Spg002244 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg002244
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionE3 ubiquitin-protein ligase RNF126-like
Locationscaffold1: 31702004 .. 31702926 (-)
RNA-Seq ExpressionSpg002244
SyntenySpg002244
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGATGTGGAAGTTTGATTTAAGAAAGGAAAAGAGCCGTTACAGTGTACGCGACGGCGAAGCCATAAGGCGAATAAAAGAGCCGTTGGCGGTCACCGGTCACCGGCGCGGCAAACGGTCGGATTCTGAGAAATTTTCCAAATTTGAAATGGATTTGTTTCCGTTGGCTATAAATGAGACCCCGCTCCCGCCTCCCCCCGCGCATCATTCAAACTCTCTTCATCCATTATTCTCTGCTTTGCTTTGCTAATTTGCTTTGGTTTTGATCAGACAGCCACCATGTCTTTCTTCTCCACCACTTCCTGCCTCCAATACTGTATCCGCGGCACTCGAAACACCACCGGCGATCAAGTTCTGAAACTCCGATTCGGGCATTGTAGCCGCCTGATTTCTGGATTCCCACACCAAATCCTTCAACAAACTCCGTCCACTCTGATCGGGGAGGCTCTGTTTCCTCTCTGTTTGAGCGACCTCGAAGAAGCGCCGTTCCTGGCCCATTTTTGTGTGGTTGAGTTCCTGAGTTCGTTCAACGTCCACACCTCCGTGGCCGACATCCTGTTCCAGAAGATCGCCTCCTTCGCCGAAAGATTGGGCGGCGGCGTCAGCATAGAGGCGAGGATCGACTACGTGAAGATGTTTTGGATGGAGGGACAGAGCATCGGGGAGGAGGGGATTGTGGTGGTGGAAGAAACTCGGAGAGGGGCACCGGAGTCGGCGATTGAGAGACTGACGAATCAGGAATATGAGTTTGAAGATGAAGATGAGATGGAGGATTGCAGTGTTTGCTACGATGAAATGAAGAAGGGGAATGGGAAGGAGATGGCGAAGATGCCTTGTGGACACGTGTATCACAAATCATGCATTTTGACATGGCTTCGAACCAACAACTCCTGCCCTCTCTGCAGAGCCAAATTACAATAA

mRNA sequence

ATGTCGATGTGGAAGTTTGATTTAAGAAAGGAAAAGAGCCGTTACAGTGTACGCGACGGCGAAGCCATAAGGCGAATAAAAGAGCCGTTGGCGACAGCCACCATGTCTTTCTTCTCCACCACTTCCTGCCTCCAATACTGTATCCGCGGCACTCGAAACACCACCGGCGATCAAGTTCTGAAACTCCGATTCGGGCATTGTAGCCGCCTGATTTCTGGATTCCCACACCAAATCCTTCAACAAACTCCGTCCACTCTGATCGGGGAGGCTCTGTTTCCTCTCTGTTTGAGCGACCTCGAAGAAGCGCCGTTCCTGGCCCATTTTTGTGTGGTTGAGTTCCTGAGTTCGTTCAACGTCCACACCTCCGTGGCCGACATCCTGTTCCAGAAGATCGCCTCCTTCGCCGAAAGATTGGGCGGCGGCGTCAGCATAGAGGCGAGGATCGACTACGTGAAGATGTTTTGGATGGAGGGACAGAGCATCGGGGAGGAGGGGATTGTGGTGGTGGAAGAAACTCGGAGAGGGGCACCGGAGTCGGCGATTGAGAGACTGACGAATCAGGAATATGAGTTTGAAGATGAAGATGAGATGGAGGATTGCAGTGTTTGCTACGATGAAATGAAGAAGGGGAATGGGAAGGAGATGGCGAAGATGCCTTGTGGACACGTGTATCACAAATCATGCATTTTGACATGGCTTCGAACCAACAACTCCTGCCCTCTCTGCAGAGCCAAATTACAATAA

Coding sequence (CDS)

ATGTCGATGTGGAAGTTTGATTTAAGAAAGGAAAAGAGCCGTTACAGTGTACGCGACGGCGAAGCCATAAGGCGAATAAAAGAGCCGTTGGCGACAGCCACCATGTCTTTCTTCTCCACCACTTCCTGCCTCCAATACTGTATCCGCGGCACTCGAAACACCACCGGCGATCAAGTTCTGAAACTCCGATTCGGGCATTGTAGCCGCCTGATTTCTGGATTCCCACACCAAATCCTTCAACAAACTCCGTCCACTCTGATCGGGGAGGCTCTGTTTCCTCTCTGTTTGAGCGACCTCGAAGAAGCGCCGTTCCTGGCCCATTTTTGTGTGGTTGAGTTCCTGAGTTCGTTCAACGTCCACACCTCCGTGGCCGACATCCTGTTCCAGAAGATCGCCTCCTTCGCCGAAAGATTGGGCGGCGGCGTCAGCATAGAGGCGAGGATCGACTACGTGAAGATGTTTTGGATGGAGGGACAGAGCATCGGGGAGGAGGGGATTGTGGTGGTGGAAGAAACTCGGAGAGGGGCACCGGAGTCGGCGATTGAGAGACTGACGAATCAGGAATATGAGTTTGAAGATGAAGATGAGATGGAGGATTGCAGTGTTTGCTACGATGAAATGAAGAAGGGGAATGGGAAGGAGATGGCGAAGATGCCTTGTGGACACGTGTATCACAAATCATGCATTTTGACATGGCTTCGAACCAACAACTCCTGCCCTCTCTGCAGAGCCAAATTACAATAA

Protein sequence

MSMWKFDLRKEKSRYSVRDGEAIRRIKEPLATATMSFFSTTSCLQYCIRGTRNTTGDQVLKLRFGHCSRLISGFPHQILQQTPSTLIGEALFPLCLSDLEEAPFLAHFCVVEFLSSFNVHTSVADILFQKIASFAERLGGGVSIEARIDYVKMFWMEGQSIGEEGIVVVEETRRGAPESAIERLTNQEYEFEDEDEMEDCSVCYDEMKKGNGKEMAKMPCGHVYHKSCILTWLRTNNSCPLCRAKLQ
Homology
BLAST of Spg002244 vs. NCBI nr
Match: XP_038876917.1 (E3 ubiquitin-protein ligase DZIP3-like [Benincasa hispida] >XP_038876930.1 E3 ubiquitin-protein ligase DZIP3-like [Benincasa hispida])

HSP 1 Score: 191.8 bits (486), Expect = 7.0e-45
Identity = 115/234 (49.15%), Postives = 150/234 (64.10%), Query Frame = 0

Query: 38  FSTTSCLQYCIRGTRNTTGDQVLKLRFGHCSRLISG------FPHQILQQTPSTLIGEAL 97
           FSTTS + Y   GT N+  DQVL++RFG CSRLIS        P +ILQQT ST IGEAL
Sbjct: 3   FSTTSSIAYYFHGTPNS--DQVLQVRFGVCSRLISRSPSPGIIPDRILQQTRSTPIGEAL 62

Query: 98  FPLC-LSDLEEAPFLAHFCVVEFLSSFNVHTSVADILFQKIASFAERL---GGGVSIEAR 157
           FP   + D+ E      F V  FL SFN+H+SV  ++ +KI SFA++     G   IEA 
Sbjct: 63  FPFTNVRDVGEEA-AVEFLVNGFLRSFNLHSSVCQMMSRKILSFAQQFDANNGSFKIEAN 122

Query: 158 IDYVKMFWMEGQS-------IGEEGIVVVEE------TRRGAPESAIERLTNQEYE-FED 217
           IDY+K FWME  S       IGEEG  +  E       R GAPESAIER+  Q+++ F++
Sbjct: 123 IDYMKEFWMEAVSWLHPNSIIGEEGFEINFEEGPPPARRAGAPESAIERVRKQKFDGFKE 182

Query: 218 EDEMEDCSVCYDEMKKGNGKEMAKMPCGHVYHKSCILTWLRTNNSCPLCRAKLQ 248
           E+E  +C VC +++K+  G E++++PCGHVYHKSCILTWL  +N+CPLCR  L+
Sbjct: 183 EEETGECCVCCEDLKR-KGMEVSRIPCGHVYHKSCILTWLERSNTCPLCRRSLE 232

BLAST of Spg002244 vs. NCBI nr
Match: XP_008457277.1 (PREDICTED: RING finger protein 165-like [Cucumis melo] >KAA0033274.1 RING finger protein 165-like [Cucumis melo var. makuwa] >TYK14831.1 RING finger protein 165-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 178.7 bits (452), Expect = 6.1e-41
Identity = 110/233 (47.21%), Postives = 143/233 (61.37%), Query Frame = 0

Query: 38  FSTTSCLQYCIRGTRNTTGDQVLKLRFGHCSRLISG------FPHQILQQTPSTLIGEAL 97
           FS TSCL+    G  NT  DQ L +RFG CSRLIS        P  IL+QTP TLIGEAL
Sbjct: 3   FSATSCLECSFSGYPNT--DQTLIVRFGSCSRLISQSPSPEIIPDVILEQTPFTLIGEAL 62

Query: 98  FPL----CLSDLEEAPFLAHFCVVEFLSSFNVHTSVADILFQKIASFAERL---GGGVSI 157
           F L    C    +E  +L    V EFL SFN+ +SV  I+   I SFA++       V I
Sbjct: 63  FSLSNLRCPLQQQELQYL----VNEFLHSFNLRSSVCRIISHNILSFAQQFDINNEWVKI 122

Query: 158 EARIDYVKMFWMEG-------QSIGEEGIVVVEETRRGAPESAIERLTNQEYEF---EDE 217
           EA +D++K +W E         ++GEEG+     + RGA ESAIER+  Q+ ++   E+E
Sbjct: 123 EANVDHIKEYWTEAPPELNPISTVGEEGL-----SPRGASESAIERVKKQKLDWFSEEEE 182

Query: 218 DEMEDCSVCYDEMKKGNGKEMAKMPCGHVYHKSCILTWLRTNNSCPLCRAKLQ 248
           +E+ DC VC +EMK+  G+E+ ++PCGHVYHKSCIL WL  +NSCPLCRA L+
Sbjct: 183 EEIGDCCVCCEEMKR-KGEEVRRIPCGHVYHKSCILKWLEISNSCPLCRAALE 223

BLAST of Spg002244 vs. NCBI nr
Match: XP_023539480.1 (E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174.9 bits (442), Expect = 8.8e-40
Identity = 95/210 (45.24%), Postives = 138/210 (65.71%), Query Frame = 0

Query: 57  DQVLKLRFGHCSRLI-----SGFPHQILQQTPSTLIGEALFPLCLSDLEEAPFLAHFCVV 116
           DQ+L++R GH SRL+     SG+P  I+ +T  T + +A FPL L +LE+ P      + 
Sbjct: 20  DQLLQIRIGHSSRLLTGSPFSGYPFNIVHETLPTTMADAQFPLPLRELED-PLFCQAYIK 79

Query: 117 EFLSSFNVHTSVADILFQKIASFAERLGGG-----VSIEARIDYVKMFWM-EGQSIGEEG 176
           EFLSS+N+  ++ + + ++IASF  ++  G       I A IDY++MFWM +  +  EE 
Sbjct: 80  EFLSSYNLGATIKNAIARRIASFVVQMACGNYEMTFYIVAEIDYIQMFWMDDSATAAEEE 139

Query: 177 IVVVEET--------RRGAPESAIERLTNQEYEFEDEDEMEDCSVCYDEMKKGNGKEMAK 236
               EET        RRGAPE+AIERL  ++++    +++ +CSVCYDEMK G G+E+++
Sbjct: 140 EDEEEETEIFDDFSGRRGAPETAIERLKKEKFDGFGGEDLGNCSVCYDEMKDG-GEEVSR 199

Query: 237 MPCGHVYHKSCILTWLRTNNSCPLCRAKLQ 248
           +PCGHVYHKSC+LTWL+ NNSCPLCR KL+
Sbjct: 200 IPCGHVYHKSCVLTWLQRNNSCPLCRNKLE 227

BLAST of Spg002244 vs. NCBI nr
Match: KAG6605221.1 (E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 169.5 bits (428), Expect = 3.7e-38
Identity = 90/196 (45.92%), Postives = 129/196 (65.82%), Query Frame = 0

Query: 58  QVLKLRFGHCSRLISGFPHQILQQTPSTLIGEALFPLCLSDLEEAPFLAHFCVVEFLSSF 117
           Q+L+LR G+ + LIS    QILQQTP+T +G+ALFP  L DL+  PFL++  V++FLSSF
Sbjct: 31  QLLELRLGNSTHLISRSSRQILQQTPTTPMGDALFPFVLRDLQHPPFLSNCYVLQFLSSF 90

Query: 118 NVHTSVADILFQKIASFAERLGGG-----VSIEARIDYVKMFWMEGQSIGEEGIVVVEET 177
           ++  +  DI++++I+SFA +L  G       I   +D ++M W++      E     E  
Sbjct: 91  SIPIAACDIIYEEISSFALQLAAGNVDLNFHIVVEVDVIEMIWVDLDPFLVEEYSPAE-- 150

Query: 178 RRGAPESAIERLTNQEYE-FEDEDEMEDCSVCYDEMKKGNGKEMAKMPCGHVYHKSCILT 237
             GAP SAIERL  QE++   DE+E  DCSVC + +K    +E++++PCGHVYHK CIL 
Sbjct: 151 MNGAPASAIERLQRQEFDGLRDEEEEGDCSVCCEALK--GEEEVSRIPCGHVYHKCCILK 210

Query: 238 WLRTNNSCPLCRAKLQ 248
           WL+ +NSCPLCR KL+
Sbjct: 211 WLQMSNSCPLCRTKLE 222

BLAST of Spg002244 vs. NCBI nr
Match: XP_023006824.1 (RING-H2 finger protein ATL16-like [Cucurbita maxima])

HSP 1 Score: 169.5 bits (428), Expect = 3.7e-38
Identity = 99/228 (43.42%), Postives = 138/228 (60.53%), Query Frame = 0

Query: 38  FSTTSCLQYCIRGTRNTTGD--------QVLKLRFGHCSRLISGFPHQILQQTPSTLIGE 97
           F  +   Q+ IR   NTTG         Q ++LR GH S LIS    QILQQ+PST +GE
Sbjct: 5   FGDSLSFQFSIR--TNTTGTLASHEHPMQFVELRLGHSSHLISRSSRQILQQSPSTPLGE 64

Query: 98  ALFPLCLSDLEEAPFLAHFCVVEFLSSFNVHTSVADILFQKIASFAERLGG-----GVSI 157
           +LFP  L DLE  PFL ++ V+ FLSSF++  +  DI++Q+I+SFA RL          I
Sbjct: 65  SLFPFILRDLEHPPFLPNYHVLHFLSSFSIPVAACDIIYQEISSFALRLTADNVDLNFHI 124

Query: 158 EARIDYVKMFWMEGQSIGEEGIVVVEE----TRRGAPESAIERLTNQEYE-FEDEDEMED 217
              +D ++M W++          +VEE       GAP SAIERL  Q+++   +E+E  D
Sbjct: 125 VVDVDAIEMIWVDLDPF------LVEEYSPPAMNGAPASAIERLQRQKFDGLREEEEEGD 184

Query: 218 CSVCYDEMKKGNGKEMAKMPCGHVYHKSCILTWLRTNNSCPLCRAKLQ 248
           CSVC + ++    +E++++PCGHVYHK CIL WL+ +NSCPLCR KL+
Sbjct: 185 CSVCCEALR--GEEEVSRIPCGHVYHKCCILKWLQISNSCPLCRTKLE 222

BLAST of Spg002244 vs. ExPASy Swiss-Prot
Match: Q9SPL2 (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.5e-10
Identity = 38/79 (48.10%), Postives = 48/79 (60.76%), Query Frame = 0

Query: 173 RRGAP---ESAIERLTNQEYEFEDEDEMEDCSVCYDEMKKG-NGKEMAKMPCGHVYHKSC 232
           RRGAP   +SAIE L   E    + + +  C+VC D M  G  GK   K+PCGH YH  C
Sbjct: 227 RRGAPPAAKSAIEALETFEVSSSEGEMVMVCAVCKDGMVMGETGK---KLPCGHCYHGDC 286

Query: 233 ILTWLRTNNSCPLCRAKLQ 248
           I+ WL T NSCP+CR +L+
Sbjct: 287 IVPWLGTRNSCPVCRFQLE 302

BLAST of Spg002244 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.9e-09
Identity = 30/72 (41.67%), Postives = 47/72 (65.28%), Query Frame = 0

Query: 176 APESAIERLTNQEYEFED-EDEMEDCSVCYDEMKKGNGKEMAKMPCGHVYHKSCILTWLR 235
           A +SAI+ L   +   +  + EM  C+VC DE +  +G ++ +MPC HV+H+ C+L WL 
Sbjct: 191 ASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFE--DGSDVKQMPCKHVFHQDCLLPWLE 250

Query: 236 TNNSCPLCRAKL 247
            +NSCP+CR +L
Sbjct: 251 LHNSCPVCRFEL 260

BLAST of Spg002244 vs. ExPASy Swiss-Prot
Match: O22197 (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.4e-09
Identity = 35/79 (44.30%), Postives = 47/79 (59.49%), Query Frame = 0

Query: 172 TRRG---APESAIERL-TNQEYEFEDEDEMEDCSVCYDEMKKGNGKEMAKMPCGHVYHKS 231
           TRRG   AP SAI+ L T +  +        +C VC DE + G+  E  +MPC H+YH  
Sbjct: 158 TRRGPPPAPRSAIDALPTIKIAQRHLRSSDSNCPVCKDEFELGS--EAKQMPCNHIYHSD 217

Query: 232 CILTWLRTNNSCPLCRAKL 247
           CI+ WL  +NSCP+CR +L
Sbjct: 218 CIVPWLVQHNSCPVCRQEL 234

BLAST of Spg002244 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 8.3e-09
Identity = 31/72 (43.06%), Postives = 43/72 (59.72%), Query Frame = 0

Query: 176 APESAIERLTNQEYEFED-EDEMEDCSVCYDEMKKGNGKEMAKMPCGHVYHKSCILTWLR 235
           A +SAIE L        +   E   C+VC D+ ++G   E  +MPC H+YHK C+L WL 
Sbjct: 199 ASKSAIEALPLVNITKSNLNSEFNQCAVCMDDFEEGT--EAKQMPCKHLYHKDCLLPWLE 258

Query: 236 TNNSCPLCRAKL 247
            +NSCP+CR +L
Sbjct: 259 LHNSCPVCRHEL 268

BLAST of Spg002244 vs. ExPASy Swiss-Prot
Match: Q9Y7K6 (Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC2A9.04c PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 8.3e-09
Identity = 24/60 (40.00%), Postives = 40/60 (66.67%), Query Frame = 0

Query: 189 YEFEDEDEMED--CSVCYDEMKKGNGKEMAKMPCGHVYHKSCILTWLRTNNSCPLCRAKL 247
           +E    D++ D  C +CYD+M + + K+  KMPCGH++ K+C+  WL  + +CPLCR ++
Sbjct: 94  FEPLSNDQLMDLTCPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLCRKEV 153

BLAST of Spg002244 vs. ExPASy TrEMBL
Match: A0A5D3CSM6 (RING finger protein 165-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold472G00260 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 2.9e-41
Identity = 110/233 (47.21%), Postives = 143/233 (61.37%), Query Frame = 0

Query: 38  FSTTSCLQYCIRGTRNTTGDQVLKLRFGHCSRLISG------FPHQILQQTPSTLIGEAL 97
           FS TSCL+    G  NT  DQ L +RFG CSRLIS        P  IL+QTP TLIGEAL
Sbjct: 3   FSATSCLECSFSGYPNT--DQTLIVRFGSCSRLISQSPSPEIIPDVILEQTPFTLIGEAL 62

Query: 98  FPL----CLSDLEEAPFLAHFCVVEFLSSFNVHTSVADILFQKIASFAERL---GGGVSI 157
           F L    C    +E  +L    V EFL SFN+ +SV  I+   I SFA++       V I
Sbjct: 63  FSLSNLRCPLQQQELQYL----VNEFLHSFNLRSSVCRIISHNILSFAQQFDINNEWVKI 122

Query: 158 EARIDYVKMFWMEG-------QSIGEEGIVVVEETRRGAPESAIERLTNQEYEF---EDE 217
           EA +D++K +W E         ++GEEG+     + RGA ESAIER+  Q+ ++   E+E
Sbjct: 123 EANVDHIKEYWTEAPPELNPISTVGEEGL-----SPRGASESAIERVKKQKLDWFSEEEE 182

Query: 218 DEMEDCSVCYDEMKKGNGKEMAKMPCGHVYHKSCILTWLRTNNSCPLCRAKLQ 248
           +E+ DC VC +EMK+  G+E+ ++PCGHVYHKSCIL WL  +NSCPLCRA L+
Sbjct: 183 EEIGDCCVCCEEMKR-KGEEVRRIPCGHVYHKSCILKWLEISNSCPLCRAALE 223

BLAST of Spg002244 vs. ExPASy TrEMBL
Match: A0A1S3C5T8 (RING finger protein 165-like OS=Cucumis melo OX=3656 GN=LOC103497006 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 2.9e-41
Identity = 110/233 (47.21%), Postives = 143/233 (61.37%), Query Frame = 0

Query: 38  FSTTSCLQYCIRGTRNTTGDQVLKLRFGHCSRLISG------FPHQILQQTPSTLIGEAL 97
           FS TSCL+    G  NT  DQ L +RFG CSRLIS        P  IL+QTP TLIGEAL
Sbjct: 3   FSATSCLECSFSGYPNT--DQTLIVRFGSCSRLISQSPSPEIIPDVILEQTPFTLIGEAL 62

Query: 98  FPL----CLSDLEEAPFLAHFCVVEFLSSFNVHTSVADILFQKIASFAERL---GGGVSI 157
           F L    C    +E  +L    V EFL SFN+ +SV  I+   I SFA++       V I
Sbjct: 63  FSLSNLRCPLQQQELQYL----VNEFLHSFNLRSSVCRIISHNILSFAQQFDINNEWVKI 122

Query: 158 EARIDYVKMFWMEG-------QSIGEEGIVVVEETRRGAPESAIERLTNQEYEF---EDE 217
           EA +D++K +W E         ++GEEG+     + RGA ESAIER+  Q+ ++   E+E
Sbjct: 123 EANVDHIKEYWTEAPPELNPISTVGEEGL-----SPRGASESAIERVKKQKLDWFSEEEE 182

Query: 218 DEMEDCSVCYDEMKKGNGKEMAKMPCGHVYHKSCILTWLRTNNSCPLCRAKLQ 248
           +E+ DC VC +EMK+  G+E+ ++PCGHVYHKSCIL WL  +NSCPLCRA L+
Sbjct: 183 EEIGDCCVCCEEMKR-KGEEVRRIPCGHVYHKSCILKWLEISNSCPLCRAALE 223

BLAST of Spg002244 vs. ExPASy TrEMBL
Match: A0A6J1L387 (RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111499493 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.8e-38
Identity = 99/228 (43.42%), Postives = 138/228 (60.53%), Query Frame = 0

Query: 38  FSTTSCLQYCIRGTRNTTGD--------QVLKLRFGHCSRLISGFPHQILQQTPSTLIGE 97
           F  +   Q+ IR   NTTG         Q ++LR GH S LIS    QILQQ+PST +GE
Sbjct: 5   FGDSLSFQFSIR--TNTTGTLASHEHPMQFVELRLGHSSHLISRSSRQILQQSPSTPLGE 64

Query: 98  ALFPLCLSDLEEAPFLAHFCVVEFLSSFNVHTSVADILFQKIASFAERLGG-----GVSI 157
           +LFP  L DLE  PFL ++ V+ FLSSF++  +  DI++Q+I+SFA RL          I
Sbjct: 65  SLFPFILRDLEHPPFLPNYHVLHFLSSFSIPVAACDIIYQEISSFALRLTADNVDLNFHI 124

Query: 158 EARIDYVKMFWMEGQSIGEEGIVVVEE----TRRGAPESAIERLTNQEYE-FEDEDEMED 217
              +D ++M W++          +VEE       GAP SAIERL  Q+++   +E+E  D
Sbjct: 125 VVDVDAIEMIWVDLDPF------LVEEYSPPAMNGAPASAIERLQRQKFDGLREEEEEGD 184

Query: 218 CSVCYDEMKKGNGKEMAKMPCGHVYHKSCILTWLRTNNSCPLCRAKLQ 248
           CSVC + ++    +E++++PCGHVYHK CIL WL+ +NSCPLCR KL+
Sbjct: 185 CSVCCEALR--GEEEVSRIPCGHVYHKCCILKWLQISNSCPLCRTKLE 222

BLAST of Spg002244 vs. ExPASy TrEMBL
Match: A0A6J1KYV1 (E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita maxima OX=3661 GN=LOC111499496 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 3.1e-38
Identity = 91/196 (46.43%), Postives = 128/196 (65.31%), Query Frame = 0

Query: 58  QVLKLRFGHCSRLISGFPHQILQQTPSTLIGEALFPLCLSDLEEAPFLAHFCVVEFLSSF 117
           Q+L+LR GH + LIS    QILQQTPST IG+ALFP  L DL+  PFL++  V++FLSSF
Sbjct: 31  QLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVLRDLQHPPFLSNCYVLQFLSSF 90

Query: 118 NVHTSVADILFQKIASFAERLGGG-----VSIEARIDYVKMFWMEGQSIGEEGIVVVEET 177
           ++  +  DI++++I+SFA +L  G       I   +D  +M W++      E     E  
Sbjct: 91  SIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEVDVNEMIWVDLDPFLVEEYSPAE-- 150

Query: 178 RRGAPESAIERLTNQEYE-FEDEDEMEDCSVCYDEMKKGNGKEMAKMPCGHVYHKSCILT 237
             GAP SAIERL  Q+++   +E+E  DCSVC + +K    +E++++PCGHVYHK CIL 
Sbjct: 151 MNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALK--GEEEVSRIPCGHVYHKFCILK 210

Query: 238 WLRTNNSCPLCRAKLQ 248
           WL+ +NSCPLCR KL+
Sbjct: 211 WLQMSNSCPLCRTKLE 222

BLAST of Spg002244 vs. ExPASy TrEMBL
Match: A0A0A0LHS2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G130680 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 5.2e-38
Identity = 104/229 (45.41%), Postives = 134/229 (58.52%), Query Frame = 0

Query: 38  FSTTSCLQYCIRGTRNTTGDQVLKLRFGHCSRLISG------FPHQILQQTPSTLIGEAL 97
           FS TSC+Q    G  NT  DQ L +R   CSRLIS        P  IL+QTP TLIGEAL
Sbjct: 3   FSATSCVQCSFSGYPNT--DQTLIVRLRFCSRLISQSLAPEIVPDVILEQTPFTLIGEAL 62

Query: 98  FPLCLSDLEEAPFLAHFCVVEFLSSFNVHTSVADILFQKIASFAERL---GGGVSIEARI 157
           F L             + V EFL SFN+ +SV  I+   I SFA++         IE  +
Sbjct: 63  FSLSNLQYPLQQQELEYMVNEFLRSFNLRSSVCRIVSHNILSFAQQFDINNECFKIETNV 122

Query: 158 DYVKMFWMEG-------QSIGEEGIVVVEETRRGAPESAIERLTNQEYE---FEDEDEME 217
           DY+K +W E         ++GEEG+       RGA ESAIER+  Q+++    E+E+E+ 
Sbjct: 123 DYIKEYWTEAAPELYPISTVGEEGL-----PPRGASESAIERVKKQKFDGFRGEEEEEIG 182

Query: 218 DCSVCYDEMKKGNGKEMAKMPCGHVYHKSCILTWLRTNNSCPLCRAKLQ 248
           DCSVC +E+K+  G E+ ++PCGHVYHKSCIL WL  +NSCPLCRA L+
Sbjct: 183 DCSVCCEEIKR-KGGEVRRIPCGHVYHKSCILKWLEISNSCPLCRAALE 223

BLAST of Spg002244 vs. TAIR 10
Match: AT5G64920.1 (COP1-interacting protein 8 )

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-11
Identity = 38/79 (48.10%), Postives = 48/79 (60.76%), Query Frame = 0

Query: 173 RRGAP---ESAIERLTNQEYEFEDEDEMEDCSVCYDEMKKG-NGKEMAKMPCGHVYHKSC 232
           RRGAP   +SAIE L   E    + + +  C+VC D M  G  GK   K+PCGH YH  C
Sbjct: 227 RRGAPPAAKSAIEALETFEVSSSEGEMVMVCAVCKDGMVMGETGK---KLPCGHCYHGDC 286

Query: 233 ILTWLRTNNSCPLCRAKLQ 248
           I+ WL T NSCP+CR +L+
Sbjct: 287 IVPWLGTRNSCPVCRFQLE 302

BLAST of Spg002244 vs. TAIR 10
Match: AT1G60360.1 (RING/U-box superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-10
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 0

Query: 195 DEMEDCSVCYDEMKKGNGKEMAKMPCGHVYHKSCILTWLRTNNSCPLCRAKL 247
           ++M  C+VC +E   G   +  ++PC H+YHK CI+ WLR NNSCP+CR  L
Sbjct: 219 NDMSQCTVCMEEFIVGG--DATELPCKHIYHKDCIVPWLRLNNSCPICRRDL 268

BLAST of Spg002244 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 3.5e-10
Identity = 30/72 (41.67%), Postives = 47/72 (65.28%), Query Frame = 0

Query: 176 APESAIERLTNQEYEFED-EDEMEDCSVCYDEMKKGNGKEMAKMPCGHVYHKSCILTWLR 235
           A +SAI+ L   +   +  + EM  C+VC DE +  +G ++ +MPC HV+H+ C+L WL 
Sbjct: 191 ASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFE--DGSDVKQMPCKHVFHQDCLLPWLE 250

Query: 236 TNNSCPLCRAKL 247
            +NSCP+CR +L
Sbjct: 251 LHNSCPVCRFEL 260

BLAST of Spg002244 vs. TAIR 10
Match: AT2G40830.2 (RING-H2 finger C1A )

HSP 1 Score: 62.8 bits (151), Expect = 4.5e-10
Identity = 35/79 (44.30%), Postives = 47/79 (59.49%), Query Frame = 0

Query: 172 TRRG---APESAIERL-TNQEYEFEDEDEMEDCSVCYDEMKKGNGKEMAKMPCGHVYHKS 231
           TRRG   AP SAI+ L T +  +        +C VC DE + G+  E  +MPC H+YH  
Sbjct: 158 TRRGPPPAPRSAIDALPTIKIAQRHLRSSDSNCPVCKDEFELGS--EAKQMPCNHIYHSD 217

Query: 232 CILTWLRTNNSCPLCRAKL 247
           CI+ WL  +NSCP+CR +L
Sbjct: 218 CIVPWLVQHNSCPVCRQEL 234

BLAST of Spg002244 vs. TAIR 10
Match: AT2G40830.1 (RING-H2 finger C1A )

HSP 1 Score: 62.8 bits (151), Expect = 4.5e-10
Identity = 35/79 (44.30%), Postives = 47/79 (59.49%), Query Frame = 0

Query: 172 TRRG---APESAIERL-TNQEYEFEDEDEMEDCSVCYDEMKKGNGKEMAKMPCGHVYHKS 231
           TRRG   AP SAI+ L T +  +        +C VC DE + G+  E  +MPC H+YH  
Sbjct: 158 TRRGPPPAPRSAIDALPTIKIAQRHLRSSDSNCPVCKDEFELGS--EAKQMPCNHIYHSD 217

Query: 232 CILTWLRTNNSCPLCRAKL 247
           CI+ WL  +NSCP+CR +L
Sbjct: 218 CIVPWLVQHNSCPVCRQEL 234

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038876917.17.0e-4549.15E3 ubiquitin-protein ligase DZIP3-like [Benincasa hispida] >XP_038876930.1 E3 ub... [more]
XP_008457277.16.1e-4147.21PREDICTED: RING finger protein 165-like [Cucumis melo] >KAA0033274.1 RING finger... [more]
XP_023539480.18.8e-4045.24E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo][more]
KAG6605221.13.7e-3845.92E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_023006824.13.7e-3843.42RING-H2 finger protein ATL16-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Q9SPL21.5e-1048.10E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV... [more]
Q8LPN74.9e-0941.67E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19... [more]
O221976.4e-0944.30Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RH... [more]
P0CH308.3e-0943.06E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV... [more]
Q9Y7K68.3e-0940.00Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces pombe (strai... [more]
Match NameE-valueIdentityDescription
A0A5D3CSM62.9e-4147.21RING finger protein 165-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A1S3C5T82.9e-4147.21RING finger protein 165-like OS=Cucumis melo OX=3656 GN=LOC103497006 PE=4 SV=1[more]
A0A6J1L3871.8e-3843.42RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111499493 PE... [more]
A0A6J1KYV13.1e-3846.43E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita maxima OX=3661 GN=LOC111499... [more]
A0A0A0LHS25.2e-3845.41RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G130680 P... [more]
Match NameE-valueIdentityDescription
AT5G64920.11.1e-1148.10COP1-interacting protein 8 [more]
AT1G60360.11.6e-1048.08RING/U-box superfamily protein [more]
AT3G19950.13.5e-1041.67RING/U-box superfamily protein [more]
AT2G40830.24.5e-1044.30RING-H2 finger C1A [more]
AT2G40830.14.5e-1044.30RING-H2 finger C1A [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 200..242
e-value: 3.2E-8
score: 43.3
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 199..243
e-value: 2.2E-14
score: 53.5
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 200..243
score: 13.477729
IPR011016Zinc finger, RING-CH-typeSMARTSM00744ringv_2coord: 199..243
e-value: 0.0062
score: 8.9
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 166..247
e-value: 3.1E-21
score: 76.8
NoneNo IPR availablePANTHERPTHR45931SI:CH211-59O9.10coord: 112..247
NoneNo IPR availablePANTHERPTHR45931:SF9E3 UBIQUITIN-PROTEIN LIGASE RNF12-B-LIKEcoord: 112..247
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 181..246

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg002244.1Spg002244.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding