Spg002262 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg002262
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	ribosome production factor 1-like
Location	scaffold1: 32854203 .. 32858962 (+)
RNA-Seq Expression	Spg002262
Synteny	Spg002262

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCTGGTCACGATTGGGTTTGGGTCTCGGTTTATCGCCGATTTGGGTCTCGTTTTCTCGTCGGTGTGAGTCCCGGAGTGTAGCGGCTGTGGGTCTCTGCTTAGAGACACGTGAGTCTCGGTTCAGGGACTGTTAAAGTCGCCGGCGTGGGTCTTCGCAGCAGTCGTCGTGGGTCTTGATTCGGAGACGATTTCACGCTACGTTGGGTCTTTGCTCTGCGCCGTTGTGAGTCTCGGGTTTGTTCAGCCGTGGGTTTCATTACAGGCTGTGGGTATCTATCTCAGCCTTGATTGAAGCGTGTTTGACAGAGTTCTTCGATTGGTCACAAGTGGTTTAACTTGTGTTGTGGTTTCTCTGTGGGCATTCTCTTGAAGCTCAAATCGGTCAAGATTTGAGGTACTTTACATTGGGTAAATTTGTGTCATTATTGTATTCTGATGCTCCTTAATAGAACTCTCATAAACTGGTTCTCAAAGTGGAGGTAGACCGAAAAGTTGAACCACTATATATCCTTGTGTTCTTGATTTATTTGCTGCTGCAAATTTGCGTTCTGTTTGGCATATTGAGTTCTAAAATTCTACACATATTTTTGTTCTCTTTCACCAATTTTTGATTTATGTTACAGGTTGATCAAGGAGTATAGATGGGAGAGGAGAAGAAGAAGAGCAGGGATATAATCCCATCAATGATAAAGAACAAGGAAAAGAGGGCAGAAGTGCACGCCAACCTCAAGAACCAGAAGAGGCTTGAGAAACGCAAGAGGGCCAAGGCTCGTGATGCTGCTGAGAAGCAAGCTCTTGAACTTGGAGAAGAAGTATTGCATCTCTACTCATCTGCTTTGTTTATCTTCTATCTCAGAGATTCTGACTCTTTTATTTATTCTTTCTGTAGCCTCCTCCTAGGATGGTTCCTCGCACCATTGAGAACACAAGGGAGGTTGATGAGACGGTTTGCAAACCTGATGATGAAGAGGTTCTTCTTTGTCTTCTTCTTCTTTTTAACTCTTAGTATATGACATTTTTGTACTTTTTGTTTAAATATAATATATACATGTGTTTATTTGTAATTCCTTTCATTTAGTGTACACATTTGTAATATGTCCAGTTTTGATTCTCTGCAGCTATTTGCTGGAAATGATGCCGATGAATTTAGTTCCATCATAAAACGTGAAGCTTTGCCAAAAGTTTTAATTACTACTTGTCGTTTTAATTCTACTGTAAGATTCTTCATTATCACCAGTTAAACAGTAATTTTGTTTTTAGCAACCTGCACTGAATGGAAAATCGATCTAAAGCATTCACCATTCGATAACTTGGTACCTTATATTTAAGTCTTCTGCCTTTATGTAACTCACTATTTGCATTTTGCAGATTGGACCTGCTTTTATTTCAGAGTTGCTTTCAGTGATACCAAATGCACATTACTACAAGAGAGGAACTAACGATTTGAAGAAGGTTCCACTGATATTTGTATTTTCTAATAAACACACGGAAGGAAAAAGAAAAATTAGAAAATTAAGAGAAAAACAAGAATAGTATAGAAAAATGATCTGTAGCTTGTTATTCTGGCAATAACTTCGTGTGTGTGTGTTTTTTTTCTCTCTTGCTTGTAGATTATAGAATATGCAAATGCCAAGGACTTCACTTCTTTGATGGTTGTTCATACGAGTAGGAGAAAATTGGGTAAGTTGATAGTCTATAAACCTTGTTTTTCCTTCTTGCGTGTCAATTTGTCTCTTGCAAACTTGTTTTCTCTTTCTCTTTAATATTTTGTTTACTTAGCTGTTTAACATTAATGTTTTGAAATTCTTTTAGATGGCCTTCTAATTATTGGCTTACCTGAGGGACCTACTGCCCATTTTAAGATATCAAATGTTGTCTTACGTAAGGATATTAAGGTATGTGTTTCACGTCAATGAAATAGTATGCTCCACTTGTTTCTATTTATGAATTGTTGTGTTCTATGTTAACTACTGAATTTTTTAGAGGAATAAATTTTCCATGAAACTTTAACCATTTTATCTTTTCTTGCTTGTAGAATCATGGAAATCCGACCAGCCACGAGCCAGAGCTTGTGTTGACTAACTTCACAACACGCCTTGGTCTGCGTGTTGGAAGGTTGCTTCTGTACCTAAATTCCTTTATCTGAATATACTGCCTCTTGTGAAGACTGCATTTCATATTTAGAATTATTTTTACTTTCTGTTTATTACACTTATATGATTATGATATCTCTACTCTCAAATCTCAAGTTTTTTCTTAATGCATTAACCTTTATTATTGCCTTTTTTCTTTAGATTAATACAGTCACTCTTCCCTCAAGATCCTAATTTTCGTGGTCGACGAGTTGCAACTTTTCACAACCAACGGGATTTTATTTTCTTCAGGCATCACCGGTATAATACCATATCTGCTTCAAATATATCTTTCTTTATGCTTGAGAGTTTGGATTATGATGAATTTGTGTCTTTTGTCTTCTCAGGTACATTTTTGAAAGCAAGGAAAATAAAAAAGAGGCCGACTCAAAAAGTAAGTCCAAGGATACCAAGGGTGAGAAAGTTTCTCAGCAGAAAGTAATTGCACGGCTTCAGGTCAATATATCTTCCCTTCCACCTCACATAAAATGATTCTTTATTGTGATTTCTATGGTGGTTCCTTTTTTAATTAGGAGACTTCAATATTCGTTTACTTTTTTTTGTTATCTTGTCTCTCTTATTACAACTTGGTTCTTTTTTCCTCTTCTAATTTTTTTTGGGGGTGGTGATTAACAGTAATTCATTCATAATCCAGGAAGAGTACATAGGGGACTGGGAAAATTTAGAAACGTTGAGTGGGTTTCGTGAGAAACAGTATGGAAGCCAAAATAATTGTCTGTACTCTTGTTTTACATTGTCATTAATCCTCACACTTCATCAGTAGTTTTTCCATCGGCTTTTGTAATCAATTTGGAAATTGACTTATGGGAGAACATACCTAAGTTTATGATTTCACTATACTCCTGCAACATCACATTTTGGCCTTTTGTAGATAATCATGTTTAGTATTCCCTTGAACTCAATCTCTCTTCTCCATCGATAAAATAAACAATTTGCTGCTGATCCAAGAGGGTTGCAAAGCAAGCTCACCTCTTAAAGAGTGACCAAAACTGCCATGTTATTCTGTGTCAAGTGTGATTTTTTTGTGTTTAGATTTGCATGAGAATGTGATTAGGAGAATCTAAGGCCTGTTCACATTTCTTGTTTCTTGTGTTCTCGTTTCCCCATTTTTAATAAAGAGAAACAAAATTGTGTTGGGTAATTGGTTTTTTGTTTCTCGATTTTTTTTTTTTTGATTGAAAAAGTGTTTGACAATCATTTCTTGTTTCTTGTTCTCTGAAATTTAAATAAAAAAATCTAAAAGTTGTGTATGAAAATGAATTTTTAAAATTAAATTTCCAAAATTTTTATGTGATATTTATTTTTAGATATCATTTATTTAAGAAAAAATGATAAATAATGCTTTTACAAGCGTTGAAAAAAATTAGAAACAAGAAACAAGAACCGAAAAATTTGATTGTTGTTTCCAAAATTTTTGACAAATGAGAAACAAGAAACCTAAATAGATACCAAATGCTTATGTTTTTAAAAATCTATGAACAAAATATCAGAAATAGAAACATTACCAAATGACCTCTAGACATGAGAAGTAATTTGAGCAAAAACAGACTAAATAATAAGAGGGAAGAATATTAGTGCAGTAACAACTGATTCTGAGACTTGATTTTCAGGAATGTGGTCCCCGATTCACAATGAAATTGATCAGTTTGCAGCACGGAACTTTCGATTCAAAAGGCGGGGAATATGAGTGGGTTCATAAGGTAAGTCTAAATCTCCCTTATCCGTTACGATCTCGATCCAAAATGCATGAAATACATACTATTAGATCATATGATCCGTCCTGTTTGTCTAATTTGTTTTTTCCCACTTCCTCTGAATTTCAGCCTGAAATGGATACAAGCCGCAGAAGATTTTTCTTGTGACATTCTCAATGGAGTTTATTGCTTTTATTTCTGGGGAGTAAAAGTTGTTCGACTCAGGTTTATATCGTAAGTAGACTTCAATAACTTTTTTTTGGTTCTTTTTTCTTTCTTCTTTCTTTATAGGAAACCAAACACTCACAAAAAAAGCAGGTCAGATGAGATAACCATCACGAGCTAAGGGGATAACATAAAGGATTCTCAATTGGCAAAGATTGGTTATTATTGACCTGTTGGGTGGCTGGTTCTTTTGTTTTTAGTTGACTTATTACTTGTTATCTACCTGCCAAATCATTTTTAAAATCCTAACCAAATTTACGAGAAAACAAGCATTTTCGTAGTGTCATTTATATAACTTGTTAAAATTCTATGAGTTTTCTGACAACTAAATAAAGAATGAAAACATTTTCTAATGGATGTCCTCGTGATTGTGCAGGAAGGAGCGTCGATCAAATTCGAGTCTCTTTTTTGGTCTGCTTGTATGTTTTAGAAGTTCATTTATTTTTCACTATTCAAAATTTTGTAGTGCATTTTGTAACCATTTGGAAATGATTTCTTGTTGCTGACAACTCAGAAGAAAAAGCCATATGTTCATTTTCTCTTATCTCAGGGGTTTACAAAGGGCTAAAGCTTCACAAACTTGGAGAATGCAAATTGGCATGTTGAGGGTTTAGTTTAATAGTCTTCTAAACTTGATTTTGTATTTATATTTATAGGTATTTGATCTACCGTACACAATTTAA

mRNA sequence

ATGCCGCTGGTCACGATTGGGTTTGGGTCTCGGTTTATCGCCGATTTGGGTCTCGGACTGTTAAAGTCGCCGGCGTGGGTCTTCGCAGCAGTCGTCGTGGGTCTTGATTCGGAGACGATTTCACGCTACGTTGGGTCTTTGCTCTGCGCCGTTGTGAGTCTCGGGTTTGTTCAGCCGTGGGTTTCATTACAGGCTATGGGAGAGGAGAAGAAGAAGAGCAGGGATATAATCCCATCAATGATAAAGAACAAGGAAAAGAGGGCAGAAGTGCACGCCAACCTCAAGAACCAGAAGAGGCTTGAGAAACGCAAGAGGGCCAAGGCTCGTGATGCTGCTGAGAAGCAAGCTCTTGAACTTGGAGAAGAACCTCCTCCTAGGATGGTTCCTCGCACCATTGAGAACACAAGGGAGGTTGATGAGACGGTTTGCAAACCTGATGATGAAGAGCTATTTGCTGGAAATGATGCCGATGAATTTAGTTCCATCATAAAACGTGAAGCTTTGCCAAAAGTTTTAATTACTACTTGTCGTTTTAATTCTACTATTGGACCTGCTTTTATTTCAGAGTTGCTTTCAGTGATACCAAATGCACATTACTACAAGAGAGGAACTAACGATTTGAAGAAGATTATAGAATATGCAAATGCCAAGGACTTCACTTCTTTGATGGTTGTTCATACGAGTAGGAGAAAATTGGATGGCCTTCTAATTATTGGCTTACCTGAGGGACCTACTGCCCATTTTAAGATATCAAATGTTGTCTTACGTAAGGATATTAAGAATCATGGAAATCCGACCAGCCACGAGCCAGAGCTTGTGTTGACTAACTTCACAACACGCCTTGGTCTGCGTGTTGGAAGGTACATTTTTGAAAGCAAGGAAAATAAAAAAGAGGCCGACTCAAAAAGTAAGTCCAAGGATACCAAGGGTGAGAAAGTTTCTCAGCAGAAAGTAATTGCACGGCTTCAGGAATGTGGTCCCCGATTCACAATGAAATTGATCAGTTTGCAGCACGGAACTTTCGATTCAAAAGGCGGGGAATATGAGTGGGTTCATAAGGTAAGTCTAAATCTCCCTTATCCCCTGAAATGGATACAAGCCGCAGAAGATTTTTCTTGTGACATTCTCAATGGAGTTTATTGCTTTTATTTCTGGGGAGTAAAAGTTGTTCGACTCAGGTTTATATCGAAGGAGCGTCGATCAAATTCGAGTCTCTTTTTTGGTCTGCTTGTATTTGATCTACCGTACACAATTTAA

Coding sequence (CDS)

ATGCCGCTGGTCACGATTGGGTTTGGGTCTCGGTTTATCGCCGATTTGGGTCTCGGACTGTTAAAGTCGCCGGCGTGGGTCTTCGCAGCAGTCGTCGTGGGTCTTGATTCGGAGACGATTTCACGCTACGTTGGGTCTTTGCTCTGCGCCGTTGTGAGTCTCGGGTTTGTTCAGCCGTGGGTTTCATTACAGGCTATGGGAGAGGAGAAGAAGAAGAGCAGGGATATAATCCCATCAATGATAAAGAACAAGGAAAAGAGGGCAGAAGTGCACGCCAACCTCAAGAACCAGAAGAGGCTTGAGAAACGCAAGAGGGCCAAGGCTCGTGATGCTGCTGAGAAGCAAGCTCTTGAACTTGGAGAAGAACCTCCTCCTAGGATGGTTCCTCGCACCATTGAGAACACAAGGGAGGTTGATGAGACGGTTTGCAAACCTGATGATGAAGAGCTATTTGCTGGAAATGATGCCGATGAATTTAGTTCCATCATAAAACGTGAAGCTTTGCCAAAAGTTTTAATTACTACTTGTCGTTTTAATTCTACTATTGGACCTGCTTTTATTTCAGAGTTGCTTTCAGTGATACCAAATGCACATTACTACAAGAGAGGAACTAACGATTTGAAGAAGATTATAGAATATGCAAATGCCAAGGACTTCACTTCTTTGATGGTTGTTCATACGAGTAGGAGAAAATTGGATGGCCTTCTAATTATTGGCTTACCTGAGGGACCTACTGCCCATTTTAAGATATCAAATGTTGTCTTACGTAAGGATATTAAGAATCATGGAAATCCGACCAGCCACGAGCCAGAGCTTGTGTTGACTAACTTCACAACACGCCTTGGTCTGCGTGTTGGAAGGTACATTTTTGAAAGCAAGGAAAATAAAAAAGAGGCCGACTCAAAAAGTAAGTCCAAGGATACCAAGGGTGAGAAAGTTTCTCAGCAGAAAGTAATTGCACGGCTTCAGGAATGTGGTCCCCGATTCACAATGAAATTGATCAGTTTGCAGCACGGAACTTTCGATTCAAAAGGCGGGGAATATGAGTGGGTTCATAAGGTAAGTCTAAATCTCCCTTATCCCCTGAAATGGATACAAGCCGCAGAAGATTTTTCTTGTGACATTCTCAATGGAGTTTATTGCTTTTATTTCTGGGGAGTAAAAGTTGTTCGACTCAGGTTTATATCGAAGGAGCGTCGATCAAATTCGAGTCTCTTTTTTGGTCTGCTTGTATTTGATCTACCGTACACAATTTAA

Protein sequence

MPLVTIGFGSRFIADLGLGLLKSPAWVFAAVVVGLDSETISRYVGSLLCAVVSLGFVQPWVSLQAMGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVGRYIFESKENKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKVSLNLPYPLKWIQAAEDFSCDILNGVYCFYFWGVKVVRLRFISKERRSNSSLFFGLLVFDLPYTI

Homology

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BLAST of Spg002262 vs. NCBI nr
Match: XP_022155906.1 (ribosome production factor 1-like [Momordica charantia])

HSP 1 Score: 524.2 bits (1349), Expect = 1.0e-144
Identity = 273/325 (84.00%), Postives = 281/325 (86.46%), Query Frame = 0


Query: 66  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPP 125
           MGEEKK  RDIIPSMIKNKEKR EVHANLK QK+LEKRKRAKARDA+EKQALELGEEPPP
Sbjct: 1   MGEEKKNKRDIIPSMIKNKEKRKEVHANLKQQKKLEKRKRAKARDASEKQALELGEEPPP 60

Query: 126 RMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPA 185
           RM+PRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR  LPKVLITTCRFNS+IGP+
Sbjct: 61  RMIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRHTLPKVLITTCRFNSSIGPS 120

Query: 186 FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT 245
           FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT
Sbjct: 121 FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT 180

Query: 246 AHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG------------------- 305
           AHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG                   
Sbjct: 181 AHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVV 240

Query: 306 --------------RYIFESKENKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMK 358
                         RYIF+SKENKKEADSKS SKD KGEKV QQKVIARLQECGPRFTMK
Sbjct: 241 TFHNQRDFVFFRHHRYIFDSKENKKEADSKSNSKDAKGEKVPQQKVIARLQECGPRFTMK 300

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BLAST of Spg002262 vs. NCBI nr
Match: XP_022156150.1 (ribosome production factor 1-like [Momordica charantia] >XP_022156151.1 ribosome production factor 1-like [Momordica charantia])

HSP 1 Score: 524.2 bits (1349), Expect = 1.0e-144
Identity = 273/325 (84.00%), Postives = 281/325 (86.46%), Query Frame = 0


Query: 66  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPP 125
           MGEEKK  RDIIPSMIKNKEKR EVHANLK QK+LEKRKRAKARDA+EKQALELGEEPPP
Sbjct: 1   MGEEKKNKRDIIPSMIKNKEKRKEVHANLKQQKKLEKRKRAKARDASEKQALELGEEPPP 60

Query: 126 RMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPA 185
           RM+PRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR  LPKVLITTCRFNSTIGP+
Sbjct: 61  RMIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRHTLPKVLITTCRFNSTIGPS 120

Query: 186 FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT 245
           FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT
Sbjct: 121 FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT 180

Query: 246 AHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG------------------- 305
           AHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG                   
Sbjct: 181 AHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVV 240

Query: 306 --------------RYIFESKENKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMK 358
                         RYIF+SKENKKEADSKS SKD KGEKV +QKVIARLQECGPRFTMK
Sbjct: 241 TFHNQRDFIFFRHHRYIFDSKENKKEADSKSNSKDAKGEKVPKQKVIARLQECGPRFTMK 300

[Close]

BLAST of Spg002262 vs. NCBI nr
Match: XP_038906205.1 (ribosome production factor 1 [Benincasa hispida])

HSP 1 Score: 518.1 bits (1333), Expect = 7.2e-143
Identity = 273/325 (84.00%), Postives = 281/325 (86.46%), Query Frame = 0


Query: 66  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPP 125
           MGEE  K+R IIPSMIKNKEKRAEVHANLKNQK+LEKRKRAKARDAAEKQALELGEE PP
Sbjct: 1   MGEE-NKNRGIIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEELPP 60

Query: 126 RMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPA 185
           R +PRTIENTREVDET+CKPDDEELFAGNDADEFSSIIKRE LPKVLITTCRFNSTIGP 
Sbjct: 61  RKIPRTIENTREVDETLCKPDDEELFAGNDADEFSSIIKREILPKVLITTCRFNSTIGPT 120

Query: 186 FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT 245
           FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT
Sbjct: 121 FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT 180

Query: 246 AHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG------------------- 305
           AHFKISNVVLRKDIKNHGNPTSH+PELVLTNFTTRLGLR+G                   
Sbjct: 181 AHFKISNVVLRKDIKNHGNPTSHQPELVLTNFTTRLGLRIGRLIQALFPQDPNFRGRRVV 240

Query: 306 --------------RYIFESKENKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMK 358
                         RYIFESKENKKEADSK KSKDTKGEKV QQKVIARLQECGPRFTMK
Sbjct: 241 TFHNQRDFIFFRHHRYIFESKENKKEADSKKKSKDTKGEKVPQQKVIARLQECGPRFTMK 300

[Close]

BLAST of Spg002262 vs. NCBI nr
Match: XP_008443155.1 (PREDICTED: ribosome production factor 1 isoform X1 [Cucumis melo] >XP_008443156.1 PREDICTED: ribosome production factor 1 isoform X1 [Cucumis melo] >XP_016899701.1 PREDICTED: ribosome production factor 1 isoform X1 [Cucumis melo] >KAA0053947.1 ribosome production factor 1 isoform X1 [Cucumis melo var. makuwa] >TYK25457.1 ribosome production factor 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 517.3 bits (1331), Expect = 1.2e-142
Identity = 273/325 (84.00%), Postives = 282/325 (86.77%), Query Frame = 0


Query: 66  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPP 125
           MGEE KK++ IIPSMIKNKEKRAEVHANLK+QK+LEKRKRAKARDAAEKQALELGEE PP
Sbjct: 1   MGEE-KKNKGIIPSMIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPP 60

Query: 126 RMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPA 185
           R +PRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR+ LPKVLITTCRFNSTIGPA
Sbjct: 61  RKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPA 120

Query: 186 FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT 245
           FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT
Sbjct: 121 FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT 180

Query: 246 AHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG------------------- 305
           AHFKISNVVLRKDIKNHGNPT H+PELVLTNFTTRLGLRVG                   
Sbjct: 181 AHFKISNVVLRKDIKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVV 240

Query: 306 --------------RYIFESKENKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMK 358
                         RYIFESKENKKEADSK KSKDTKGEKV QQKVIARLQECGPRFTMK
Sbjct: 241 TFHNQRDFIFFRHHRYIFESKENKKEADSKKKSKDTKGEKVPQQKVIARLQECGPRFTMK 300

[Close]

BLAST of Spg002262 vs. NCBI nr
Match: XP_031737500.1 (ribosome production factor 1 [Cucumis sativus] >KGN59366.1 hypothetical protein Csa_002461 [Cucumis sativus])

HSP 1 Score: 508.8 bits (1309), Expect = 4.3e-140
Identity = 267/325 (82.15%), Postives = 280/325 (86.15%), Query Frame = 0


Query: 66  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPP 125
           MGEE KK++ I+PS IKNKEKRAEVHANLK+QK+LEKRKRAKARDAAEKQALELGEE PP
Sbjct: 1   MGEE-KKNKVIVPSTIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPP 60

Query: 126 RMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPA 185
           R +PRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR+ LPK+LITTCRFNSTIGPA
Sbjct: 61  RKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKILITTCRFNSTIGPA 120

Query: 186 FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT 245
           FISELLSVIPNAHYYKRGTNDLKKI+EYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT
Sbjct: 121 FISELLSVIPNAHYYKRGTNDLKKIVEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT 180

Query: 246 AHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG------------------- 305
           AHFKISNVVLRK+IKNHGNPT H+PELVLTNFTTRLGLRVG                   
Sbjct: 181 AHFKISNVVLRKEIKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVV 240

Query: 306 --------------RYIFESKENKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMK 358
                         RYIFESKENKKEADSK KSK TKGEKV QQKVIARLQECGPRFTMK
Sbjct: 241 TFHNQRDFIFFRHHRYIFESKENKKEADSKKKSKGTKGEKVPQQKVIARLQECGPRFTMK 300

[Close]

BLAST of Spg002262 vs. ExPASy Swiss-Prot
Match: Q8AVP1 (Ribosome production factor 1 OS=Xenopus laevis OX=8355 GN=rpf1 PE=2 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.9e-50
Identity = 128/291 (43.99%), Postives = 173/291 (59.45%), Query Frame = 0


Query: 79  SMIKNKEKRAEVHANLKNQKRLEK----RKRAKARDAAEKQALELGEEPPPRMVPRTIEN 138
           S IKNK++R  +   LK +KR EK    +KR K R+A       LG++ PP+ VP+TIEN
Sbjct: 49  SEIKNKQRRQFMFIKLKQEKRKEKLILRKKRKKEREA-------LGDKAPPKPVPKTIEN 108

Query: 139 TREVDETVCKPDDEELFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVI 198
            R  DET   P DEE+      DEF+    ++  PK+LITT          F  +L S+I
Sbjct: 109 QRVYDETTVDPADEEVALDEATDEFAPYFNKQTTPKILITTSDRPRGRSVRFTEQLSSII 168

Query: 199 PNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVV 258
           PN+  Y R    LKKII    ++D+T L+V++  R+  +GL++  LP+GPTAHFKISNV 
Sbjct: 169 PNSDVYYRRGLALKKIIPQCVSRDYTDLLVINEDRKVPNGLVLCHLPDGPTAHFKISNVR 228

Query: 259 LRKDIKNHG-NPTSHEPELVLTNFTTRLGLRVGR-----YIFESKENKKEADSKSKSKDT 318
           LRK++K  G  PT H+PE++L NFTTRLG  +GR     Y  +     ++  +    +D 
Sbjct: 229 LRKEMKRKGKEPTEHKPEVILNNFTTRLGHSIGRMFASLYPHDPHFVGRQVATFHNQRDY 288

Query: 319 KGEKV------SQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHK 354
              +       S++KV   +QE GPRFT+KL SLQ GTFDSK GEYEWVHK
Sbjct: 289 IFFRYHRYLFKSEKKV--GIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHK 330

[Close]

BLAST of Spg002262 vs. ExPASy Swiss-Prot
Match: Q5R631 (Ribosome production factor 1 OS=Pongo abelii OX=9601 GN=RPF1 PE=2 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 7.4e-50
Identity = 127/288 (44.10%), Postives = 173/288 (60.07%), Query Frame = 0


Query: 79  SMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREV 138
           S IKNKE+R  +    K Q+R EK     A+   +K+   LG++ PP+ VP+TI+N R  
Sbjct: 55  SEIKNKERRHLMFTRWKQQQRKEK---LAAKKKLKKEREALGDKAPPKPVPKTIDNQRVY 114

Query: 139 DETVCKPDDEELFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVIPNAH 198
           DET   P+DEE+      DEF+S   ++  PK+LITT             +L +VIPN+H
Sbjct: 115 DETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSH 174

Query: 199 YYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKD 258
            Y R    LKKII    A+DFT L+V++  R+  +GL++  LP GPTAHFK+S+V LRK+
Sbjct: 175 VYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKE 234

Query: 259 IKNHG-NPTSHEPELVLTNFTTRLGLRVGRYIFES--KENKKEADSKSKSKDTKGEKV-- 318
           IK  G +PT H PE++L NFTTRLG  +GR +F S    N +    +  +   + + +  
Sbjct: 235 IKRRGKDPTEHIPEIILNNFTTRLGHSIGR-MFASLFPHNPQFIGRQVATFHNQRDYIFF 294

Query: 319 --------SQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHK 354
                   S++KV   +QE GPRFT+KL SLQ GTFDSK GEYEWVHK
Sbjct: 295 RFHRYIFRSEKKV--GIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHK 336

[Close]

BLAST of Spg002262 vs. ExPASy Swiss-Prot
Match: Q9H9Y2 (Ribosome production factor 1 OS=Homo sapiens OX=9606 GN=RPF1 PE=1 SV=2)

HSP 1 Score: 198.4 bits (503), Expect = 1.6e-49
Identity = 126/288 (43.75%), Postives = 173/288 (60.07%), Query Frame = 0


Query: 79  SMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREV 138
           S IKNK++R  +    K Q+R EK     A+   +K+   LG++ PP+ VP+TI+N R  
Sbjct: 55  SEIKNKQRRHLMFTRWKQQQRKEK---LAAKKKLKKEREALGDKAPPKPVPKTIDNQRVY 114

Query: 139 DETVCKPDDEELFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVIPNAH 198
           DET   P+DEE+      DEF+S   ++  PK+LITT             +L +VIPN+H
Sbjct: 115 DETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSH 174

Query: 199 YYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKD 258
            Y R    LKKII    A+DFT L+V++  R+  +GL++  LP GPTAHFK+S+V LRK+
Sbjct: 175 VYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKE 234

Query: 259 IKNHG-NPTSHEPELVLTNFTTRLGLRVGRYIFES--KENKKEADSKSKSKDTKGEKV-- 318
           IK  G +PT H PE++L NFTTRLG  +GR +F S    N +    +  +   + + +  
Sbjct: 235 IKRRGKDPTEHIPEIILNNFTTRLGHSIGR-MFASLFPHNPQFIGRQVATFHNQRDYIFF 294

Query: 319 --------SQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHK 354
                   S++KV   +QE GPRFT+KL SLQ GTFDSK GEYEWVHK
Sbjct: 295 RFHRYIFRSEKKV--GIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHK 336

[Close]

BLAST of Spg002262 vs. ExPASy Swiss-Prot
Match: Q5RJS9 (Ribosome production factor 1 OS=Rattus norvegicus OX=10116 GN=Rpf1 PE=2 SV=2)

HSP 1 Score: 198.4 bits (503), Expect = 1.6e-49
Identity = 129/289 (44.64%), Postives = 176/289 (60.90%), Query Frame = 0


Query: 79  SMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREV 138
           S IKNK++R  +    K Q+R EK   AK +   E++A  LG++ PP+ VP+TI+N R  
Sbjct: 55  SEIKNKQRRHLMFTRWKQQQRKEK-LAAKKKLKREREA--LGDKAPPKPVPKTIDNQRVY 114

Query: 139 DETVCKPDDEELFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVIPNAH 198
           DET   P+DEE+      DEF+S   R+  PK+LITT             +L +VIP++H
Sbjct: 115 DETTVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSH 174

Query: 199 YYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKD 258
            Y R    LKKII    A+DFT L+V++  R+  +GL++  LP GPTAHFK+S+V LRK+
Sbjct: 175 VYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKE 234

Query: 259 IKNHG-NPTSHEPELVLTNFTTRLGLRVGRYIFES--KENKKEADSKSKSKDTKGEKV-- 318
           IK  G +PT H PE++L NFTTRLG  +GR +F S    N +    +  +   + + +  
Sbjct: 235 IKRRGKDPTEHVPEIILNNFTTRLGHSIGR-MFASLFPHNPQFIGRQVATFHNQRDYIFF 294

Query: 319 --------SQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKV 355
                   S++KV   +QE GPRFT+KL SLQ GTFDSK GEYEWVHKV
Sbjct: 295 RFHRYIFKSEKKV--GIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKV 337

[Close]

BLAST of Spg002262 vs. ExPASy Swiss-Prot
Match: Q7TND5 (Ribosome production factor 1 OS=Mus musculus OX=10090 GN=Rpf1 PE=2 SV=2)

HSP 1 Score: 198.0 bits (502), Expect = 2.2e-49
Identity = 126/288 (43.75%), Postives = 173/288 (60.07%), Query Frame = 0


Query: 79  SMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREV 138
           S IKNK++R  +    K Q+R EK     A+   +K+   LG++ PP+ VP+TI+N R  
Sbjct: 55  SEIKNKQRRHLMFTRWKQQQRKEK---LAAKKKLKKEREALGDKAPPKPVPKTIDNQRVY 114

Query: 139 DETVCKPDDEELFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVIPNAH 198
           DET   P+DEE+      DEF+S   R+  PK+LITT             +L +VIP++H
Sbjct: 115 DETTVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSH 174

Query: 199 YYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKD 258
            Y R    LKKII    A+DFT L+V++  R+  +GL++  LP GPTAHFK+S+V LRK+
Sbjct: 175 VYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKE 234

Query: 259 IKNHG-NPTSHEPELVLTNFTTRLGLRVGRYIFES--KENKKEADSKSKSKDTKGEKV-- 318
           IK  G +PT H PE++L NFTTRLG  +GR +F S    N +    +  +   + + +  
Sbjct: 235 IKRRGKDPTEHVPEIILNNFTTRLGHSIGR-MFASLFPHNPQFIGRQVATFHNQRDYIFF 294

Query: 319 --------SQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHK 354
                   S++KV   +QE GPRFT+KL SLQ GTFDSK GEYEWVHK
Sbjct: 295 RFHRYIFKSEKKV--GIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHK 336

[Close]

BLAST of Spg002262 vs. ExPASy TrEMBL
Match: A0A6J1DPH5 (ribosome production factor 1-like OS=Momordica charantia OX=3673 GN=LOC111023106 PE=4 SV=1)

HSP 1 Score: 524.2 bits (1349), Expect = 4.8e-145
Identity = 273/325 (84.00%), Postives = 281/325 (86.46%), Query Frame = 0


Query: 66  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPP 125
           MGEEKK  RDIIPSMIKNKEKR EVHANLK QK+LEKRKRAKARDA+EKQALELGEEPPP
Sbjct: 1   MGEEKKNKRDIIPSMIKNKEKRKEVHANLKQQKKLEKRKRAKARDASEKQALELGEEPPP 60

Query: 126 RMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPA 185
           RM+PRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR  LPKVLITTCRFNSTIGP+
Sbjct: 61  RMIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRHTLPKVLITTCRFNSTIGPS 120

Query: 186 FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT 245
           FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT
Sbjct: 121 FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT 180

Query: 246 AHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG------------------- 305
           AHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG                   
Sbjct: 181 AHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVV 240

Query: 306 --------------RYIFESKENKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMK 358
                         RYIF+SKENKKEADSKS SKD KGEKV +QKVIARLQECGPRFTMK
Sbjct: 241 TFHNQRDFIFFRHHRYIFDSKENKKEADSKSNSKDAKGEKVPKQKVIARLQECGPRFTMK 300

[Close]

BLAST of Spg002262 vs. ExPASy TrEMBL
Match: A0A6J1DT48 (ribosome production factor 1-like OS=Momordica charantia OX=3673 GN=LOC111022909 PE=4 SV=1)

HSP 1 Score: 524.2 bits (1349), Expect = 4.8e-145
Identity = 273/325 (84.00%), Postives = 281/325 (86.46%), Query Frame = 0


Query: 66  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPP 125
           MGEEKK  RDIIPSMIKNKEKR EVHANLK QK+LEKRKRAKARDA+EKQALELGEEPPP
Sbjct: 1   MGEEKKNKRDIIPSMIKNKEKRKEVHANLKQQKKLEKRKRAKARDASEKQALELGEEPPP 60

Query: 126 RMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPA 185
           RM+PRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR  LPKVLITTCRFNS+IGP+
Sbjct: 61  RMIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRHTLPKVLITTCRFNSSIGPS 120

Query: 186 FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT 245
           FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT
Sbjct: 121 FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT 180

Query: 246 AHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG------------------- 305
           AHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG                   
Sbjct: 181 AHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVV 240

Query: 306 --------------RYIFESKENKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMK 358
                         RYIF+SKENKKEADSKS SKD KGEKV QQKVIARLQECGPRFTMK
Sbjct: 241 TFHNQRDFVFFRHHRYIFDSKENKKEADSKSNSKDAKGEKVPQQKVIARLQECGPRFTMK 300

[Close]

BLAST of Spg002262 vs. ExPASy TrEMBL
Match: A0A1S3B854 (ribosome production factor 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486828 PE=4 SV=1)

HSP 1 Score: 517.3 bits (1331), Expect = 5.9e-143
Identity = 273/325 (84.00%), Postives = 282/325 (86.77%), Query Frame = 0


Query: 66  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPP 125
           MGEE KK++ IIPSMIKNKEKRAEVHANLK+QK+LEKRKRAKARDAAEKQALELGEE PP
Sbjct: 1   MGEE-KKNKGIIPSMIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPP 60

Query: 126 RMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPA 185
           R +PRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR+ LPKVLITTCRFNSTIGPA
Sbjct: 61  RKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPA 120

Query: 186 FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT 245
           FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT
Sbjct: 121 FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT 180

Query: 246 AHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG------------------- 305
           AHFKISNVVLRKDIKNHGNPT H+PELVLTNFTTRLGLRVG                   
Sbjct: 181 AHFKISNVVLRKDIKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVV 240

Query: 306 --------------RYIFESKENKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMK 358
                         RYIFESKENKKEADSK KSKDTKGEKV QQKVIARLQECGPRFTMK
Sbjct: 241 TFHNQRDFIFFRHHRYIFESKENKKEADSKKKSKDTKGEKVPQQKVIARLQECGPRFTMK 300

[Close]

BLAST of Spg002262 vs. ExPASy TrEMBL
Match: A0A5A7UHC7 (Ribosome production factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006030 PE=4 SV=1)

HSP 1 Score: 517.3 bits (1331), Expect = 5.9e-143
Identity = 273/325 (84.00%), Postives = 282/325 (86.77%), Query Frame = 0


Query: 66  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPP 125
           MGEE KK++ IIPSMIKNKEKRAEVHANLK+QK+LEKRKRAKARDAAEKQALELGEE PP
Sbjct: 1   MGEE-KKNKGIIPSMIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPP 60

Query: 126 RMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPA 185
           R +PRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR+ LPKVLITTCRFNSTIGPA
Sbjct: 61  RKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPA 120

Query: 186 FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT 245
           FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT
Sbjct: 121 FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT 180

Query: 246 AHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG------------------- 305
           AHFKISNVVLRKDIKNHGNPT H+PELVLTNFTTRLGLRVG                   
Sbjct: 181 AHFKISNVVLRKDIKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVV 240

Query: 306 --------------RYIFESKENKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMK 358
                         RYIFESKENKKEADSK KSKDTKGEKV QQKVIARLQECGPRFTMK
Sbjct: 241 TFHNQRDFIFFRHHRYIFESKENKKEADSKKKSKDTKGEKVPQQKVIARLQECGPRFTMK 300

[Close]

BLAST of Spg002262 vs. ExPASy TrEMBL
Match: A0A0A0LH42 (Brix domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G814330 PE=4 SV=1)

HSP 1 Score: 508.8 bits (1309), Expect = 2.1e-140
Identity = 267/325 (82.15%), Postives = 280/325 (86.15%), Query Frame = 0


Query: 66  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPP 125
           MGEE KK++ I+PS IKNKEKRAEVHANLK+QK+LEKRKRAKARDAAEKQALELGEE PP
Sbjct: 1   MGEE-KKNKVIVPSTIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPP 60

Query: 126 RMVPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPA 185
           R +PRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR+ LPK+LITTCRFNSTIGPA
Sbjct: 61  RKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKILITTCRFNSTIGPA 120

Query: 186 FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT 245
           FISELLSVIPNAHYYKRGTNDLKKI+EYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT
Sbjct: 121 FISELLSVIPNAHYYKRGTNDLKKIVEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT 180

Query: 246 AHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG------------------- 305
           AHFKISNVVLRK+IKNHGNPT H+PELVLTNFTTRLGLRVG                   
Sbjct: 181 AHFKISNVVLRKEIKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVV 240

Query: 306 --------------RYIFESKENKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMK 358
                         RYIFESKENKKEADSK KSK TKGEKV QQKVIARLQECGPRFTMK
Sbjct: 241 TFHNQRDFIFFRHHRYIFESKENKKEADSKKKSKGTKGEKVPQQKVIARLQECGPRFTMK 300

[Close]

BLAST of Spg002262 vs. TAIR 10
Match: AT4G01560.1 (Ribosomal RNA processing Brix domain protein )

HSP 1 Score: 387.5 bits (994), Expect = 1.4e-107
Identity = 196/307 (63.84%), Postives = 245/307 (79.80%), Query Frame = 0


Query: 71  KKSRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPPPRMVPR 130
           +K   I+PSMIKNK+KR++V+A  K++K+LEK+K+ +ARDAAEK+ALELGEEPP +M+P+
Sbjct: 29  EKRNVILPSMIKNKDKRSKVYAKQKHEKKLEKQKKIRARDAAEKRALELGEEPPQKMIPK 88

Query: 131 TIENTREVDETVCKPDDEELFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISEL 190
           TIENTRE DETVC+PDDEELFA  DADEF+ +++RE  PKVL+TTCRFNST GPA ISEL
Sbjct: 89  TIENTRESDETVCRPDDEELFADIDADEFNPVLRREIAPKVLLTTCRFNSTRGPALISEL 148

Query: 191 LSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKI 250
           LSVIPN+HY KRGT DLKKI+EYA  KDFTSL+VVHT+RR+ D LLIIGLP GPTAHFK+
Sbjct: 149 LSVIPNSHYQKRGTYDLKKIVEYATKKDFTSLIVVHTNRREPDALLIIGLPNGPTAHFKL 208

Query: 251 SNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVGRY---IFESKENKKEADSKS---- 310
           SN+VLRKDIKNHGNPTSH+PELVL NFTTRLG RVGR+   +F    N +     +    
Sbjct: 209 SNLVLRKDIKNHGNPTSHQPELVLNNFTTRLGNRVGRFFQSLFPPDPNFRGRRVVTFHNQ 268

Query: 311 -------------KSKDTKGEKVSQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEW 358
                        ++K++K +K  ++ +  RLQECGPRFT+KL++LQHGTFD+KGGE+EW
Sbjct: 269 RDFIFFRHHRYIFETKESKSDKGKEETIKPRLQECGPRFTLKLVTLQHGTFDTKGGEFEW 328

[Close]

BLAST of Spg002262 vs. TAIR 10
Match: AT1G63780.1 (Ribosomal RNA processing Brix domain protein )

HSP 1 Score: 117.1 bits (292), Expect = 3.4e-26
Identity = 83/225 (36.89%), Postives = 118/225 (52.44%), Query Frame = 0


Query: 157 DEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANA 216
           DE+++    EA PK+L+TT R  S     F  EL  V PN+    RG+  + +IIE A +
Sbjct: 73  DEYAN--ATEADPKILLTTSRNPSAPLIRFTKELKFVFPNSQRINRGSQVISEIIETARS 132

Query: 217 KDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDI---KNHGNPTSHEPELV 276
            DFT +++VH  R   DGL+I  LP GPTA+F + NVV R DI   K+ G      P L+
Sbjct: 133 HDFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHDISDKKSIGKMPEQYPHLI 192

Query: 277 LTNFTTRLGLRVG---RYIFES-KENKKEADSKSKSKD---------TKGEKVSQQKVIA 336
             NFTT++G RVG   ++IF + K + K   + S   D          KGE   +     
Sbjct: 193 FNNFTTQMGQRVGNILKHIFPAPKLDAKRIVTFSNQSDYISFRNHVYDKGEGGPKS---I 252

Query: 337 RLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKVSLNLPYPLKWI 366
            L+E GPRF ++L  ++ GT +    E EWV +  +N     K+I
Sbjct: 253 ELKEIGPRFELRLYQVKLGTVEQNEAEIEWVIRPYMNTSKKRKFI 292

The following BLAST results are available for this feature:

BLAST of Spg002262 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155906.1	1.0e-144	84.00	ribosome production factor 1-like [Momordica charantia]	[more]
XP_022156150.1	1.0e-144	84.00	ribosome production factor 1-like [Momordica charantia] >XP_022156151.1 ribosome...	[more]
XP_038906205.1	7.2e-143	84.00	ribosome production factor 1 [Benincasa hispida]	[more]
XP_008443155.1	1.2e-142	84.00	PREDICTED: ribosome production factor 1 isoform X1 [Cucumis melo] >XP_008443156....	[more]
XP_031737500.1	4.3e-140	82.15	ribosome production factor 1 [Cucumis sativus] >KGN59366.1 hypothetical protein ...	[more]

BLAST of Spg002262 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8AVP1	1.9e-50	43.99	Ribosome production factor 1 OS=Xenopus laevis OX=8355 GN=rpf1 PE=2 SV=1	[more]
Q5R631	7.4e-50	44.10	Ribosome production factor 1 OS=Pongo abelii OX=9601 GN=RPF1 PE=2 SV=1	[more]
Q9H9Y2	1.6e-49	43.75	Ribosome production factor 1 OS=Homo sapiens OX=9606 GN=RPF1 PE=1 SV=2	[more]
Q5RJS9	1.6e-49	44.64	Ribosome production factor 1 OS=Rattus norvegicus OX=10116 GN=Rpf1 PE=2 SV=2	[more]
Q7TND5	2.2e-49	43.75	Ribosome production factor 1 OS=Mus musculus OX=10090 GN=Rpf1 PE=2 SV=2	[more]

BLAST of Spg002262 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DPH5	4.8e-145	84.00	ribosome production factor 1-like OS=Momordica charantia OX=3673 GN=LOC111023106...	[more]
A0A6J1DT48	4.8e-145	84.00	ribosome production factor 1-like OS=Momordica charantia OX=3673 GN=LOC111022909...	[more]
A0A1S3B854	5.9e-143	84.00	ribosome production factor 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486828 ...	[more]
A0A5A7UHC7	5.9e-143	84.00	Ribosome production factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0LH42	2.1e-140	82.15	Brix domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G814330 PE=4 S...	[more]

BLAST of Spg002262 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G01560.1	1.4e-107	63.84	Ribosomal RNA processing Brix domain protein	[more]
AT1G63780.1	3.4e-26	36.89	Ribosomal RNA processing Brix domain protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 91..111
None	No IPR available	GENE3D	3.40.50.10480		coord: 169..332 e-value: 2.1E-36 score: 127.2
None	No IPR available	PANTHER	PTHR22734:SF3	RIBOSOME PRODUCTION FACTOR 1	coord: 69..289 coord: 287..355
None	No IPR available	SUPERFAMILY	52954	Class II aaRS ABD-related	coord: 169..339
IPR007109	Brix domain	SMART	SM00879	Brix_2	coord: 172..336 e-value: 7.1E-28 score: 108.6
IPR007109	Brix domain	PFAM	PF04427	Brix	coord: 186..278 e-value: 2.4E-14 score: 53.9
IPR007109	Brix domain	PROSITE	PS50833	BRIX	coord: 169..342 score: 27.924299
IPR044281	U3 snoRNP protein/Ribosome production factor 1	PANTHER	PTHR22734	U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4	coord: 69..289 coord: 287..355

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg002262.1	Spg002262.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000460	maturation of 5.8S rRNA
biological_process	GO:0000470	maturation of LSU-rRNA
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0030687	preribosome, large subunit precursor
molecular_function	GO:0042134	rRNA primary transcript binding
molecular_function	GO:0019843	rRNA binding