTGCAGATACCATGTTCTCCTGCATGCACTGTTTTGACTTCAAAGCACTTTCCTATTAAGGAGTATATATCACATTACTACTTGAATATGACTTTGTGTTCAATATACAATGGTTTAATCCATCCATTAGGCAACGAGTCTAGCTGGCATATCCCCGAGGAGGTCAAGAATATTTTAGTTCTCCCTCCCAACGTTAAGCGTTCTTCTGGTAGGCTAAAGAAGATCAGAATCCCCTCACAAATGGAATTAAAAAAATGAGTTAAATGTGGTCGTTGTGGCAGGAGTGGGCATAATAGGAAAACTTGCAAATTTGCACTAACTCAATATTTATCATATATGTTTCAAATGCTTAAGAACATTTATCTTTATTTTTTGTTCAAGTTGTTATTTATTCATGTATTTCCATTAAACTGAAATAGGTTTATATTGAATATACTTACATCAAAACAGTATCCATACGGGACAATCTGCATCCCAACAACATCTTTAGGTTTTTCTTGTTCCATGGAGTAGTCTGTTTTTGTCGTGATTGGCCTTTGTTGAATATCTTCCTATCTTCTACCGTTATCCAATCTCGTGGTTTCTGTTTCAGAGCTATCGCCCTGCAATTAAAACTCAAAAGTTAGGCAATTCAAATAAGGATGTCATATTCCAATTTTCTTTATAACAATACATAGCTCTGAATTTATTGTGATAACCTCATTTTCATTTGCTTTATTAGGTGCTTTTCTGCCACCCATATTCAATATCCTTTGACTCATTCGTCTAATTTCATTCAACCCCCTGTTCTTATTTCTATCCATTCCTTATTATTATTTTTTTTTTTTGTATAATTGGAATATGCCCAGCCCATCAGTAGTTCCCATCAAACATTAACATATATGATTAACATGTAAGAATATATGATGCATTGCCCCATCATTAACTCTAGTTGCCGAACAGGACATGTTGAATGATATATATGGACATTAACTATTCAATGTTCACATTTTATGTATAAAATGCTCCTACCACTACAACAATTAAGGTCTTTCCCGACGCGCATATGCGTCGGGAAAGATCGGAATACGCGTCGGCAAAGGTTCTCCCGACGCGTATTCAGACGTCGGGAGACGCATCGGGAAAAACGTGTCGGCAGAGCCTCTGCCGACGCGTATTTGTCATGCGTCGGCAGAGACCATCTCTGCCGACGCATAA

mRNA sequence

ATGGTTAATCTGGTGGACAATGTGCAATTCCAGATACCATGTTCTCCTGCATGCACTGTTTTGACTTCAAAGCACTTTCCTATTAAGGAGTATATATCACATTACTACTTGAATATGACTTTGTGTTCAATATACAATGGTTTAATCCATCCATTAGGCAACGAGTCTAGCTGGCATATCCCCGAGGAGGTCAAGAATATTTTAGTTCTCCCTCCCAACGTTAAGCGTTCTTCTGGTCTTTCCCGACGCGCATATGCGTCGGGAAAGATCGGAATACGCGTCGGCAAAGGTTCTCCCGACGCGTATTCAGACGTCGGGAGACGCATCGGGAAAAACGTGTCGGCAGAGCCTCTGCCGACGCGTATTTGTCATGCGTCGGCAGAGACCATCTCTGCCGACGCATAA

Coding sequence (CDS)

ATGGTTAATCTGGTGGACAATGTGCAATTCCAGATACCATGTTCTCCTGCATGCACTGTTTTGACTTCAAAGCACTTTCCTATTAAGGAGTATATATCACATTACTACTTGAATATGACTTTGTGTTCAATATACAATGGTTTAATCCATCCATTAGGCAACGAGTCTAGCTGGCATATCCCCGAGGAGGTCAAGAATATTTTAGTTCTCCCTCCCAACGTTAAGCGTTCTTCTGGTCTTTCCCGACGCGCATATGCGTCGGGAAAGATCGGAATACGCGTCGGCAAAGGTTCTCCCGACGCGTATTCAGACGTCGGGAGACGCATCGGGAAAAACGTGTCGGCAGAGCCTCTGCCGACGCGTATTTGTCATGCGTCGGCAGAGACCATCTCTGCCGACGCATAA

Protein sequence

MVNLVDNVQFQIPCSPACTVLTSKHFPIKEYISHYYLNMTLCSIYNGLIHPLGNESSWHIPEEVKNILVLPPNVKRSSGLSRRAYASGKIGIRVGKGSPDAYSDVGRRIGKNVSAEPLPTRICHASAETISADA
Homology
BLAST of Spg002280 vs. NCBI nr
Match: XP_022134813.1 (uncharacterized protein LOC111006994 [Momordica charantia])

HSP 1 Score: 77.4 bits (189), Expect = 1.0e-10
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 0

Query: 24  KHFPIKEYISHYYLNMTLCSIYNGLIHPLGNESSWHIPEEVKNILVLPPNVKRSSGLSRR 83
           KH P K Y+S YY N  L S Y+G IHPLG++SSW+IPE+VK I +LPPNVKR +G  ++
Sbjct: 556 KHLPTKGYVSLYYSNNYLRSTYSGSIHPLGHQSSWNIPEDVKIIKMLPPNVKRPAGRPKK 615

BLAST of Spg002280 vs. NCBI nr
Match: XP_022155207.1 (uncharacterized protein LOC111022347 [Momordica charantia])

HSP 1 Score: 74.3 bits (181), Expect = 8.8e-10
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 0

Query: 24  KHFPIKEYISHYYLNMTLCSIYNGLIHPLGNESSWHIPEEVKNILVLPPNVKRSSGLSRR 83
           KH P K Y+S YY N  L S Y+G IHPLG++SSW+IPE+VK I +L PNVKR +G  ++
Sbjct: 483 KHLPKKGYVSSYYSNNYLSSTYSGSIHPLGHQSSWNIPEDVKIIKMLLPNVKRPAGRPKK 542

BLAST of Spg002280 vs. NCBI nr
Match: XP_030483642.1 (uncharacterized protein LOC115700217 [Cannabis sativa])

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-08
Identity = 40/106 (37.74%), Postives = 57/106 (53.77%), Query Frame = 0

Query: 11  QIPCSPACTVLTSKHFPIKEYISHYYLNMTLCSIYNGLIHPLGNESSWHIPEEVKNILVL 70
           ++PCS A  VL  ++F   +Y S+YY      S Y   I PLG  +SW+IPE+VKNI V 
Sbjct: 184 EMPCSHAMAVLAKRNFSCYKYCSYYYTKEAFMSTYEDSILPLGEATSWNIPEDVKNITVH 243

Query: 71  PPNVKRSSGLSRRAYASG----KIGIRVGKGSPDAYSDVGRRIGKN 113
           PP  KR +G  ++    G    K  ++ GK +   ++   RR  KN
Sbjct: 244 PPKYKRPAGRPKKDRYKGAMDTKTKVKCGKCNQKGHN---RRSCKN 286

BLAST of Spg002280 vs. NCBI nr
Match: XP_030497480.1 (uncharacterized protein LOC115713133 [Cannabis sativa])

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-08
Identity = 40/106 (37.74%), Postives = 57/106 (53.77%), Query Frame = 0

Query: 11  QIPCSPACTVLTSKHFPIKEYISHYYLNMTLCSIYNGLIHPLGNESSWHIPEEVKNILVL 70
           ++PCS A  VL  ++F   +Y S+YY      S Y   I PLG  +SW+IPE+VKNI V 
Sbjct: 401 EMPCSHAMAVLAKRNFSCYKYCSYYYTKEAFMSTYEDSILPLGEATSWNIPEDVKNITVH 460

Query: 71  PPNVKRSSGLSRRAYASG----KIGIRVGKGSPDAYSDVGRRIGKN 113
           PP  KR +G  ++    G    K  ++ GK +   ++   RR  KN
Sbjct: 461 PPKYKRPAGRPKKDRYKGAMDTKTKVKCGKCNQKGHN---RRSCKN 503

BLAST of Spg002280 vs. NCBI nr
Match: XP_030487349.1 (uncharacterized protein LOC115704274 [Cannabis sativa])

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-08
Identity = 40/106 (37.74%), Postives = 57/106 (53.77%), Query Frame = 0

Query: 11  QIPCSPACTVLTSKHFPIKEYISHYYLNMTLCSIYNGLIHPLGNESSWHIPEEVKNILVL 70
           ++PCS A  VL  ++F   +Y S+YY      S Y   I PLG  +SW+IPE+VKNI V 
Sbjct: 261 EMPCSHAMAVLAKRNFSCYKYCSYYYTKEAFMSTYEDSILPLGEATSWNIPEDVKNITVH 320

Query: 71  PPNVKRSSGLSRRAYASG----KIGIRVGKGSPDAYSDVGRRIGKN 113
           PP  KR +G  ++    G    K  ++ GK +   ++   RR  KN
Sbjct: 321 PPKYKRPAGRPKKDRYKGAMDTKTKVKCGKCNQKGHN---RRSCKN 363

BLAST of Spg002280 vs. ExPASy TrEMBL
Match: A0A6J1C328 (uncharacterized protein LOC111006994 OS=Momordica charantia OX=3673 GN=LOC111006994 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 5.0e-11
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 0

Query: 24  KHFPIKEYISHYYLNMTLCSIYNGLIHPLGNESSWHIPEEVKNILVLPPNVKRSSGLSRR 83
           KH P K Y+S YY N  L S Y+G IHPLG++SSW+IPE+VK I +LPPNVKR +G  ++
Sbjct: 556 KHLPTKGYVSLYYSNNYLRSTYSGSIHPLGHQSSWNIPEDVKIIKMLPPNVKRPAGRPKK 615

BLAST of Spg002280 vs. ExPASy TrEMBL
Match: A0A6J1DNQ8 (uncharacterized protein LOC111022347 OS=Momordica charantia OX=3673 GN=LOC111022347 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.2e-10
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 0

Query: 24  KHFPIKEYISHYYLNMTLCSIYNGLIHPLGNESSWHIPEEVKNILVLPPNVKRSSGLSRR 83
           KH P K Y+S YY N  L S Y+G IHPLG++SSW+IPE+VK I +L PNVKR +G  ++
Sbjct: 483 KHLPKKGYVSSYYSNNYLSSTYSGSIHPLGHQSSWNIPEDVKIIKMLLPNVKRPAGRPKK 542

BLAST of Spg002280 vs. ExPASy TrEMBL
Match: A0A5D3C2C0 (Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001990 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.4e-08
Identity = 32/82 (39.02%), Postives = 54/82 (65.85%), Query Frame = 0

Query: 2   VNLVDNVQFQIPCSPACTVLTSKHFPIKEYISHYYLNMTLCSIYNGLIHPLGNESSWHIP 61
           VN V+N+++Q+    +  V+   + P K ++S  YLN TL S Y  +I+PLG+   W IP
Sbjct: 202 VNQVNNLKYQVINGTSQYVI---YLPTKSHVSPLYLNSTLSSRYRPVINPLGDHCQWQIP 261

Query: 62  EEVKNILVLPPNVKRSSGLSRR 84
           +++ +I++LPPNVKR+ G  ++
Sbjct: 262 DDIMSIVILPPNVKRAVGRPKK 280

BLAST of Spg002280 vs. ExPASy TrEMBL
Match: U5DAI0 (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00832p00002090 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.2e-07
Identity = 27/69 (39.13%), Postives = 42/69 (60.87%), Query Frame = 0

Query: 11  QIPCSPACTVLTSKHFPIKEYISHYYLNMTLCSIYNGLIHPLGNESSWHIPEEVKNILVL 70
           ++PC  A  V+   +     Y S YY      + Y+G ++P+G++S W +PEEVKNI+VL
Sbjct: 391 EMPCGHAVAVMREMNMDPYTYCSDYYTKKNWLATYSGTVYPIGHQSEWEVPEEVKNIIVL 450

Query: 71  PPNVKRSSG 80
           PP+ +  SG
Sbjct: 451 PPHERVKSG 459

BLAST of Spg002280 vs. ExPASy TrEMBL
Match: A0A803R5Z4 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.5e-07
Identity = 28/73 (38.36%), Postives = 46/73 (63.01%), Query Frame = 0

Query: 11  QIPCSPACTVLTSKHFPIKEYISHYYLNMTLCSIYNGLIHPLGNESSWHIPEEVKNILVL 70
           ++PCS A  VL+ ++    +Y S+YY      + Y   I PLG  +SW+IP+ ++NI+VL
Sbjct: 42  EMPCSHAMAVLSKRNLSCYKYCSYYYTKEAFMATYEDSILPLGEATSWNIPDLIRNIVVL 101

Query: 71  PPNVKRSSGLSRR 84
           PP  KR++G  ++
Sbjct: 102 PPKHKRAAGRPKK 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022134813.11.0e-1058.33uncharacterized protein LOC111006994 [Momordica charantia][more]
XP_022155207.18.8e-1056.67uncharacterized protein LOC111022347 [Momordica charantia][more]
XP_030483642.11.3e-0837.74uncharacterized protein LOC115700217 [Cannabis sativa][more]
XP_030497480.11.3e-0837.74uncharacterized protein LOC115713133 [Cannabis sativa][more]
XP_030487349.11.3e-0837.74uncharacterized protein LOC115704274 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1C3285.0e-1158.33uncharacterized protein LOC111006994 OS=Momordica charantia OX=3673 GN=LOC111006... [more]
A0A6J1DNQ84.2e-1056.67uncharacterized protein LOC111022347 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A5D3C2C01.4e-0839.02Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
U5DAI01.2e-0739.13Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00832p00002090... [more]
A0A803R5Z41.5e-0738.36Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg002280.1Spg002280.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding