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Spg002244 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCGATGTGGAAGTTTGATTTAAGAAAGGAAAAGAGCCGTTACAGTGTACGCGACGGCGAAGCCATAAGGCGAATAAAAGAGCCGTTGGCGGTCACCGGTCACCGGCGCGGCAAACGGTCGGATTCTGAGAAATTTTCCAAATTTGAAATGGATTTGTTTCCGTTGGCTATAAATGAGACCCCGCTCCCGCCTCCCCCCGCGCATCATTCAAACTCTCTTCATCCATTATTCTCTGCTTTGCTTTGCTAATTTGCTTTGGTTTTGATCAGACAGCCACCATGTCTTTCTTCTCCACCACTTCCTGCCTCCAATACTGTATCCGCGGCACTCGAAACACCACCGGCGATCAAGTTCTGAAACTCCGATTCGGGCATTGTAGCCGCCTGATTTCTGGATTCCCACACCAAATCCTTCAACAAACTCCGTCCACTCTGATCGGGGAGGCTCTGTTTCCTCTCTGTTTGAGCGACCTCGAAGAAGCGCCGTTCCTGGCCCATTTTTGTGTGGTTGAGTTCCTGAGTTCGTTCAACGTCCACACCTCCGTGGCCGACATCCTGTTCCAGAAGATCGCCTCCTTCGCCGAAAGATTGGGCGGCGGCGTCAGCATAGAGGCGAGGATCGACTACGTGAAGATGTTTTGGATGGAGGGACAGAGCATCGGGGAGGAGGGGATTGTGGTGGTGGAAGAAACTCGGAGAGGGGCACCGGAGTCGGCGATTGAGAGACTGACGAATCAGGAATATGAGTTTGAAGATGAAGATGAGATGGAGGATTGCAGTGTTTGCTACGATGAAATGAAGAAGGGGAATGGGAAGGAGATGGCGAAGATGCCTTGTGGACACGTGTATCACAAATCATGCATTTTGACATGGCTTCGAACCAACAACTCCTGCCCTCTCTGCAGAGCCAAATTACAATAA ATGTCGATGTGGAAGTTTGATTTAAGAAAGGAAAAGAGCCGTTACAGTGTACGCGACGGCGAAGCCATAAGGCGAATAAAAGAGCCGTTGGCGACAGCCACCATGTCTTTCTTCTCCACCACTTCCTGCCTCCAATACTGTATCCGCGGCACTCGAAACACCACCGGCGATCAAGTTCTGAAACTCCGATTCGGGCATTGTAGCCGCCTGATTTCTGGATTCCCACACCAAATCCTTCAACAAACTCCGTCCACTCTGATCGGGGAGGCTCTGTTTCCTCTCTGTTTGAGCGACCTCGAAGAAGCGCCGTTCCTGGCCCATTTTTGTGTGGTTGAGTTCCTGAGTTCGTTCAACGTCCACACCTCCGTGGCCGACATCCTGTTCCAGAAGATCGCCTCCTTCGCCGAAAGATTGGGCGGCGGCGTCAGCATAGAGGCGAGGATCGACTACGTGAAGATGTTTTGGATGGAGGGACAGAGCATCGGGGAGGAGGGGATTGTGGTGGTGGAAGAAACTCGGAGAGGGGCACCGGAGTCGGCGATTGAGAGACTGACGAATCAGGAATATGAGTTTGAAGATGAAGATGAGATGGAGGATTGCAGTGTTTGCTACGATGAAATGAAGAAGGGGAATGGGAAGGAGATGGCGAAGATGCCTTGTGGACACGTGTATCACAAATCATGCATTTTGACATGGCTTCGAACCAACAACTCCTGCCCTCTCTGCAGAGCCAAATTACAATAA ATGTCGATGTGGAAGTTTGATTTAAGAAAGGAAAAGAGCCGTTACAGTGTACGCGACGGCGAAGCCATAAGGCGAATAAAAGAGCCGTTGGCGACAGCCACCATGTCTTTCTTCTCCACCACTTCCTGCCTCCAATACTGTATCCGCGGCACTCGAAACACCACCGGCGATCAAGTTCTGAAACTCCGATTCGGGCATTGTAGCCGCCTGATTTCTGGATTCCCACACCAAATCCTTCAACAAACTCCGTCCACTCTGATCGGGGAGGCTCTGTTTCCTCTCTGTTTGAGCGACCTCGAAGAAGCGCCGTTCCTGGCCCATTTTTGTGTGGTTGAGTTCCTGAGTTCGTTCAACGTCCACACCTCCGTGGCCGACATCCTGTTCCAGAAGATCGCCTCCTTCGCCGAAAGATTGGGCGGCGGCGTCAGCATAGAGGCGAGGATCGACTACGTGAAGATGTTTTGGATGGAGGGACAGAGCATCGGGGAGGAGGGGATTGTGGTGGTGGAAGAAACTCGGAGAGGGGCACCGGAGTCGGCGATTGAGAGACTGACGAATCAGGAATATGAGTTTGAAGATGAAGATGAGATGGAGGATTGCAGTGTTTGCTACGATGAAATGAAGAAGGGGAATGGGAAGGAGATGGCGAAGATGCCTTGTGGACACGTGTATCACAAATCATGCATTTTGACATGGCTTCGAACCAACAACTCCTGCCCTCTCTGCAGAGCCAAATTACAATAA MSMWKFDLRKEKSRYSVRDGEAIRRIKEPLATATMSFFSTTSCLQYCIRGTRNTTGDQVLKLRFGHCSRLISGFPHQILQQTPSTLIGEALFPLCLSDLEEAPFLAHFCVVEFLSSFNVHTSVADILFQKIASFAERLGGGVSIEARIDYVKMFWMEGQSIGEEGIVVVEETRRGAPESAIERLTNQEYEFEDEDEMEDCSVCYDEMKKGNGKEMAKMPCGHVYHKSCILTWLRTNNSCPLCRAKLQ Homology
BLAST of Spg002244 vs. NCBI nr
Match: XP_038876917.1 (E3 ubiquitin-protein ligase DZIP3-like [Benincasa hispida] >XP_038876930.1 E3 ubiquitin-protein ligase DZIP3-like [Benincasa hispida]) HSP 1 Score: 191.8 bits (486), Expect = 7.0e-45 Identity = 115/234 (49.15%), Postives = 150/234 (64.10%), Query Frame = 0
BLAST of Spg002244 vs. NCBI nr
Match: XP_008457277.1 (PREDICTED: RING finger protein 165-like [Cucumis melo] >KAA0033274.1 RING finger protein 165-like [Cucumis melo var. makuwa] >TYK14831.1 RING finger protein 165-like protein [Cucumis melo var. makuwa]) HSP 1 Score: 178.7 bits (452), Expect = 6.1e-41 Identity = 110/233 (47.21%), Postives = 143/233 (61.37%), Query Frame = 0
BLAST of Spg002244 vs. NCBI nr
Match: XP_023539480.1 (E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 174.9 bits (442), Expect = 8.8e-40 Identity = 95/210 (45.24%), Postives = 138/210 (65.71%), Query Frame = 0
BLAST of Spg002244 vs. NCBI nr
Match: KAG6605221.1 (E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 169.5 bits (428), Expect = 3.7e-38 Identity = 90/196 (45.92%), Postives = 129/196 (65.82%), Query Frame = 0
BLAST of Spg002244 vs. NCBI nr
Match: XP_023006824.1 (RING-H2 finger protein ATL16-like [Cucurbita maxima]) HSP 1 Score: 169.5 bits (428), Expect = 3.7e-38 Identity = 99/228 (43.42%), Postives = 138/228 (60.53%), Query Frame = 0
BLAST of Spg002244 vs. ExPASy Swiss-Prot
Match: Q9SPL2 (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 1.5e-10 Identity = 38/79 (48.10%), Postives = 48/79 (60.76%), Query Frame = 0
BLAST of Spg002244 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 4.9e-09 Identity = 30/72 (41.67%), Postives = 47/72 (65.28%), Query Frame = 0
BLAST of Spg002244 vs. ExPASy Swiss-Prot
Match: O22197 (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 6.4e-09 Identity = 35/79 (44.30%), Postives = 47/79 (59.49%), Query Frame = 0
BLAST of Spg002244 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 8.3e-09 Identity = 31/72 (43.06%), Postives = 43/72 (59.72%), Query Frame = 0
BLAST of Spg002244 vs. ExPASy Swiss-Prot
Match: Q9Y7K6 (Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC2A9.04c PE=4 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 8.3e-09 Identity = 24/60 (40.00%), Postives = 40/60 (66.67%), Query Frame = 0
BLAST of Spg002244 vs. ExPASy TrEMBL
Match: A0A5D3CSM6 (RING finger protein 165-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold472G00260 PE=4 SV=1) HSP 1 Score: 178.7 bits (452), Expect = 2.9e-41 Identity = 110/233 (47.21%), Postives = 143/233 (61.37%), Query Frame = 0
BLAST of Spg002244 vs. ExPASy TrEMBL
Match: A0A1S3C5T8 (RING finger protein 165-like OS=Cucumis melo OX=3656 GN=LOC103497006 PE=4 SV=1) HSP 1 Score: 178.7 bits (452), Expect = 2.9e-41 Identity = 110/233 (47.21%), Postives = 143/233 (61.37%), Query Frame = 0
BLAST of Spg002244 vs. ExPASy TrEMBL
Match: A0A6J1L387 (RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111499493 PE=4 SV=1) HSP 1 Score: 169.5 bits (428), Expect = 1.8e-38 Identity = 99/228 (43.42%), Postives = 138/228 (60.53%), Query Frame = 0
BLAST of Spg002244 vs. ExPASy TrEMBL
Match: A0A6J1KYV1 (E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita maxima OX=3661 GN=LOC111499496 PE=4 SV=1) HSP 1 Score: 168.7 bits (426), Expect = 3.1e-38 Identity = 91/196 (46.43%), Postives = 128/196 (65.31%), Query Frame = 0
BLAST of Spg002244 vs. ExPASy TrEMBL
Match: A0A0A0LHS2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G130680 PE=4 SV=1) HSP 1 Score: 167.9 bits (424), Expect = 5.2e-38 Identity = 104/229 (45.41%), Postives = 134/229 (58.52%), Query Frame = 0
BLAST of Spg002244 vs. TAIR 10
Match: AT5G64920.1 (COP1-interacting protein 8 ) HSP 1 Score: 68.2 bits (165), Expect = 1.1e-11 Identity = 38/79 (48.10%), Postives = 48/79 (60.76%), Query Frame = 0
BLAST of Spg002244 vs. TAIR 10
Match: AT1G60360.1 (RING/U-box superfamily protein ) HSP 1 Score: 64.3 bits (155), Expect = 1.6e-10 Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 0
BLAST of Spg002244 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein ) HSP 1 Score: 63.2 bits (152), Expect = 3.5e-10 Identity = 30/72 (41.67%), Postives = 47/72 (65.28%), Query Frame = 0
BLAST of Spg002244 vs. TAIR 10
Match: AT2G40830.2 (RING-H2 finger C1A ) HSP 1 Score: 62.8 bits (151), Expect = 4.5e-10 Identity = 35/79 (44.30%), Postives = 47/79 (59.49%), Query Frame = 0
BLAST of Spg002244 vs. TAIR 10
Match: AT2G40830.1 (RING-H2 finger C1A ) HSP 1 Score: 62.8 bits (151), Expect = 4.5e-10 Identity = 35/79 (44.30%), Postives = 47/79 (59.49%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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